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The ENCODE Uniform Analysis Pipelines.
Hitz, Benjamin C; Jin-Wook, Lee; Jolanki, Otto; Kagda, Meenakshi S; Graham, Keenan; Sud, Paul; Gabdank, Idan; Strattan, J Seth; Sloan, Cricket A; Dreszer, Timothy; Rowe, Laurence D; Podduturi, Nikhil R; Malladi, Venkat S; Chan, Esther T; Davidson, Jean M; Ho, Marcus; Miyasato, Stuart; Simison, Matt; Tanaka, Forrest; Luo, Yunhai; Whaling, Ian; Hong, Eurie L; Lee, Brian T; Sandstrom, Richard; Rynes, Eric; Nelson, Jemma; Nishida, Andrew; Ingersoll, Alyssa; Buckley, Michael; Frerker, Mark; Kim, Daniel S; Boley, Nathan; Trout, Diane; Dobin, Alex; Rahmanian, Sorena; Wyman, Dana; Balderrama-Gutierrez, Gabriela; Reese, Fairlie; Durand, Neva C; Dudchenko, Olga; Weisz, David; Rao, Suhas S P; Blackburn, Alyssa; Gkountaroulis, Dimos; Sadr, Mahdi; Olshansky, Moshe; Eliaz, Yossi; Nguyen, Dat; Bochkov, Ivan; Shamim, Muhammad Saad.
Affiliation
  • Hitz BC; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Jin-Wook L; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Jolanki O; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Kagda MS; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Graham K; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Sud P; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Gabdank I; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Strattan JS; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Sloan CA; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Dreszer T; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Rowe LD; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Podduturi NR; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Malladi VS; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Chan ET; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Davidson JM; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Ho M; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Miyasato S; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Simison M; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Tanaka F; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Luo Y; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Whaling I; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Hong EL; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Lee BT; Genomics Institute, School of Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
  • Sandstrom R; Altius Institute for Biomedical Sciences, 2211 Elliott Avenue, 6th Floor, Seattle, WA 98121, USA.
  • Rynes E; Altius Institute for Biomedical Sciences, 2211 Elliott Avenue, 6th Floor, Seattle, WA 98121, USA.
  • Nelson J; Altius Institute for Biomedical Sciences, 2211 Elliott Avenue, 6th Floor, Seattle, WA 98121, USA.
  • Nishida A; Altius Institute for Biomedical Sciences, 2211 Elliott Avenue, 6th Floor, Seattle, WA 98121, USA.
  • Ingersoll A; Altius Institute for Biomedical Sciences, 2211 Elliott Avenue, 6th Floor, Seattle, WA 98121, USA.
  • Buckley M; Altius Institute for Biomedical Sciences, 2211 Elliott Avenue, 6th Floor, Seattle, WA 98121, USA.
  • Frerker M; Altius Institute for Biomedical Sciences, 2211 Elliott Avenue, 6th Floor, Seattle, WA 98121, USA.
  • Kim DS; Dept. of Genetics, Dept. of Computer Science, Stanford University, 240 Pasteur Drive, Palo Alto, CA 94304, USA.
  • Boley N; Dept. of Genetics, Dept. of Computer Science, Stanford University, 240 Pasteur Drive, Palo Alto, CA 94304, USA.
  • Trout D; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, 91125 USA.
  • Dobin A; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
  • Rahmanian S; Center for Complex Biological Systems, University of California, Irvine, Irvine, CA 92697, USA.
  • Wyman D; Center for Complex Biological Systems, University of California, Irvine, Irvine, CA 92697, USA.
  • Balderrama-Gutierrez G; Center for Complex Biological Systems, University of California, Irvine, Irvine, CA 92697, USA.
  • Reese F; Center for Complex Biological Systems, University of California, Irvine, Irvine, CA 92697, USA.
  • Durand NC; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
  • Dudchenko O; The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
  • Weisz D; Center for Theoretical Biological Physics, Rice University, Houston, TX 77030, USA.
  • Rao SSP; Department of Computer Science, Rice University, Houston, TX 77030, USA.
  • Blackburn A; The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
  • Gkountaroulis D; The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
  • Sadr M; The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
  • Olshansky M; Department of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Eliaz Y; Department of Medicine, University of California San Francisco, San Francisco, CA 94143, USA.
  • Nguyen D; The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
  • Bochkov I; Center for Theoretical Biological Physics, Rice University, Houston, TX 77030, USA.
  • Shamim MS; The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
bioRxiv ; 2023 Apr 06.
Article in En | MEDLINE | ID: mdl-37066421
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Full text: 1 Collection: 01-internacional Database: MEDLINE Language: En Journal: BioRxiv Year: 2023 Document type: Article Affiliation country: Country of publication:
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Full text: 1 Collection: 01-internacional Database: MEDLINE Language: En Journal: BioRxiv Year: 2023 Document type: Article Affiliation country: Country of publication: