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Biocatalytic control of site-selectivity and chain length-selectivity in radical amino acid halogenases.
Kissman, Elijah N; Neugebauer, Monica E; Sumida, Kiera H; Swenson, Cameron V; Sambold, Nicholas A; Marchand, Jorge A; Millar, Douglas C; Chang, Michelle C Y.
Affiliation
  • Kissman EN; Department of Chemistry, University of California, Berkeley, CA 94720.
  • Neugebauer ME; Department of Chemical and Biomolecular Engineering, University of California, Berkeley, CA 94720.
  • Sumida KH; Department of Chemistry, University of California, Berkeley, CA 94720.
  • Swenson CV; Department of Chemistry, University of California, Berkeley, CA 94720.
  • Sambold NA; Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720.
  • Marchand JA; Department of Chemical and Biomolecular Engineering, University of California, Berkeley, CA 94720.
  • Millar DC; Department of Chemical and Biomolecular Engineering, University of California, Berkeley, CA 94720.
  • Chang MCY; Department of Chemistry, University of California, Berkeley, CA 94720.
Proc Natl Acad Sci U S A ; 120(12): e2214512120, 2023 03 21.
Article de En | MEDLINE | ID: mdl-36913566
ABSTRACT
Biocatalytic C-H activation has the potential to merge enzymatic and synthetic strategies for bond formation. FeII/αKG-dependent halogenases are particularly distinguished for their ability both to control selective C-H activation as well as to direct group transfer of a bound anion along a reaction axis separate from oxygen rebound, enabling the development of new transformations. In this context, we elucidate the basis for the selectivity of enzymes that perform selective halogenation to yield 4-Cl-lysine (BesD), 5-Cl-lysine (HalB), and 4-Cl-ornithine (HalD), allowing us to probe how site-selectivity and chain length selectivity are achieved. We now report the crystal structure of the HalB and HalD, revealing the key role of the substrate-binding lid in positioning the substrate for C4 vs C5 chlorination and recognition of lysine vs ornithine. Targeted engineering of the substrate-binding lid further demonstrates that these selectivities can be altered or switched, showcasing the potential to develop halogenases for biocatalytic applications.
Sujet(s)
Mots clés

Texte intégral: 1 Collection: 01-internacional Base de données: MEDLINE Sujet principal: Acides aminés / Lysine Langue: En Journal: Proc Natl Acad Sci U S A Année: 2023 Type de document: Article

Texte intégral: 1 Collection: 01-internacional Base de données: MEDLINE Sujet principal: Acides aminés / Lysine Langue: En Journal: Proc Natl Acad Sci U S A Année: 2023 Type de document: Article
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