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The chromosome-level genome assembly of Aphidoletes aphidimyza Rondani (Diptera: Cecidomyiidae).
Shen, Xiuxian; Jin, Jianfeng; Zhang, Guoqiang; Yan, Bin; Yu, Xiaofei; Wu, Huizi; Yang, Maofa; Zhang, Feng.
Affiliation
  • Shen X; Institute of Entomology, Guizhou Provincial Key Laboratory for Agricultural Pest Management of the Mountainous Region, College of Agriculture, Guizhou University, Guiyang, 550025, China.
  • Jin J; Department of Entomology, College of Plant Protection, Nanjing Agricultural University, Nanjing, 210095, China.
  • Zhang G; Department of Entomology, College of Plant Protection, Nanjing Agricultural University, Nanjing, 210095, China.
  • Yan B; Department of Entomology, College of Plant Protection, Nanjing Agricultural University, Nanjing, 210095, China.
  • Yu X; Institute of Entomology, Guizhou Provincial Key Laboratory for Agricultural Pest Management of the Mountainous Region, College of Agriculture, Guizhou University, Guiyang, 550025, China.
  • Wu H; College of Tobacco Science, Guizhou University, Guiyang, 550025, China.
  • Yang M; Zunyi Branch of Guizhou Tobacco Company, Zunyi, 564200, China.
  • Zhang F; Institute of Entomology, Guizhou Provincial Key Laboratory for Agricultural Pest Management of the Mountainous Region, College of Agriculture, Guizhou University, Guiyang, 550025, China. mfyang@gzu.edu.cn.
Sci Data ; 11(1): 785, 2024 Jul 17.
Article in En | MEDLINE | ID: mdl-39019956
ABSTRACT
Aphidoletes aphidimyza is widely recognized as an effective predator of aphids in agricultural systems. However, there is limited understanding of its predation mechanisms. In this study, we generated a high-quality chromosome level of the A. aphidimyza genome by combining PacBio, Illumina, and Hi-C data. The genome has a size of 192.08 Mb, with a scaffold N50 size of 46.85 Mb, and 99.08% (190.35 Mb) of the assembly is located on four chromosomes. The BUSCO analysis of our assembly indicates a completeness of 97.8% (n = 1,367), including 1,307 (95.6%) single-copy BUSCOs and 30 (2.2%) duplicated BUSCOs. Additionally, we annotated a total of 13,073 protein-coding genes, 18.43% (35.40 Mb) repetitive elements, and 376 non-coding RNAs. Our study is the first time to report the chromosome-scale genome for the species of A. aphidimyza. It provides a valuable genomic resource for the molecular study of A. aphidimyza.
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Diptera / Genome, Insect Limits: Animals Language: En Journal: Sci Data Year: 2024 Document type: Article Affiliation country: Country of publication:
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Diptera / Genome, Insect Limits: Animals Language: En Journal: Sci Data Year: 2024 Document type: Article Affiliation country: Country of publication: