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Reducing overconfident errors in molecular property classification using Posterior Network.
Fan, Zhehuan; Yu, Jie; Zhang, Xiang; Chen, Yijie; Sun, Shihui; Zhang, Yuanyuan; Chen, Mingan; Xiao, Fu; Wu, Wenyong; Li, Xutong; Zheng, Mingyue; Luo, Xiaomin; Wang, Dingyan.
Afiliação
  • Fan Z; Drug Discovery and Design Center, State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zuchongzhi Road, Shanghai 201203, China.
  • Yu J; University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, China.
  • Zhang X; Drug Discovery and Design Center, State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zuchongzhi Road, Shanghai 201203, China.
  • Chen Y; University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, China.
  • Sun S; School of Chinese Materia Medica, Nanjing University of Chinese Medicine, Nanjing 210023, China.
  • Zhang Y; School of Chinese Materia Medica, Nanjing University of Chinese Medicine, Nanjing 210023, China.
  • Chen M; School of Chinese Materia Medica, Nanjing University of Chinese Medicine, Nanjing 210023, China.
  • Xiao F; Drug Discovery and Design Center, State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zuchongzhi Road, Shanghai 201203, China.
  • Wu W; University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, China.
  • Li X; Drug Discovery and Design Center, State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zuchongzhi Road, Shanghai 201203, China.
  • Zheng M; School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China.
  • Luo X; Lingang Laboratory, Shanghai 200031, China.
  • Wang D; School of Chinese Materia Medica, Nanjing University of Chinese Medicine, Nanjing 210023, China.
Patterns (N Y) ; 5(6): 100991, 2024 Jun 14.
Article em En | MEDLINE | ID: mdl-39005492
ABSTRACT
Deep-learning-based classification models are increasingly used for predicting molecular properties in drug development. However, traditional classification models using the Softmax function often give overconfident mispredictions for out-of-distribution samples, highlighting a critical lack of accurate uncertainty estimation. Such limitations can result in substantial costs and should be avoided during drug development. Inspired by advances in evidential deep learning and Posterior Network, we replaced the Softmax function with a normalizing flow to enhance the uncertainty estimation ability of the model in molecular property classification. The proposed strategy was evaluated across diverse scenarios, including simulated experiments based on a synthetic dataset, ADMET predictions, and ligand-based virtual screening. The results demonstrate that compared with the vanilla model, the proposed strategy effectively alleviates the problem of giving overconfident but incorrect predictions. Our findings support the promising application of evidential deep learning in drug development and offer a valuable framework for further research.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Idioma: En Revista: Patterns (N Y) Ano de publicação: 2024 Tipo de documento: Article País de afiliação: China País de publicação: Estados Unidos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Idioma: En Revista: Patterns (N Y) Ano de publicação: 2024 Tipo de documento: Article País de afiliação: China País de publicação: Estados Unidos