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The RD-Connect Registry & Biobank Finder: a tool for sharing aggregated data and metadata among rare disease researchers.
Gainotti, Sabina; Torreri, Paola; Wang, Chiuhui Mary; Reihs, Robert; Mueller, Heimo; Heslop, Emma; Roos, Marco; Badowska, Dorota Mazena; de Paulis, Federico; Kodra, Yllka; Carta, Claudio; Martìn, Estrella Lopez; Miller, Vanessa Rangel; Filocamo, Mirella; Mora, Marina; Thompson, Mark; Rubinstein, Yaffa; Posada de la Paz, Manuel; Monaco, Lucia; Lochmüller, Hanns; Taruscio, Domenica.
Affiliation
  • Gainotti S; Bioethics Unit, Office of the President, Istituto Superiore di Sanità, Rome, Italy. sabina.gainotti@iss.it.
  • Torreri P; National Center for Rare Diseases, Istituto Superiore di Sanità, Rome, Italy. sabina.gainotti@iss.it.
  • Wang CM; National Center for Rare Diseases, Istituto Superiore di Sanità, Rome, Italy.
  • Reihs R; Fondazione Telethon, Milan, Italy.
  • Mueller H; Institute of Pathology, Medical University of Graz, Graz, Austria.
  • Heslop E; Institute of Pathology, Medical University of Graz, Graz, Austria.
  • Roos M; John Walton Muscular Dystrophy Research Centre, Institute of Genetic Medicine, Newcastle University, Newcastle, UK.
  • Badowska DM; Human Genetics Department, Leiden University Medical Center, Leiden, The Netherlands.
  • de Paulis F; John Walton Muscular Dystrophy Research Centre, Institute of Genetic Medicine, Newcastle University, Newcastle, UK.
  • Kodra Y; National Center for Rare Diseases, Istituto Superiore di Sanità, Rome, Italy.
  • Carta C; National Center for Rare Diseases, Istituto Superiore di Sanità, Rome, Italy.
  • Martìn EL; National Center for Rare Diseases, Istituto Superiore di Sanità, Rome, Italy.
  • Miller VR; Institute of Rare Diseases Research (IIER) & Centre for Biomedical Network Research on Rare Diseases (CIBERER), Institute of Health Carlos III, Madrid, Spain.
  • Filocamo M; Altavoice, San Mateo, CA, USA.
  • Mora M; Centro di diagnostica genetica e biochimica delle malattie metaboliche, Istituto Giannina Gaslini, Genoa, Italy.
  • Thompson M; Neuromuscular Diseases and Neuroimmunology Unit, Fondazione Istituto Neurologico C. Besta, Milan, Italy.
  • Rubinstein Y; Human Genetics Department, Leiden University Medical Center, Leiden, The Netherlands.
  • Posada de la Paz M; Office of Health Information Programs Development, National Library of Medicine (NLM), National Institutes of Health (NIH), Bethesda, MD, USA.
  • Monaco L; Institute of Rare Diseases Research (IIER) & Centre for Biomedical Network Research on Rare Diseases (CIBERER), Institute of Health Carlos III, Madrid, Spain.
  • Lochmüller H; Fondazione Telethon, Milan, Italy.
  • Taruscio D; John Walton Muscular Dystrophy Research Centre, Institute of Genetic Medicine, Newcastle University, Newcastle, UK.
Eur J Hum Genet ; 26(5): 631-643, 2018 05.
Article in En | MEDLINE | ID: mdl-29396563
In rare disease (RD) research, there is a huge need to systematically collect biomaterials, phenotypic, and genomic data in a standardized way and to make them findable, accessible, interoperable and reusable (FAIR). RD-Connect is a 6 years global infrastructure project initiated in November 2012 that links genomic data with patient registries, biobanks, and clinical bioinformatics tools to create a central research resource for RDs. Here, we present RD-Connect Registry & Biobank Finder, a tool that helps RD researchers to find RD biobanks and registries and provide information on the availability and accessibility of content in each database. The finder concentrates information that is currently sparse on different repositories (inventories, websites, scientific journals, technical reports, etc.), including aggregated data and metadata from participating databases. Aggregated data provided by the finder, if appropriately checked, can be used by researchers who are trying to estimate the prevalence of a RD, to organize a clinical trial on a RD, or to estimate the volume of patients seen by different clinical centers. The finder is also a portal to other RD-Connect tools, providing a link to the RD-Connect Sample Catalogue, a large inventory of RD biological samples available in participating biobanks for RD research. There are several kinds of users and potential uses for the RD-Connect Registry & Biobank Finder, including researchers collaborating with academia and the industry, dealing with the questions of basic, translational, and/or clinical research. As of November 2017, the finder is populated with aggregated data for 222 registries and 21 biobanks.
Subject(s)

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Computational Biology / Genomics / Rare Diseases / Metadata Type of study: Risk_factors_studies Limits: Humans Language: En Journal: Eur J Hum Genet Journal subject: GENETICA MEDICA Year: 2018 Document type: Article Affiliation country: Country of publication:

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Computational Biology / Genomics / Rare Diseases / Metadata Type of study: Risk_factors_studies Limits: Humans Language: En Journal: Eur J Hum Genet Journal subject: GENETICA MEDICA Year: 2018 Document type: Article Affiliation country: Country of publication: