scAnno: a deconvolution strategy-based automatic cell type annotation tool for single-cell RNA-sequencing data sets.

Liu, Hongjia; Li, Huamei; Sharma, Amit; Huang, Wenjuan; Pan, Duo; Gu, Yu; Lin, Lu; Sun, Xiao; Liu, Hongde

Liu, Hongjia; Li, Huamei; Sharma, Amit; Huang, Wenjuan; Pan, Duo; Gu, Yu; Lin, Lu; Sun, Xiao; Liu, Hongde.

Afiliación

Liu H; State Key Laboratory of Digital Medical Engineering, School of Biological Science & Medical Engineering, Southeast University, Nanjing, 210096, China.
Li H; Department of General Surgery, Nanjing Drum Tower Hospital, the Affiliated Hospital of Nanjing University Medical School, Nanjing, 210008, PR China.
Sharma A; Department of Neurosurgery, University Hospital Bonn, Bonn, Germany.
Huang W; Southeast University Hospital, Nanjing, China.
Pan D; State Key Laboratory of Digital Medical Engineering, School of Biological Science & Medical Engineering, Southeast University, Nanjing, 210096, China.
Gu Y; State Key Laboratory of Digital Medical Engineering, School of Biological Science & Medical Engineering, Southeast University, Nanjing, 210096, China.
Lin L; State Key Laboratory of Digital Medical Engineering, School of Biological Science & Medical Engineering, Southeast University, Nanjing, 210096, China.
Sun X; State Key Laboratory of Digital Medical Engineering, School of Biological Science & Medical Engineering, Southeast University, Nanjing, 210096, China.
Liu H; State Key Laboratory of Digital Medical Engineering, School of Biological Science & Medical Engineering, Southeast University, Nanjing, 210096, China.

Brief Bioinform ; 24(3)2023 05 19.

Article en En | MEDLINE | ID: mdl-37183449

Asunto(s)

Algoritmos; Programas Informáticos; Animales; Ratones; Humanos; Perfilación de la Expresión Génica/métodos; Leucocitos Mononucleares; Análisis de la Célula Individual/métodos; ARN/genética; Análisis de Secuencia de ARN/métodos

Palabras clave

cell type-specific genes; deconvolution; logistic regression; scRNA-seq data annotation

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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Algoritmos / Programas Informáticos Límite: Animals / Humans Idioma: En Revista: Brief Bioinform Asunto de la revista: BIOLOGIA / INFORMATICA MEDICA Año: 2023 Tipo del documento: Article País de afiliación: China Pais de publicación: Reino Unido

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