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A five-safes approach to a secure and scalable genomics data repository.
Shih, Chih Chuan; Chen, Jieqi; Lee, Ai Shan; Bertin, Nicolas; Hebrard, Maxime; Khor, Chiea Chuen; Li, Zheng; Juan Tan, Joanna Hui; Meah, Wee Yang; Peh, Su Qin; Mok, Shi Qi; Sim, Kar Seng; Liu, Jianjun; Wang, Ling; Wong, Eleanor; Li, Jingmei; Tin, Aung; Cheng, Ching-Yu; Heng, Chew-Kiat; Yuan, Jian-Min; Koh, Woon-Puay; Saw, Seang Mei; Friedlander, Yechiel; Sim, Xueling; Chai, Jin Fang; Chong, Yap Seng; Davila, Sonia; Goh, Liuh Ling; Lee, Eng Sing; Wong, Tien Yin; Karnani, Neerja; Leong, Khai Pang; Yeo, Khung Keong; Chambers, John C; Lim, Su Chi; Goh, Rick Siow Mong; Tan, Patrick; Dorajoo, Rajkumar.
Affiliation
  • Shih CC; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
  • Chen J; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
  • Lee AS; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
  • Bertin N; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
  • Hebrard M; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
  • Khor CC; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
  • Li Z; Singapore Eye Research Institute, Singapore National Eye Centre, Singapore, Republic of Singapore.
  • Juan Tan JH; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
  • Meah WY; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
  • Peh SQ; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
  • Mok SQ; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
  • Sim KS; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
  • Liu J; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
  • Wang L; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
  • Wong E; Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Republic of Singapore.
  • Li J; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
  • Tin A; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
  • Cheng CY; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore.
  • Heng CK; Singapore Eye Research Institute, Singapore National Eye Centre, Singapore, Republic of Singapore.
  • Yuan JM; Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Republic of Singapore.
  • Koh WP; Duke-NUS Medical School, Singapore, Republic of Singapore.
  • Saw SM; Singapore National Eye Centre, Singapore, Republic of Singapore.
  • Friedlander Y; Singapore Eye Research Institute, Singapore National Eye Centre, Singapore, Republic of Singapore.
  • Sim X; Duke-NUS Medical School, Singapore, Republic of Singapore.
  • Chai JF; Department of Paediatrics, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Republic of Singapore.
  • Chong YS; Khoo Teck Puat - National University Children's Medical Institute, National University Health System, Singapore, Republic of Singapore.
  • Davila S; Department of Epidemiology, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA, USA.
  • Goh LL; UPMC Hillman Cancer Center, University of Pittsburgh, Pittsburgh, PA, USA.
  • Lee ES; Healthy Longevity Translational Research Programme, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Republic of Singapore.
  • Wong TY; Singapore Institute for Clinical Sciences (SICS), Agency for Science, Technology and Research (A∗STAR), Brenner Centre for Molecular Medicine, 30 Medical Drive, Singapore 117609, Republic of Singapore.
  • Karnani N; Singapore Eye Research Institute, Singapore National Eye Centre, Singapore, Republic of Singapore.
  • Leong KP; Duke-NUS Medical School, Singapore, Republic of Singapore.
  • Yeo KK; Saw Swee Hock School of Public Health, National University of Singapore, Singapore, Republic of Singapore.
  • Chambers JC; Braun School of Public Health, Hebrew University of Jerusalem, Jerusalem, Israel.
  • Lim SC; Saw Swee Hock School of Public Health, National University of Singapore, Singapore, Republic of Singapore.
  • Goh RSM; Saw Swee Hock School of Public Health, National University of Singapore, Singapore, Republic of Singapore.
  • Tan P; Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Republic of Singapore.
  • Dorajoo R; Singapore Institute for Clinical Sciences (SICS), Agency for Science, Technology and Research (A∗STAR), Brenner Centre for Molecular Medicine, 30 Medical Drive, Singapore 117609, Republic of Singapore.
iScience ; 26(4): 106546, 2023 Apr 21.
Article de En | MEDLINE | ID: mdl-37123247
Genomic researchers increasingly utilize commercial cloud service providers (CSPs) to manage data and analytics needs. CSPs allow researchers to grow Information Technology (IT) infrastructure on demand to overcome bottlenecks when combining large datasets. However, without adequate security controls, the risk of unauthorized access may be higher for data stored on the cloud. Additionally, regulators are mandating data access patterns and specific security protocols for the storage and use of genomic data. While CSP provides tools for security and regulatory compliance, building the necessary controls required for cloud solutions is not trivial. Research Assets Provisioning and Tracking Online Repository (RAPTOR) by the Genome Institute of Singapore is a cloud-native genomics data repository and analytics platform that implements a "five-safes" framework to provide security and governance controls to data contributors and users, leveraging CSP for sharing and analysis of genomic datasets without the risk of security breaches or running afoul of regulations.
Mots clés

Texte intégral: 1 Collection: 01-internacional Base de données: MEDLINE Langue: En Journal: IScience Année: 2023 Type de document: Article Pays de publication: États-Unis d'Amérique

Texte intégral: 1 Collection: 01-internacional Base de données: MEDLINE Langue: En Journal: IScience Année: 2023 Type de document: Article Pays de publication: États-Unis d'Amérique