StrainIQ: A Novel <i>n</i>-Gram-Based Method for Taxonomic Profiling of Human Microbiota at the Strain Level.

Pandey, Sanjit; Avuthu, Nagavardhini; Guda, Chittibabu

StrainIQ: A Novel n-Gram-Based Method for Taxonomic Profiling of Human Microbiota at the Strain Level.

Pandey, Sanjit; Avuthu, Nagavardhini; Guda, Chittibabu.

Afiliación

Pandey S; Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Omaha, NE 68198, USA.
Avuthu N; Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Omaha, NE 68198, USA.
Guda C; Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Omaha, NE 68198, USA.

Genes (Basel) ; 14(8)2023 08 18.

Article en En | MEDLINE | ID: mdl-37628698

Asunto(s)

Microbiota; Humanos; Microbiota/genética; Metagenoma/genética; Algoritmos; Biología Computacional; Secuenciación de Nucleótidos de Alto Rendimiento

Palabras clave

DSEM; StrainIQ; metagenomics; microbiota; n-grams; site-specific; strain-level

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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Microbiota Tipo de estudio: Prognostic_studies Límite: Humans Idioma: En Revista: Genes (Basel) Año: 2023 Tipo del documento: Article País de afiliación: Estados Unidos Pais de publicación: Suiza

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