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MulRF: a software package for phylogenetic analysis using multi-copy gene trees.
Bioinformatics ; 31(3): 432-3, 2015 Feb 01.
Artigo em Inglês | MEDLINE | ID: mdl-25273112
ABSTRACT

SUMMARY:

MulRF is a platform-independent software package for phylogenetic analysis using multi-copy gene trees. It seeks the species tree that minimizes the Robinson-Foulds (RF) distance to the input trees using a generalization of the RF distance to multi-labeled trees. The underlying generic tree distance measure and fast running time make MulRF useful for inferring phylogenies from large collections of gene trees, in which multiple evolutionary processes as well as phylogenetic error may contribute to gene tree discord. MulRF implements several features for customizing the species tree search and assessing the results, and it provides a user-friendly graphical user interface (GUI) with tree visualization. The species tree search is implemented in C++ and the GUI in Java Swing.

AVAILABILITY:

MulRF's executable as well as sample datasets and manual are available at http//genome.cs.iastate.edu/CBL/MulRF/, and the source code is available at https//github.com/ruchiherself/MulRFRepo. CONTACT ruchic@ufl.edu SUPPLEMENTARY INFORMATION Supplementary data are available at Bioinformatics online.
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Texto completo: Disponível Coleções: Bases de dados internacionais Base de dados: MEDLINE Assunto principal: Filogenia / Software / Análise de Sequência de DNA / Dosagem de Genes Limite: Humanos Idioma: Inglês Revista: Bioinformatics Assunto da revista: Informática Médica Ano de publicação: 2015 Tipo de documento: Artigo País de afiliação: Estados Unidos