Mapping nucleosome and chromatin architectures: A survey of computational methods.

Fang, Kun; Wang, Junbai; Liu, Lu; Jin, Victor X

Fang, Kun; Wang, Junbai; Liu, Lu; Jin, Victor X.

Affiliation

Fang K; Institute for Health and Equity, MCW Cancer Center, and Mellowes Center for Genome Science and Precision Medicine, Medical College of Wisconsin, Milwaukee, WI, USA.
Wang J; Department of Clinical Molecular Biology, University of Oslo and Akershus University Hospital, Lørenskog, Norway.
Liu L; Department of Computer Science, North Dakota State University, Fargo, ND, USA.
Jin VX; Institute for Health and Equity, MCW Cancer Center, and Mellowes Center for Genome Science and Precision Medicine, Medical College of Wisconsin, Milwaukee, WI, USA.

Comput Struct Biotechnol J ; 20: 3955-3962, 2022.

Article de En | MEDLINE | ID: mdl-35950186

Mots clés

3D, three dimensional; ATAC-seq, assay for transposase-accessible chromatin using sequencing; CTCF, CCCTC-binding factor; ChIA-PET, chromatin interaction analysis by paired-end tag sequencing; ChIP-seq, chromatin immunoprecipitation sequencing; Chromatin architectures; Computational methods; ICE, iterative correction; MNase, micrococcal nuclease; MPE-seq, methidiumpropyl-EDTA sequencing; Mb, megabases; Micro-C, micrococcal nuclease applied chromosome conformation capture; Nucleosome; PCA, principle component analysis; PF, pioneer factor; TAD, topologically associating domain; TCC, tethered chromosome conformation capture; TF, transcription factor

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Texte intégral: 1 Collection: 01-internacional Base de données: MEDLINE Type d'étude: Prognostic_studies Langue: En Journal: Comput Struct Biotechnol J Année: 2022 Type de document: Article Pays d'affiliation: États-Unis d'Amérique Pays de publication: Pays-Bas

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