Hierarchical discovery of large-scale and focal copy number alterations in low-coverage cancer genomes.

Khalil, Ahmed Ibrahim Samir; Khyriem, Costerwell; Chattopadhyay, Anupam; Sanyal, Amartya

Khalil, Ahmed Ibrahim Samir; Khyriem, Costerwell; Chattopadhyay, Anupam; Sanyal, Amartya.

Affiliation

Khalil AIS; School of Computer Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore, 639798, Singapore.
Khyriem C; School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore, 637551, Singapore.
Chattopadhyay A; School of Computer Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore, 639798, Singapore. anupam@ntu.edu.sg.
Sanyal A; School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore, 637551, Singapore. asanyal@ntu.edu.sg.

BMC Bioinformatics ; 21(1): 147, 2020 Apr 16.

Article de En | MEDLINE | ID: mdl-32299346

Sujet(s)
Mots clés

Cancer; Copy number detection tool; DNA copy number alteration; Focal amplification and deletion; Genome sequence analysis; Read depth; Segmental aneuploidy; Simulated copy number profile

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Texte intégral: 1 Collection: 01-internacional Base de données: MEDLINE Sujet principal: Algorithmes / Variations de nombre de copies de segment d'ADN / Séquençage du génome entier / Tumeurs Limites: Humans Langue: En Journal: BMC Bioinformatics Sujet du journal: INFORMATICA MEDICA Année: 2020 Type de document: Article Pays d'affiliation: Singapour Pays de publication: Royaume-Uni

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