Your browser doesn't support javascript.
loading
Genome resources for three modern cotton lines guide future breeding efforts.
Sreedasyam, Avinash; Lovell, John T; Mamidi, Sujan; Khanal, Sameer; Jenkins, Jerry W; Plott, Christopher; Bryan, Kempton B; Li, Zhigang; Shu, Shengqiang; Carlson, Joseph; Goodstein, David; De Santiago, Luis; Kirkbride, Ryan C; Calleja, Sebastian; Campbell, Todd; Koebernick, Jenny C; Dever, Jane K; Scheffler, Jodi A; Pauli, Duke; Jenkins, Johnie N; McCarty, Jack C; Williams, Melissa; Boston, LoriBeth; Webber, Jenell; Udall, Joshua A; Chen, Z Jeffrey; Bourland, Fred; Stiller, Warwick N; Saski, Christopher A; Grimwood, Jane; Chee, Peng W; Jones, Don C; Schmutz, Jeremy.
Afiliación
  • Sreedasyam A; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA. asreedasyam@hudsonalpha.org.
  • Lovell JT; DOE Joint Genome Institute, Berkeley, CA, USA. asreedasyam@hudsonalpha.org.
  • Mamidi S; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.
  • Khanal S; DOE Joint Genome Institute, Berkeley, CA, USA.
  • Jenkins JW; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.
  • Plott C; Department of Crop and Soil Sciences and Institute of Plant Breeding, Genetics, and Genomics, University of Georgia, Tifton, GA, USA.
  • Bryan KB; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.
  • Li Z; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.
  • Shu S; Department of Plant and Environmental Sciences, Clemson University, Clemson, SC, USA.
  • Carlson J; Department of Plant and Environmental Sciences, Clemson University, Clemson, SC, USA.
  • Goodstein D; DOE Joint Genome Institute, Berkeley, CA, USA.
  • De Santiago L; DOE Joint Genome Institute, Berkeley, CA, USA.
  • Kirkbride RC; DOE Joint Genome Institute, Berkeley, CA, USA.
  • Calleja S; Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, USA.
  • Campbell T; Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, USA.
  • Koebernick JC; School of Plant Sciences, University of Arizona, Tucson, AZ, USA.
  • Dever JK; USDA-ARS, Coastal Plains Soil Water and Plant Research Center, Florence, SC, USA.
  • Scheffler JA; Department of Crop, Soil and Environmental Sciences, Auburn University, Auburn, AL, USA.
  • Pauli D; Texas A&M AgriLife Research, Lubbock, TX, USA.
  • Jenkins JN; Pee Dee Research and Education Center, Clemson University, Florence, SC, USA.
  • McCarty JC; USDA-ARS, Crop Genetics Research Unit, Stoneville, MS, USA.
  • Williams M; School of Plant Sciences, University of Arizona, Tucson, AZ, USA.
  • Boston L; USDA-ARS, Genetics and Sustainable Agriculture Research Unit, Mississippi State, MS, USA.
  • Webber J; USDA-ARS, Genetics and Sustainable Agriculture Research Unit, Mississippi State, MS, USA.
  • Udall JA; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.
  • Chen ZJ; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.
  • Bourland F; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.
  • Stiller WN; USDA-ARS, Crop Germplasm Research Unit, College Station, TX, USA.
  • Saski CA; Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, USA.
  • Grimwood J; Northeast Research and Extension Center (NEREC), University of Arkansas, Keiser, AR, USA.
  • Chee PW; CSIRO Agriculture and Food Cotton Research Unit, Narrabri, New South Wales, Australia.
  • Jones DC; Department of Plant and Environmental Sciences, Clemson University, Clemson, SC, USA.
  • Schmutz J; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.
Nat Plants ; 10(6): 1039-1051, 2024 06.
Article en En | MEDLINE | ID: mdl-38816498
ABSTRACT
Cotton (Gossypium hirsutum L.) is the key renewable fibre crop worldwide, yet its yield and fibre quality show high variability due to genotype-specific traits and complex interactions among cultivars, management practices and environmental factors. Modern breeding practices may limit future yield gains due to a narrow founding gene pool. Precision breeding and biotechnological approaches offer potential solutions, contingent on accurate cultivar-specific data. Here we address this need by generating high-quality reference genomes for three modern cotton cultivars ('UGA230', 'UA48' and 'CSX8308') and updating the 'TM-1' cotton genetic standard reference. Despite hypothesized genetic uniformity, considerable sequence and structural variation was observed among the four genomes, which overlap with ancient and ongoing genomic introgressions from 'Pima' cotton, gene regulatory mechanisms and phenotypic trait divergence. Differentially expressed genes across fibre development correlate with fibre production, potentially contributing to the distinctive fibre quality traits observed in modern cotton cultivars. These genomes and comparative analyses provide a valuable foundation for future genetic endeavours to enhance global cotton yield and sustainability.
Asunto(s)
Texto completo
Añadir a Mi BVS
Imprimir
XML
PubMed Links
Buscar en Google

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Genoma de Planta / Gossypium / Fitomejoramiento Idioma: En Revista: Nat Plants Año: 2024 Tipo del documento: Article País de afiliación: Estados Unidos Pais de publicación: Reino Unido
Texto completo
Añadir a Mi BVS
Imprimir
XML
PubMed Links
Buscar en Google

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Genoma de Planta / Gossypium / Fitomejoramiento Idioma: En Revista: Nat Plants Año: 2024 Tipo del documento: Article País de afiliación: Estados Unidos Pais de publicación: Reino Unido