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Whole genomes from bacteria collected at diagnostic units around the world 2020.
Nag, Sidsel; Larsen, Gunhild; Szarvas, Judit; Birkedahl, Laura Elmlund Kohl; Gulyás, Gábor Máté; Ciok, Wojchiech Jakub; Lagermann, Timmie Mikkel; Tafaj, Silva; Bradbury, Susan; Collignon, Peter; Daley, Denise; Dougnon, Victorien; Fabiyi, Kafayath; Coulibaly, Boubacar; Dembélé, René; Nikiema, Georgette; Magloire, Natama; Ouindgueta, Isidore Juste; Hossain, Zenat Zebin; Begum, Anowara; Donchev, Deyan; Diggle, Mathew; Turnbull, LeeAnn; Lévesque, Simon; Berlinger, Livia; Sogaard, Kirstine Kobberoe; Guevara, Paula Diaz; Valderrama, Carolina Duarte; Maikanti, Panagiota; Amlerova, Jana; Drevinek, Pavel; Tkadlec, Jan; Dilas, Milica; Kaasch, Achim; Westh, Henrik Torkil; Bachtarzi, Mohamed Azzedine; Amhis, Wahiba; Salazar, Carolina Elisabeth Satán; Villacis, JoséEduardo; Lúzon, Mária Angeles Dominguez; Palau, Dámaris Berbel; Duployez, Claire; Paluche, Maxime; Asante-Sefa, Solomon; Moller, Mie; Ip, Margaret; Marekovic, Ivana; Pál-Sonnevend, Agnes; Cocuzza, Clementiza Elvezia; Dambrauskiene, Asta.
Affiliation
  • Nag S; National Food Institute, Technical University of Denmark, Kemitorvet, Kgs, Lyngby, 2800, Denmark. jassd_nf@hotmail.com.
  • Larsen G; National Food Institute, Technical University of Denmark, Kemitorvet, Kgs, Lyngby, 2800, Denmark.
  • Szarvas J; National Food Institute, Technical University of Denmark, Kemitorvet, Kgs, Lyngby, 2800, Denmark.
  • Birkedahl LEK; National Food Institute, Technical University of Denmark, Kemitorvet, Kgs, Lyngby, 2800, Denmark.
  • Gulyás GM; National Food Institute, Technical University of Denmark, Kemitorvet, Kgs, Lyngby, 2800, Denmark.
  • Ciok WJ; National Food Institute, Technical University of Denmark, Kemitorvet, Kgs, Lyngby, 2800, Denmark.
  • Lagermann TM; National Food Institute, Technical University of Denmark, Kemitorvet, Kgs, Lyngby, 2800, Denmark.
  • Tafaj S; Microbiology Department, University Hospital "Shefqet Ndroqi", Rruga Dr. Shefqet Ndroqi. Sauk, Tirana, 1044, Albania.
  • Bradbury S; Microbiology Department, Canberra Hospital, Gilmore Cresent, Garran, 2605, Australian Capital Territory, Australia.
  • Collignon P; Microbiology Department, Canberra Hospital, Gilmore Cresent, Garran, 2605, Australian Capital Territory, Australia.
  • Daley D; Department of Microbiology, PathWest Laboratory Medicine, Fiona Stanley Hospital, 9 Robin Warren Drive, Murdoch, 6150, Western Australia, Australia.
  • Dougnon V; Research Unit in Applied Microbiology and Pharmacology of Natural Substances, Polytechnic School of Abomey-Calavi, University of Abomey-Calavi, 01 PO Box, Abomey-Calavi, 2009, Cotonou, Benin.
  • Fabiyi K; Research Unit in Applied Microbiology and Pharmacology of Natural Substances, Polytechnic School of Abomey-Calavi, University of Abomey-Calavi, 01 PO Box, Abomey-Calavi, 2009, Cotonou, Benin.
  • Coulibaly B; Department of Laboratory, Nouna Health Research Centre, Rue Namory Keita, Nouna, Burkina Faso.
  • Dembélé R; Training and Research Unit in Applied Sciences and Technologies/Biochemistry-microbiology, University of Dedougou, Dedougou, 176, Boucle du Mouhoun, Burkina Faso.
  • Nikiema G; Training and Research Unit in Applied Sciences and Technologies/Biochemistry-microbiology, University of Dedougou, Dedougou, 176, Boucle du Mouhoun, Burkina Faso.
  • Magloire N; Clinical Research Unit of Nanoro, National Institutes of Medical Research, Ouagadougou, 176, Burkina Faso.
  • Ouindgueta IJ; Department, University of Joseph KI-ZERBO, Street, Ouagadouogou, Burkina Faso.
  • Hossain ZZ; Department of Microbiology, University of Dhaka, Dhaka, 1000, Bangladesh.
  • Begum A; Department of Microbiology, University of Dhaka, Dhaka, 1000, Bangladesh.
  • Donchev D; Clinical Laboratory of Microbiology and Virology, University Hospital "Lozenetz", Str. Kozyak 1, Sofia, 1407, Sofia, Bulgaria.
  • Diggle M; Alberta Precision Laboratories, Alberta, Canada.
  • Turnbull L; Alberta Precision Laboratories, Alberta, Canada.
  • Lévesque S; Service de microbiologie, Centre Integré Universitaire de Santé et de services sociaux de l'Estrie - Centre Hospitalier Universitaire de Sherbrooke, 3001 12è avenue Nord, Sherbrooke, J1H 5N4, Québec, Canada.
  • Berlinger L; Department, Bioanalytica AG, Luzern, 6006, Switzerland.
  • Sogaard KK; Division of Clinical Bacteriology and Mycology, University Hospital Basel, Petersgraben 4, Basel, 4031, Switzerland.
  • Guevara PD; Microbiology Group, Instituto Nacional de Salud, Avenida Calle 26·51-20 CAN, Bogotá, 111321, Colombia.
  • Valderrama CD; Microbiology Group, Instituto Nacional de Salud, Avenida Calle 26·51-20 CAN, Bogotá, 111321, Colombia.
  • Maikanti P; Charalampous, Microbiology Department, National Reference Laboratory for Antimicrobial Resistance Surveillance, Nicosia General Hospital, 215, Paleos Dromos Lefkosia-Lemesos str., Strovolos, 2029, Nicosia, Cyprus.
  • Amlerova J; Department of Microbiology, University Hospital in Plzen, Edvarda Benese 1128/13, Plzen, 305 99, Czech Republic.
  • Drevinek P; Department of Medical Microbiology, Motol University Hospital, V Uvalu 84, Prague, 15006, Czech Republic.
  • Tkadlec J; Department of Medical Microbiology, Motol University Hospital, V Uvalu 84, Prague, 15006, Czech Republic.
  • Dilas M; Otto-von-Guericke University, Magdebourg, Germany.
  • Kaasch A; Otto-von-Guericke University, Magdebourg, Germany.
  • Westh HT; Klinisk Mikrobiologisk Afdeling, Hvidovre Hospital, Kettegårds Allé, Hvidovre, 2650, Denmark.
  • Bachtarzi MA; Laboratoire de Microbiologie Clinique, Centre Hospitalo-universitaire, 1 place du 1er Mai 1945, Algiers, 16000, Algeria.
  • Amhis W; Laboratoire de Microbiologie Clinique, Centre Hospitalo-universitaire, 1 place du 1er Mai 1945, Algiers, 16000, Algeria.
  • Salazar CES; National Reference Center for Antimicrobial Resistance, National Institute of Public Health Research "Dr. Leopoldo Izquieta Pérez", Iquique N14-285, Quito, 170403, Pichicha, Ecuador.
  • Villacis J; Centro de Investigación para la Salud en América Latina (CISeAL), Pontificia Universidad Católica del Ecuador, Quinto, 1701-2184, Pichincha, Ecuador.
  • Lúzon MAD; Department of Pathology and Experimental Therapy, Universitat de Barcelona, Barcelona, Spain.
  • Palau DB; Microbiology Department, Hospital de Bellvitge, Barcelona, 10587, Spain.
  • Duployez C; Institute of Microbiology, Centre Hospitalier Universitaire de Lille, Rue du Pr. Jules Leclercq, Lille, 59037, France.
  • Paluche M; Bacteriology laboratory, Centre hospitalier de Valenciennes, Avenue Désandrouin, Valenciennes, 59300, France.
  • Asante-Sefa S; Sekondi Public Health Laboratory, Ghana Health Service, Effia Nkwanta Regional Hospital, Effia Nkwanta Regional Hospital, Takoradi, Ghana.
  • Moller M; Dronning Ingrids Hospital, Nuuk, Greenland.
  • Ip M; Chinese University of Hong Kong, Shatin, Hong Kong.
  • Marekovic I; Department of Clinical and Molecular Microbiology, University Hospital Centre Zagreb, Kispaticeva 12, Zagreb, 10000, Croatia.
  • Pál-Sonnevend A; Medical Microbiology and Immunology, University of Pecs Medical School, Szigeti ut 12, Pecs, 7631, Hungary.
  • Cocuzza CE; Department of Medicine and Surgery, University of Milano-Bicocca, Milan, Italy.
  • Dambrauskiene A; Laboratory Medicine Department, Hospital of Lithuanian University of Health Sciences Kauno klinikos, Eiveniu Str. 2, Kaunas, 50161, Lithuania.
Sci Data ; 10(1): 628, 2023 09 16.
Article de En | MEDLINE | ID: mdl-37717051
ABSTRACT
The Two Weeks in the World research project has resulted in a dataset of 3087 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units in 35 countries around the world during 2020. A relational database is available with metadata and summary data from selected bioinformatic analysis, such as species prediction and identification of acquired resistance genes.
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Texte intégral: 1 Collection: 01-internacional Base de données: MEDLINE Sujet principal: Bactéries / Génome bactérien Type d'étude: Diagnostic_studies Langue: En Journal: Sci Data Année: 2023 Type de document: Article Pays d'affiliation: Danemark
Texte intégral
Ajouter à My VHL
Imprimer
XML
PubMed Links
Recherche sur Google

Texte intégral: 1 Collection: 01-internacional Base de données: MEDLINE Sujet principal: Bactéries / Génome bactérien Type d'étude: Diagnostic_studies Langue: En Journal: Sci Data Année: 2023 Type de document: Article Pays d'affiliation: Danemark