Figeno: multi-region genomic figures with long-read support.
Bioinformatics
; 40(6)2024 06 03.
Article
en En
| MEDLINE
| ID: mdl-38857451
ABSTRACT
SUMMARY:
The vast amount of publicly available genomic data requires analysis and visualization tools. Here, we present figeno, an application for generating publication-quality FIgures for GENOmics. Figeno particularly focuses on multi-region views across genomic breakpoints and on long reads with base modifications. In addition, we support epigenomic data including ATAC-seq, ChIP-seq or HiC, as well as whole genome sequencing data with copy numbers and structural variants. AVAILABILITY AND IMPLEMENTATION Figeno is available as a python package with both a command line and graphical user interface. It can be installed via PyPI and the source code is available at https//github.com/CompEpigen/figeno.
Texto completo:
1
Colección:
01-internacional
Base de datos:
MEDLINE
Asunto principal:
Programas Informáticos
/
Genómica
Límite:
Humans
Idioma:
En
Revista:
Bioinformatics
Asunto de la revista:
INFORMATICA MEDICA
Año:
2024
Tipo del documento:
Article
País de afiliación:
Alemania
Pais de publicación:
Reino Unido