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Extending the dynamic range of biomarker quantification through molecular equalization.
Newman, Sharon S; Wilson, Brandon D; Mamerow, Daniel; Wollant, Benjamin C; Nyein, Hnin; Rosenberg-Hasson, Yael; Maecker, Holden T; Eisenstein, Michael; Soh, H Tom.
Affiliation
  • Newman SS; Department of Bioengineering, Stanford University, Stanford, CA, 94305, USA.
  • Wilson BD; Department of Electrical Engineering, Stanford University, Stanford, CA, 94305, USA.
  • Mamerow D; Department of Chemical Engineering, Stanford University, Stanford, CA, 94305, USA.
  • Wollant BC; Department of Radiology, School of Medicine, Stanford University, Stanford, CA, 94305, USA.
  • Nyein H; Department of Electrical Engineering, Stanford University, Stanford, CA, 94305, USA.
  • Rosenberg-Hasson Y; Department of Radiology, School of Medicine, Stanford University, Stanford, CA, 94305, USA.
  • Maecker HT; Department of Electrical Engineering, Stanford University, Stanford, CA, 94305, USA.
  • Eisenstein M; Department of Radiology, School of Medicine, Stanford University, Stanford, CA, 94305, USA.
  • Soh HT; Institute for Immunity, Transplantation, and Infection, School of Medicine, Stanford University, Stanford, CA, 94305, USA.
Nat Commun ; 14(1): 4192, 2023 07 13.
Article in En | MEDLINE | ID: mdl-37443317
Precision medicine requires highly scalable methods of multiplexed biomarker quantification that can accurately describe patient physiology. Unfortunately, contemporary molecular detection methods are generally limited to a dynamic range of sensitivity spanning just 3-4 orders of magnitude, whereas the actual physiological dynamic range of the human plasma proteome spans more than 10 orders of magnitude. Current methods rely on sample splitting and differential dilution to compensate for this mismatch, but such measures greatly limit the reproducibility and scalability that can be achieved-in particular, the effects of non-linear dilution can greatly confound the analysis of multiplexed assays. We describe here a two-pronged strategy for equalizing the signal generated by each analyte in a multiplexed panel, thereby enabling simultaneous quantification of targets spanning a wide range of concentrations. We apply our 'EVROS' strategy to a proximity ligation assay and demonstrate simultaneous quantification of four analytes present at concentrations spanning from low femtomolar to mid-nanomolar levels. In this initial demonstration, we achieve a dynamic range spanning seven orders of magnitude in a single 5 µl sample of undiluted human serum, highlighting the opportunity to achieve sensitive, accurate detection of diverse analytes in a highly multiplexed fashion.
Subject(s)

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Reproducibility of Results Limits: Humans Language: En Journal: Nat Commun Journal subject: BIOLOGIA / CIENCIA Year: 2023 Document type: Article Affiliation country: Country of publication:

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Reproducibility of Results Limits: Humans Language: En Journal: Nat Commun Journal subject: BIOLOGIA / CIENCIA Year: 2023 Document type: Article Affiliation country: Country of publication: