High prevalence of human papillomavirus (HPV) in oral mucosal lesions of patients at the Ambulatory of Oral Diagnosis of the Federal University of Sergipe, Northeastern Brazil

Abstract The role of human papillomavirus (HPV) in oral carcinogenesis is still controversial as detection rates of the virus in oral cavity reported in the literature varies greatly. Objective The aim of this study was to evaluate the frequency of HPV infection and its genotypes in patients with oral lesions at the Ambulatory of Oral Diagnosis of the Federal University of Sergipe, Brazil. Material and Methods We conducted a molecular study with 21 patients (15 females) aged from two to 83 years with clinically detectable oral lesions. Samples were collected through exfoliation of lesions and HPV-DNA was identified using MY09/11 and GP5+/6+ primers. Genotyping was performed by multiplex PCR. Results Benign, premalignant and malignant lesions were diagnosed by histopathology. HPV was detected in 17 samples. Of these, HPV-6 was detected in 10 samples, HPV-18 in four and HPV-16 in one sample. When samples were categorized by lesion types, HPV was detected in two papilloma cases (2/3), five carcinomas (5/6), one hyperplasia (1/1) and nine dysplasia cases (9/11). Conclusion Unlike other studies in the literature, we reported high occurrence of HPV in oral lesions. Further studies are required to enhance the comprehension of natural history of oral lesions.

Evaluation of a PCR multiplex for detection and differentiation of Mycoplasma synoviae, M. gallisepticum, and M. gallisepticum strain F-vaccine / Avaliação de uma PCR multiplex para detecção e diferenciação de Mycoplasma synoviae, Mycoplasma gallisepticum e Mycoplasma gallisepticum cepa F vacinal

Mycoplasma gallisepticum (MG) and Mycoplasma synoviae (MS) are the mycoplasma infections of most concern for commercial poultry industry. MG infection is commonly designated as chronic respiratory disease (CRD) of chickens and infections sinusitis of turkeys. MS causes sub clinical upper respiratory infection and tenosynovitis or bursitis in chickens and turkeys. The multiplex PCR was standardized to detect simultaneously the MS, MG field strains and MG F-vaccine strain specific. The generic PCR for detection of any species of Mollicutes Class was performed and compared to the multiplex PCR and to PCR using species-specific primers. A total of 129 avian tracheal swabs were collected from broiler-breeders, layer hens and broilers in seven different farms and were examined by multiplex PCR methods. The system (multiplex PCR) demonstrated to be very rapid, sensitive, and specific. Therefore, the results showed a high prevalence of MS in the flocks examined (27.9%), and indicate that the MS is a recurrent pathogen in Brazilian commercial poultry flocks...

Mycoplasma gallisepticum (MG) and Mycoplasma synoviae (MS) são micoplasmas que causam infecção de maior preocupação para a indústria avícola. MG é a bactéria responsável pela infecção, comumente designada, como doença crônica respiratória (DCR) de galinhas e sinusite infecciosa de perus. MS é responsável por infecções subclínicas do trato respiratório superior e tenosinovite ou bursite em galinha e perus. A reação da PCR multiplex foi padronizada para detectar simultaneamente MS, MG cepa de campo e MG-F cepa vacinal. A PCR genérica para detecção de qualquer espécie de Mycoplasma foi realizada e comparada a PCR multiplex e a PCR com primers específicos. O total de 129 amostras de suabes de traqueia foi coletado de reprodutoras pesadas, poedeiras e frangos em sete diferentes empresas avícolas e então foram examinados por PCR multiplex. O sistema da PCR multiplex demonstrou ser muito rápido, sensível e específico. Então, os resultados mostraram uma alta prevalência de MS nos lotes examinados ( 27,9%), e indica que MS é um patógeno recorrente nos lotes de aves comerciais brasileiro...

Investigação citogenômica tecidual post-mortem em portadores de malformações congênitas / Post-mortem tissue cytogenomics investigation in patients with congenital malformations

Introdução: As malformações congênitas (MCs) são a segunda causa de mortes fetais e infantis no Brasil e, em grande parte dos casos, a sua etiologia não é bem definida. Devido às consequências clínicas das MCs, alguns pacientes falecem sem tempo hábil para uma investigação etiológica acurada. Dessa forma, a maioria dos casos permanece sem uma confirmação molecular das suspeitas clínicas, dificultando o aconselhamento genético para as famílias. Objetivos: O presente trabalho utilizou técnicas citogenômicas para caracterizar molecularmente a presença de anormalidades no DNA, desde aneuploidias até a variação do número de cópias gênicas (CNVs) em diferentes tecidos de pacientes falecidos portadores de MC encaminhados ao Serviço de Verificação de Óbitos para avaliação anatomopatológica. Casuística e Métodos: Foram avaliadas amostras de 30 pacientes portadores de MC submetidos à necropsia. O DNA foi extraido de diferentes tecidos (cérebro, coração, fígado, pele e diafragma) previamente conservados em RNA later, formol ou emblocados em parafina. Foram utilizadas as técnicas de Multiplex Ligation-dependent Probe Amplification (MLPA) com os kits P095, P064 e P070 (MRC-Holland®), Marcadores Microssatélites (MMS) com o kit MiniFiler (Life Technologies®), a Fluorescence in Situ Hybridization (FISH), a técnica de array (Infinium® CytoSNP-850K BeadChip - Illumina) e o Sequenciamento Bidirecional por Sanger. A interpretação dos resultados foi realizada utilizando os softwares GeneMarker, Coffalyser, BlueFuse Multi, Sequencher e com os bancos de dados Database of Genomic Variants (DGV - http://projects.tcag.ca/variation/), Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources (DECIPHER - http://decipher.sanger.ac.uk/), UCSC Genome Bioinformatics (http://genome.ucsc.edu) e Mutation Taster. Resultados: Dos 30 pacientes avaliados, 13 apresentaram alterações patogênicas. Entre eles, oito apresentaram aneuploidias envolvendo...

Introduction: Congenital malformations (CMs) are the second leading cause of fetal and infant deaths in Brazil and in most cases the etiology is not well defined. Also, the patients remain without a conclusive diagnostic making difficult the genetic counseling. Objectives: This study applied cytogenomics techniques in order to characterize the presence of DNA abnormalities, as well as, aneuploidies and genomic copy number variations (CNVs) in different tissues from deceased patients with CM from "Serviço de Verificação de Óbitos". Patients and Methods: We evaluated samples from 30 patients undergoing necropsy. The DNA was extracted from different tissues (brain, heart, liver, skin and diaphragm) stored in RNA later, formaldehyde and embedded in paraffin. We performed Multiplex Ligation-dependent Probe Amplification (MLPA) with P095 kits, P064 and P070 (MRC-Holland®), microsatellite markers (MMS) with MiniFiler kit (Life Technologies), Fluorescence In Situ Hybridization (FISH), array technique (Infinium® CytoSNP-850K BeadChip - Illumina) and bidirectional sequencing by Sanger. The results was analyzed using different softwares: GeneMarker, Coffalyser, BlueFuse Multi Sequencher and databases Database of Genomic Variants (DGV - http://projects.tcag.ca/variation/) Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources (Decipher - http://decipher.sanger.ac.uk/), UCSC Genome Bioinformatics (http://genome.ucsc.edu) and Mutation Taster. Results: The results showed 13 patients with pathogenic CNVs, and among them, eight presented aneuploidies involving chromosomes 13, 18, 21, X and Y. Two of them presented intra-tissue mosaicism. Also four patients showed several different microdeletions or microduplications: duplication of TYMS gene (18p11.32); deletion of CHL1 gene (3p26.3); deletion of HIC1 gene (17p13.3); deletion of TOM1L2 gene (17p11.2 ). One patient showed a pathogenic missense mutation of g.8535C>G (c.746C > G) in exon 7 from FGFR3...

Hepatitis B virus subgenotype C2- and B2-associated mutation patterns may be responsible for liver cirrhosis and hepatocellular carcinoma, respectively

The objective of this study was to examine hepatitis B virus (HBV) subgenotypes and mutations in enhancer II, basal core promoter, and precore regions of HBV in relation to risks of liver cirrhosis (LC) and hepatocellular carcinoma (HCC) in Southeast China. A case-control study was performed, including chronic hepatitis B (CHB; n=125), LC (n=120), and HCC (n=136). HBV was genotyped by multiplex polymerase chain reaction and subgenotyped by restriction fragment length polymorphism. HBV mutations were measured by DNA sequencing. HBV genotype C (68.2%) predominated and genotype B (30.2%) was the second most common. Of these, C2 (67.5%) was the most prevalent subgenotype, and B2 (30.2%) ranked second. Thirteen mutations with a frequency >5% were detected. Seven mutation patterns (C1653T, G1719T, G1730C, T1753C, A1762T, G1764A, and G1799C) were associated with C2, and four patterns (C1810T, A1846T, G1862T, and G1896A) were associated with B2. Six patterns (C1653T, G1730C, T1753C, A1762T, G1764A, and G1799C) were obviously associated with LC, and 10 patterns (C1653T, G1730C, T1753C, A1762T, G1764A, G1799C, C1810T, A1846T, G1862T, and G1896A) were significantly associated with HCC compared with CHB. Four patterns (C1810T, A1846T, G1862T, and G1896A) were significantly associated with HCC compared with LC. Multivariate regression analyses showed that HBV subgenotype C2 and C2-associated mutation patterns (C1653T, T1753C, A1762T, and G1764A) were independent risk factors for LC when CHB was the control, and that B2-associated mutation patterns (C1810T, A1846T, G1862T, and G1896A) were independent risk factors for HCC when LC was the control.