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Chromosome-Scale Genome Assembly of the Resurrection Plant Acanthochlamys bracteata (Velloziaceae).
Gao, Zhi-Yuan; Li, Zhang-Hai; Lin, Dong-Liang; Jin, Xiao-Hua.
Afiliação
  • Gao ZY; State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, China.
  • Li ZH; University of Chinese Academy of Sciences, Beijing, China.
  • Lin DL; Institute of Pharmaceutical Biology and Biotechnology, University of Marburg, Marburg, Germany.
  • Jin XH; State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, China.
Genome Biol Evol ; 13(8)2021 08 03.
Article em En | MEDLINE | ID: mdl-34165527
ABSTRACT
Acanthochlamys bracteata (Velloziaceae) is a resurrection plant with cold tolerance. Herein, a chromosome-level reference genome of A. bracteata based on Nanopore, Illumina, and Hi-C data is reported. The high-quality assembled genome was 197.97 Mb, with a scaffold N50 value of 8.64 Mb and a contig N50 value of 6.96 Mb. We annotated 23,509 protein-coding genes. Eight contracted gene families and three expanded gene families were detected. Repeat sequences accounted for approximately 28.63% of the genome. The LEA1 and Dehydrin gene families, which are involved in desiccation resistance, expanded in A. bracteata. We identified genes involved in chilling tolerance, COLD1.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Craterostigma Idioma: En Revista: Genome Biol Evol Assunto da revista: BIOLOGIA / BIOLOGIA MOLECULAR Ano de publicação: 2021 Tipo de documento: Article País de afiliação: China País de publicação: ENGLAND / ESCOCIA / GB / GREAT BRITAIN / INGLATERRA / REINO UNIDO / SCOTLAND / UK / UNITED KINGDOM

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Craterostigma Idioma: En Revista: Genome Biol Evol Assunto da revista: BIOLOGIA / BIOLOGIA MOLECULAR Ano de publicação: 2021 Tipo de documento: Article País de afiliação: China País de publicação: ENGLAND / ESCOCIA / GB / GREAT BRITAIN / INGLATERRA / REINO UNIDO / SCOTLAND / UK / UNITED KINGDOM