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Co-Clinical Imaging Metadata Information (CIMI) for Cancer Research to Promote Open Science, Standardization, and Reproducibility in Preclinical Imaging.
Moore, Stephen M; Quirk, James D; Lassiter, Andrew W; Laforest, Richard; Ayers, Gregory D; Badea, Cristian T; Fedorov, Andriy Y; Kinahan, Paul E; Holbrook, Matthew; Larson, Peder E Z; Sriram, Renuka; Chenevert, Thomas L; Malyarenko, Dariya; Kurhanewicz, John; Houghton, A McGarry; Ross, Brian D; Pickup, Stephen; Gee, James C; Zhou, Rong; Gammon, Seth T; Manning, Henry Charles; Roudi, Raheleh; Daldrup-Link, Heike E; Lewis, Michael T; Rubin, Daniel L; Yankeelov, Thomas E; Shoghi, Kooresh I.
Affiliation
  • Moore SM; Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, MO 63110, USA.
  • Quirk JD; Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, MO 63110, USA.
  • Lassiter AW; Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, MO 63110, USA.
  • Laforest R; Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, MO 63110, USA.
  • Ayers GD; Department of Biostatistics, Vanderbilt University, Nashville, TN 37235, USA.
  • Badea CT; Quantitative Imaging and Analysis Lab, Department of Radiology, Duke University, Durham, NC 27708, USA.
  • Fedorov AY; Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA.
  • Kinahan PE; Department of Radiology, University of Washington, Seattle, WA 98195, USA.
  • Holbrook M; Quantitative Imaging and Analysis Lab, Department of Radiology, Duke University, Durham, NC 27708, USA.
  • Larson PEZ; Department of Radiology and Biomedical Imaging, University of California, San Francisco, CA 94143, USA.
  • Sriram R; Department of Radiology and Biomedical Imaging, University of California, San Francisco, CA 94143, USA.
  • Chenevert TL; Department of Radiology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
  • Malyarenko D; Department of Radiology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
  • Kurhanewicz J; Department of Radiology and Biomedical Imaging, University of California, San Francisco, CA 94143, USA.
  • Houghton AM; Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
  • Ross BD; Department of Radiology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
  • Pickup S; Department of Radiology, Abramson Cancer Center, University of Pennsylvania, Philadelphia, PA 19104, USA.
  • Gee JC; Department of Radiology, Abramson Cancer Center, University of Pennsylvania, Philadelphia, PA 19104, USA.
  • Zhou R; Department of Radiology, Abramson Cancer Center, University of Pennsylvania, Philadelphia, PA 19104, USA.
  • Gammon ST; Department of Cancer Systems Imaging, Division of Diagnostic Imaging, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.
  • Manning HC; Department of Cancer Systems Imaging, Division of Diagnostic Imaging, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.
  • Roudi R; Department of Radiology, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Daldrup-Link HE; Department of Radiology, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Lewis MT; Dan L Duncan Comprehensive Cancer Center, Departments of Molecular and Cellular Biology and Radiology, Baylor College of Medicine, Houston, TX 77030, USA.
  • Rubin DL; Departments of Biomedical Data Science, Radiology and Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Yankeelov TE; Departments of Biomedical Engineering, Diagnostic Medicine and Oncology, Oden Institute for Computational and Engineering Sciences, Livestrong Cancer Institutes, The University of Texas at Austin, Austin, TX 78712, USA.
  • Shoghi KI; Department of Imaging Physics, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.
Tomography ; 9(3): 995-1009, 2023 05 11.
Article de En | MEDLINE | ID: mdl-37218941
ABSTRACT
Preclinical imaging is a critical component in translational research with significant complexities in workflow and site differences in deployment. Importantly, the National Cancer Institute's (NCI) precision medicine initiative emphasizes the use of translational co-clinical oncology models to address the biological and molecular bases of cancer prevention and treatment. The use of oncology models, such as patient-derived tumor xenografts (PDX) and genetically engineered mouse models (GEMMs), has ushered in an era of co-clinical trials by which preclinical studies can inform clinical trials and protocols, thus bridging the translational divide in cancer research. Similarly, preclinical imaging fills a translational gap as an enabling technology for translational imaging research. Unlike clinical imaging, where equipment manufacturers strive to meet standards in practice at clinical sites, standards are neither fully developed nor implemented in preclinical imaging. This fundamentally limits the collection and reporting of metadata to qualify preclinical imaging studies, thereby hindering open science and impacting the reproducibility of co-clinical imaging research. To begin to address these issues, the NCI co-clinical imaging research program (CIRP) conducted a survey to identify metadata requirements for reproducible quantitative co-clinical imaging. The enclosed consensus-based report summarizes co-clinical imaging metadata information (CIMI) to support quantitative co-clinical imaging research with broad implications for capturing co-clinical data, enabling interoperability and data sharing, as well as potentially leading to updates to the preclinical Digital Imaging and Communications in Medicine (DICOM) standard.
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Texte intégral: 1 Collection: 01-internacional Base de données: MEDLINE Sujet principal: Métadonnées / Tumeurs Type d'étude: Diagnostic_studies / Guideline / Prognostic_studies Limites: Animals / Humans Langue: En Journal: Tomography Année: 2023 Type de document: Article Pays d'affiliation: États-Unis d'Amérique

Texte intégral: 1 Collection: 01-internacional Base de données: MEDLINE Sujet principal: Métadonnées / Tumeurs Type d'étude: Diagnostic_studies / Guideline / Prognostic_studies Limites: Animals / Humans Langue: En Journal: Tomography Année: 2023 Type de document: Article Pays d'affiliation: États-Unis d'Amérique