Metagenome-assembled genome binning methods with short reads disproportionately fail for plasmids and genomic Islands.

Maguire, Finlay; Jia, Baofeng; Gray, Kristen L; Lau, Wing Yin Venus; Beiko, Robert G; Brinkman, Fiona S L

Maguire, Finlay; Jia, Baofeng; Gray, Kristen L; Lau, Wing Yin Venus; Beiko, Robert G; Brinkman, Fiona S L.

Affiliation

Maguire F; Faculty of Computer Science, Dalhousie University, 6050 University Avenue, Halifax, Nova Scotia, B3H 4R2, Canada.
Jia B; Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada.
Gray KL; Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada.
Lau WYV; Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada.
Beiko RG; Faculty of Computer Science, Dalhousie University, 6050 University Avenue, Halifax, Nova Scotia, B3H 4R2, Canada.
Brinkman FSL; Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada.

Microb Genom ; 6(10)2020 10.

Article de En | MEDLINE | ID: mdl-33001022

Sujet(s)
Mots clés

antimicrobial resistance; genomic islands; metagenome-assembled genomes; metagenomics; mobile genetic elements

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Texte intégral: 1 Collection: 01-internacional Base de données: MEDLINE Sujet principal: Plasmides / Bactéries / Ilots génomiques / Métagénome / Métagénomique Type d'étude: Prognostic_studies Langue: En Journal: Microb Genom Année: 2020 Type de document: Article Pays d'affiliation: Canada Pays de publication: Royaume-Uni

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