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A perspective on neuroscience data standardization with Neurodata Without Borders.
Pierré, Andrea; Pham, Tuan; Pearl, Jonah; Datta, Sandeep Robert; Ritt, Jason T; Fleischmann, Alexander.
Affiliation
  • Pierré A; Department of Neuroscience, Division of Biology and Medicine, Brown University, Providence, USA.
  • Pham T; The Robert J. and Nancy D. Carney Institute for Brain Science, Brown University, Providence, USA.
  • Pearl J; Department of Neuroscience, Division of Biology and Medicine, Brown University, Providence, USA.
  • Datta SR; The Robert J. and Nancy D. Carney Institute for Brain Science, Brown University, Providence, USA.
  • Ritt JT; Department of Neurobiology, Harvard Medical School, Boston, USA.
  • Fleischmann A; Department of Neurobiology, Harvard Medical School, Boston, USA.
ArXiv ; 2024 Jan 22.
Article de En | MEDLINE | ID: mdl-37873012
ABSTRACT
Neuroscience research has evolved to generate increasingly large and complex experimental data sets, and advanced data science tools are taking on central roles in neuroscience research. Neurodata Without Borders (NWB), a standard language for neurophysiology data, has recently emerged as a powerful solution for data management, analysis, and sharing. We here discuss our labs' efforts to implement NWB data science pipelines. We describe general principles and specific use cases that illustrate successes, challenges, and non-trivial decisions in software engineering. We hope that our experience can provide guidance for the neuroscience community and help bridge the gap between experimental neuroscience and data science.

Texte intégral: 1 Collection: 01-internacional Base de données: MEDLINE Langue: En Journal: ArXiv Année: 2024 Type de document: Article Pays d'affiliation: États-Unis d'Amérique

Texte intégral: 1 Collection: 01-internacional Base de données: MEDLINE Langue: En Journal: ArXiv Année: 2024 Type de document: Article Pays d'affiliation: États-Unis d'Amérique