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A mini-TGA protein modulates gene expression through heterogeneous association with transcription factors.
Tomaz, Spela; Petek, Marko; Lukan, Tjasa; Pogacar, Karmen; Stare, Katja; Teixeira Prates, Erica; Jacobson, Daniel A; Zrimec, Jan; Bajc, Gregor; Butala, Matej; Pompe Novak, Marusa; Dudley, Quentin; Patron, Nicola; Taler-Vercic, Ajda; Usenik, Aleksandra; Turk, Dusan; Prat, Salomé; Coll, Anna; Gruden, Kristina.
Affiliation
  • Tomaz S; Department of Biotechnology and Systems Biology, National Institute of Biology, 1000 Ljubljana, Slovenia.
  • Petek M; Jozef Stefan International Postgraduate School, 1000 Ljubljana, Slovenia.
  • Lukan T; Department of Biotechnology and Systems Biology, National Institute of Biology, 1000 Ljubljana, Slovenia.
  • Pogacar K; Department of Biotechnology and Systems Biology, National Institute of Biology, 1000 Ljubljana, Slovenia.
  • Stare K; Department of Biotechnology and Systems Biology, National Institute of Biology, 1000 Ljubljana, Slovenia.
  • Teixeira Prates E; Department of Biotechnology and Systems Biology, National Institute of Biology, 1000 Ljubljana, Slovenia.
  • Jacobson DA; Biosciences Division, Oak Ridge National Laboratory,, Oak Ridge, Tennessee 37831, USA.
  • Zrimec J; Biosciences Division, Oak Ridge National Laboratory,, Oak Ridge, Tennessee 37831, USA.
  • Bajc G; Department of Biotechnology and Systems Biology, National Institute of Biology, 1000 Ljubljana, Slovenia.
  • Butala M; Department of Biology, Biotechnical Faculty, University of Ljubljana, 1000 Ljubljana, Slovenia.
  • Pompe Novak M; Department of Biology, Biotechnical Faculty, University of Ljubljana, 1000 Ljubljana, Slovenia.
  • Dudley Q; Department of Biotechnology and Systems Biology, National Institute of Biology, 1000 Ljubljana, Slovenia.
  • Patron N; School for Viticulture and Enology, University of Nova Gorica, 5271 Vipava, Slovenia.
  • Taler-Vercic A; Earlham Institute, Norwich Research Park, Norwich NR4 7UZ, UK.
  • Usenik A; Earlham Institute, Norwich Research Park, Norwich NR4 7UZ, UK.
  • Turk D; Department of Biochemistry and Molecular and Structural Biology, Jozef Stefan Institute, 1000 Ljubljana, Slovenia.
  • Prat S; Faculty of Medicine, Institute of Biochemistry and Molecular Genetics, University of Ljubljana, 1000 Ljubljana, Slovenia.
  • Coll A; Department of Biochemistry and Molecular and Structural Biology, Jozef Stefan Institute, 1000 Ljubljana, Slovenia.
  • Gruden K; Centre of Excellence for Integrated Approaches in Chemistry and Biology of Proteins, 1000 Ljubljana, Slovenia.
Plant Physiol ; 191(3): 1934-1952, 2023 03 17.
Article in En | MEDLINE | ID: mdl-36517238
ABSTRACT
TGA (TGACG-binding) transcription factors, which bind their target DNA through a conserved basic region leucine zipper (bZIP) domain, are vital regulators of gene expression in salicylic acid (SA)-mediated plant immunity. Here, we investigated the role of StTGA2.1, a potato (Solanum tuberosum) TGA lacking the full bZIP, which we named a mini-TGA. Such truncated proteins have been widely assigned as loss-of-function mutants. We, however, confirmed that StTGA2.1 overexpression compensates for SA-deficiency, indicating a distinct mechanism of action compared with model plant species. To understand the underlying mechanisms, we showed that StTGA2.1 can physically interact with StTGA2.2 and StTGA2.3, while its interaction with DNA was not detected. We investigated the changes in transcriptional regulation due to StTGA2.1 overexpression, identifying direct and indirect target genes. Using in planta transactivation assays, we confirmed that StTGA2.1 interacts with StTGA2.3 to activate StPRX07, a member of class III peroxidases (StPRX), which are known to play role in immune response. Finally, via structural modeling and molecular dynamics simulations, we hypothesized that the compact molecular architecture of StTGA2.1 distorts DNA conformation upon heterodimer binding to enable transcriptional activation. This study demonstrates how protein truncation can lead to distinct functions and that such events should be studied carefully in other protein families.
Subject(s)

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Transcription Factors / Basic-Leucine Zipper Transcription Factors Type of study: Prognostic_studies / Risk_factors_studies Language: En Journal: Plant Physiol Year: 2023 Document type: Article Affiliation country:

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Transcription Factors / Basic-Leucine Zipper Transcription Factors Type of study: Prognostic_studies / Risk_factors_studies Language: En Journal: Plant Physiol Year: 2023 Document type: Article Affiliation country: