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Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4.
Neupane, Saraswoti; Goodwin, Lynne A; Högberg, Nils; Kyrpides, Nikos C; Alström, Sadhna; Bruce, David; Quintana, Beverly; Munk, Christine; Daligault, Hajnalka; Teshima, Hazuki; Davenport, Karen; Reitenga, Krista; Green, Lance; Chain, Patrick; Erkkila, Tracy; Gu, Wei; Zhang, Xiaojing; Xu, Yan; Kunde, Yulia; Chertkov, Olga; Han, James; Han, Cliff; Detter, John C; Ivanova, Natalia; Pati, Amrita; Chen, Amy; Szeto, Ernest; Mavromatis, Kostas; Huntemann, Marcel; Nolan, Matt; Pitluck, Sam; Deshpande, Shweta; Markowitz, Victor; Pagani, Ioanna; Klenk, Hans-Peter; Woyke, Tanja; Finlay, Roger D.
Affiliation
  • Neupane S; Uppsala BioCenter, Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, Uppsala, Sweden.
  • Goodwin LA; Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
  • Högberg N; Uppsala BioCenter, Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, Uppsala, Sweden.
  • Kyrpides NC; DOE Joint Genome Institute, Walnut Creek, California, USA.
  • Alström S; Uppsala BioCenter, Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, Uppsala, Sweden.
  • Bruce D; Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
  • Quintana B; Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
  • Munk C; Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
  • Daligault H; Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
  • Teshima H; Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
  • Davenport K; Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
  • Reitenga K; Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
  • Green L; Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
  • Chain P; Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
  • Erkkila T; Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
  • Gu W; Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
  • Zhang X; Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
  • Xu Y; Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
  • Kunde Y; Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
  • Chertkov O; Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
  • Han J; DOE Joint Genome Institute, Walnut Creek, California, USA.
  • Han C; Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
  • Detter JC; Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
  • Ivanova N; DOE Joint Genome Institute, Walnut Creek, California, USA.
  • Pati A; DOE Joint Genome Institute, Walnut Creek, California, USA.
  • Chen A; DOE Joint Genome Institute, Walnut Creek, California, USA.
  • Szeto E; DOE Joint Genome Institute, Walnut Creek, California, USA.
  • Mavromatis K; DOE Joint Genome Institute, Walnut Creek, California, USA.
  • Huntemann M; DOE Joint Genome Institute, Walnut Creek, California, USA.
  • Nolan M; DOE Joint Genome Institute, Walnut Creek, California, USA.
  • Pitluck S; DOE Joint Genome Institute, Walnut Creek, California, USA.
  • Deshpande S; DOE Joint Genome Institute, Walnut Creek, California, USA.
  • Markowitz V; DOE Joint Genome Institute, Walnut Creek, California, USA.
  • Pagani I; DOE Joint Genome Institute, Walnut Creek, California, USA.
  • Klenk HP; Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
  • Woyke T; DOE Joint Genome Institute, Walnut Creek, California, USA.
  • Finlay RD; Uppsala BioCenter, Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, Uppsala, Sweden.
Stand Genomic Sci ; 8(3): 441-9, 2013 Jul 30.
Article in En | MEDLINE | ID: mdl-24501629
ABSTRACT
Serratia proteamaculans S4 (previously Serratia sp. S4), isolated from the rhizosphere of wild Equisetum sp., has the ability to stimulate plant growth and to suppress the growth of several soil-borne fungal pathogens of economically important crops. Here we present the non-contiguous, finished genome sequence of S. proteamaculans S4, which consists of a 5,324,944 bp circular chromosome and a 129,797 bp circular plasmid. The chromosome contains 5,008 predicted genes while the plasmid comprises 134 predicted genes. In total, 4,993 genes are assigned as protein-coding genes. The genome consists of 22 rRNA genes, 82 tRNA genes and 58 pseudogenes. This genome is a part of the project "Genomics of four rapeseed plant growth-promoting bacteria with antagonistic effect on plant pathogens" awarded through the 2010 DOE-JGI's Community Sequencing Program.
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Full text: 1 Collection: 01-internacional Database: MEDLINE Language: En Journal: Stand Genomic Sci Year: 2013 Document type: Article Affiliation country:
Fulltext
Add to My VHL
Print
XML
PubMed Links
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Full text: 1 Collection: 01-internacional Database: MEDLINE Language: En Journal: Stand Genomic Sci Year: 2013 Document type: Article Affiliation country: