Detalhe da pesquisa
1.
Understanding the Target Search by Multiple Transcription Factors on Nucleosomal DNA.
Chemphyschem
; 24(8): e202200644, 2023 04 17.
Artigo
em Inglês
| MEDLINE | ID: mdl-36602094
2.
Nucleosome breathing facilitates cooperative binding of pluripotency factors Sox2 and Oct4 to DNA.
Biophys J
; 121(23): 4526-4542, 2022 12 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-36321206
3.
Kinetic origin of nucleosome invasion by pioneer transcription factors.
Biophys J
; 120(23): 5219-5230, 2021 12 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-34757077
4.
Molecular dynamics simulations and biochemical characterization of Pf14-3-3 and PfCDPK1 interaction towards its role in growth of human malaria parasite.
Biochem J
; 477(12): 2153-2177, 2020 06 26.
Artigo
em Inglês
| MEDLINE | ID: mdl-32484216
5.
Structural Basis of Enhanced Facilitated Diffusion of DNA-Binding Protein in Crowded Cellular Milieu.
Biophys J
; 118(2): 505-517, 2020 01 21.
Artigo
em Inglês
| MEDLINE | ID: mdl-31862109
6.
Mechanism of Dynamic Binding of Replication Protein A to ssDNA.
J Chem Inf Model
; 60(10): 5057-5069, 2020 10 26.
Artigo
em Inglês
| MEDLINE | ID: mdl-32990435
7.
Disparity in anomalous diffusion of proteins searching for their target DNA sites in a crowded medium is controlled by the size, shape and mobility of macromolecular crowders.
Soft Matter
; 15(9): 1960-1969, 2019 Feb 27.
Artigo
em Inglês
| MEDLINE | ID: mdl-30539954
8.
Searching target sites on DNA by proteins: Role of DNA dynamics under confinement.
Nucleic Acids Res
; 43(19): 9176-86, 2015 Oct 30.
Artigo
em Inglês
| MEDLINE | ID: mdl-26400158
9.
Search by proteins for their DNA target site: 1. The effect of DNA conformation on protein sliding.
Nucleic Acids Res
; 42(20): 12404-14, 2014 Nov 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-25324308
10.
Search by proteins for their DNA target site: 2. The effect of DNA conformation on the dynamics of multidomain proteins.
Nucleic Acids Res
; 42(20): 12415-24, 2014 Nov 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-25324311
11.
Thermodynamic Protein Destabilization by GFP Tagging: A Case of Interdomain Allostery.
Biophys J
; 109(6): 1157-62, 2015 Sep 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-25998254
12.
Exploring Protein-Peptide Binding Specificity through Computational Peptide Screening.
PLoS Comput Biol
; 9(10): e1003277, 2013 Oct.
Artigo
em Inglês
| MEDLINE | ID: mdl-24204228
13.
Hybrid Monte Carlo with non-uniform step size.
J Chem Phys
; 140(4): 044105, 2014 Jan 28.
Artigo
em Inglês
| MEDLINE | ID: mdl-25669503
14.
The role of nucleotide opening dynamics in facilitated target search by DNA-repair proteins.
Biochim Biophys Acta Gene Regul Mech
; 1867(2): 195026, 2024 Jun.
Artigo
em Inglês
| MEDLINE | ID: mdl-38641240
15.
Interdomain dynamics in human Replication Protein A regulates kinetics and thermodynamics of its binding to ssDNA.
PLoS One
; 18(1): e0278396, 2023.
Artigo
em Inglês
| MEDLINE | ID: mdl-36656834
16.
How Do Nucleosome Dynamics Regulate Protein Search on DNA?
J Phys Chem B
; 127(25): 5702-5717, 2023 06 29.
Artigo
em Inglês
| MEDLINE | ID: mdl-37310883
17.
Unusual weak and delayed GTPase activity of FtsZ from human pathogenic bacteria Helicobacter pylori.
J Biochem
; 2023 Dec 23.
Artigo
em Inglês
| MEDLINE | ID: mdl-38140941
18.
Coupled folding-binding in a hydrophobic/polar protein model: impact of synergistic folding and disordered flanks.
Biophys J
; 102(3): 569-78, 2012 Feb 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-22325280
19.
Understanding protein diffusion on force-induced stretched DNA conformation.
Front Mol Biosci
; 9: 953689, 2022.
Artigo
em Inglês
| MEDLINE | ID: mdl-36545509
20.
Superstructure Detection in Nucleosome Distribution Shows Common Pattern within a Chromosome and within the Genome.
Life (Basel)
; 12(4)2022 Apr 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-35455033