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Janthinobacterium violaceinigrum sp. nov., Janthinobacterium aquaticum sp. nov. and Janthinobacterium rivuli sp. nov., isolated from a subtropical stream in China.
Lu, Huibin; Deng, Tongchu; Cai, Zhipeng; Liu, Feifei; Yang, Xunan; Wang, Yonghong; Xu, Meiying.
Affiliation
  • Lu H; State Key Laboratory of Applied Microbiology Southern China, Guangzhou 510070, PR China.
  • Deng T; Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Guangdong Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou 510070, PR China.
  • Cai Z; Guangdong Open Laboratory of Applied Microbiology, Guangzhou 510070, PR China.
  • Liu F; Guangdong Open Laboratory of Applied Microbiology, Guangzhou 510070, PR China.
  • Yang X; State Key Laboratory of Applied Microbiology Southern China, Guangzhou 510070, PR China.
  • Wang Y; Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Guangdong Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou 510070, PR China.
  • Xu M; Guangdong Open Laboratory of Applied Microbiology, Guangzhou 510070, PR China.
Int J Syst Evol Microbiol ; 70(4): 2719-2725, 2020 Apr.
Article de En | MEDLINE | ID: mdl-32176602
Four strains assigned the names FT13WT, FT14W, FT58WT and FT68WT were isolated from a subtropical stream in PR China. All the strains were Gram-stain-negative, catalase- and oxidase-positive, rod-shaped and motile with flagella. Comparisons based on 16S rRNA gene sequences showed that strains FT13WT, FT14W, FT58WT and FT68WT belonged to genus Janthinobacterium and shared 16S rRNA gene similarities in the range of 98.8-99.7 % with Janthinobacterium lividum DSM 1522T, Janthinobacterium agaricidamnosum DSM 9628T and 'Janthinobacterium svalbardensis JA-1', respectively. The calculated pairwise average nucleotide identity (ANI) values among the genomes of above seven strains were in the range of 79.0-92.2 %, except that the ANI value was 96.8 % between strain FT13WT and FT14W. The respiratory quinone of strains FT13WT, FT14W, FT58WT and FT68WT was determined to be Q-8. The major fatty acids were C16 : 1 ω7c, C16 : 0, C18 : 1 ω7c and C12 : 0. The polar lipids included phosphatidylethanolamine, phosphatidylglycerol and one unidentified phospholipid. The genome sizes of strains FT13WT, FT14W, FT58WT and FT68WT were 6.45, 6.38, 5.73 and 6.37 Mbp with G+C contents of 63.4, 63.7, 61.6 and 63.1 mol%, respectively. Combining phenotypic, biochemical, genotypic and ANI data, strain FT13WT and FT14W should belong to the same species. The four strains were considered to represent three novel species within genus Janthinobacterium, for which the names Janthinobacterium violaceinigrum sp. nov. (type strain FT13WT=GDMCC 1.1638T=KACC 21319T), Janthinobacterium aquaticum sp. nov. (FT58WT=GDMCC 1.1676T=KACC 21468T) and Janthinobacterium rivuli sp. nov. (FT68WT=GDMCC 1.1677T=KACC 21469T) are proposed.
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Texte intégral: 1 Collection: 01-internacional Base de données: MEDLINE Sujet principal: Phylogenèse / Oxalobacteraceae / Rivières Pays/Région comme sujet: Asia Langue: En Journal: Int J Syst Evol Microbiol Sujet du journal: MICROBIOLOGIA Année: 2020 Type de document: Article Pays de publication: Royaume-Uni

Texte intégral: 1 Collection: 01-internacional Base de données: MEDLINE Sujet principal: Phylogenèse / Oxalobacteraceae / Rivières Pays/Région comme sujet: Asia Langue: En Journal: Int J Syst Evol Microbiol Sujet du journal: MICROBIOLOGIA Année: 2020 Type de document: Article Pays de publication: Royaume-Uni