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PhyloJS: Bridging phylogenetics and web development with a JavaScript utility library.
Featherstone, Leo A; Wirth, Wytamma.
Afiliación
  • Featherstone LA; Peter Doherty Institute for Infection and Immunity University of Melbourne Melbourne Victoria Australia.
  • Wirth W; Peter Doherty Institute for Infection and Immunity University of Melbourne Melbourne Victoria Australia.
Ecol Evol ; 14(6): e11603, 2024 Jun.
Article en En | MEDLINE | ID: mdl-38932954
ABSTRACT
There is an increasing number of libraries devoted to parsing, manipulating and visualising phylogenetic trees in JavaScript. Many of these libraries bundle tree manipulation with visualisation, but have limited ability to manipulate trees and lack detailed documentation. As the number of web-based phylogenetic tools and the size of phylogenetics datasets increases, there is a need for a library that parses, writes and manipulates phylogenetic trees that is interoperable with other phylogenetic and data visualisation libraries. Here we introduce PhyloJS, a light zero-dependency TypeScript and JavaScript library for reading, writing and manipulating phylogenetic trees. PhyloJS allows for modification of and data-extraction from trees to integrate with other phylogenetics and data visualisation libraries. It can swiftly handle large trees, up to at least 10 6 tips in size, making it ideal for developing the next generation of more complex web-based phylogenetics applications handling ever larger datasets. The PhyloJS source code is available on GitHub (https//github.com/clockor2/phylojs) and can be installed via npm with the command npm install phylojs. Extensive documentation is available at https//clockor2.github.io/phylojs/.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Idioma: En Revista: Ecol Evol Año: 2024 Tipo del documento: Article Pais de publicación: Reino Unido

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Idioma: En Revista: Ecol Evol Año: 2024 Tipo del documento: Article Pais de publicación: Reino Unido