Seascape genomics of the pink abalone (Haliotis corrugata): An insight into a cross-border species in the northeast Pacific coast.

Seascape genomics gives insight into the geographic and environmental factors shaping local adaptations. It improves the understanding of the potential effects of climate change, which is relevant to provide the basis for the international management of fishery resources. The pink abalone (Haliotis corrugata) is distributed from California, United States to Baja California Sur, Mexico, exposed to a latitudinal environmental gradient in the California Current System. Management of the pink abalone contrasts between Mexico and the United States; Mexico has an active fishery organized in four administrative areas, while the United States has kept the fishery in permanent closure since 1996. However, the impact of environmental factors on genetic variation along the species distribution remains unknown, and understanding this relationship is crucial for effective spatial management strategies. This study aims to investigate the neutral and adaptive genomic structure of H. corrugata. A total of 203 samples from 13 locations were processed using ddRADseq, and covering the species' distribution. Overall, 2,231 neutral, nine potentially adaptive and three genomic-environmental association loci were detected. The neutral structure identified two groups: 1) California, United States and 2) Baja California Peninsula, México. In addition, the adaptive structure analysis also detected two groups with genetic divergence observed at Punta Eugenia. Notably, the seawater temperature significantly correlated with the northern group (temperate) and the southern (warmer) group. This study is a valuable foundation for future research and conservation initiatives, emphasizing the importance of considering neutral and adaptive genetic factors when developing management strategies for marine species.

Litopenaeus vannamei oxygen consumption and HSP gene expression at cyclic conditions of hyperthermia and hypoxia.

Although Litopenaeus vannamei is a widely studied species, the information on how the organisms respond to natural daily variations of environmental conditions such as temperature and dissolved oxygen, and how such conditions alter the physiological responses, is scarce. In the present work, the strategies used by shrimps to cope with temperature and dissolved oxygen fluctuations during 24 days were investigated through the evaluation of oxygen consumption and heat shock proteins (HSP) gene expression. During daily fluctuations, no change in oxygen consumption in the short-term, but a significant increase in the long-term during hyperthermia conditions was registered, whereas a significant decrease during hypoxia was observed during all the bioassay. On the other hand, HSP70 and HSP90 gene expression increased in gills under thermal stress but was down-regulated under hypoxia, in both the short- and the long-term. This study highlights that to counteract environmental variations of temperature and dissolved oxygen, the shrimps use molecular compensatory mechanisms (HSP gene expression) that are different to those used under constant hypoxic conditions, suggesting that hypoxia can compromise physiological cytoprotection.

Role of oceanography in shaping the genetic structure in the North Pacific hake Merluccius productus.

Determining the relative influence of biotic and abiotic factors on genetic connectivity among populations remains a major challenge in evolutionary biology and in the management and conservation of species. North Pacific hake (Merluccius productus) inhabits upwelling regions in the California Current ecosystem from the Gulf of California to the Gulf of Alaska. In this study, we examined mitochondrial DNA (mtDNA) and microsatellite variation to estimate levels of genetic differentiation of M. productus in relation to the role of oceanographic features as potential barriers to gene flow. Samples were obtained from nine sites spanning a large part of the geographic range of the species, from Puget Sound, Washington to Costa Rica. The microsatellite results revealed three genetically discrete populations: one spanning the eastern Pacific coast, and two apparently resident populations circumscribed to the Puget Sound and the northern Gulf of California (FST = 0.032, p = 0.036). Cytochrome b sequence data indicated that isolation between the Puget Sound and northern Gulf of California populations from the coastal Pacific were recent phenomena (18.5 kyr for Puget Sound and 40 kyr for the northern Gulf of California). Oceanographic data obtained from the Gulf of California support the hypothesis that permanent fronts within the region, and strong gradients at the entrance to the Gulf of California act as barriers to gene flow. A seascape genetics approach found significant genetic-environment associations, where the daytime sea surface temperature and chlorophyll concentrations were the best predictive variables for the observed genetic differentiation. Considering the potential causes of genetic isolation among the three populations, e.g. spawning areas in different latitudes associated with upwelling processes, oceanographic barriers, asymmetric migration and specialized diet, oceanographic barriers appear to be a likely mechanism restricting gene flow.

Genetic connectivity of the metapopulation of the coral Pocillopora verrucosa (Scleractinia: Pocilloporidae) in multi-use marine protected areas of the Gulf of California, and management implications / Conectividad genética de la metapoblación del coral Pocillopora verrucosa (Scleractinia: Pocilloporidae) en áreas protegidas multipropósito del Golfo de California, e implicaciones de manejo

Abstract Introduction: Estimates of contemporary connectivity of the broadcast spawning coral Pocillopora verrucosa between multi-use marine protected areas (MUMPAs) are required to assess MUMPA effectiveness and their ability to enhance resilience against disturbances. Objective: To determine the genetic structure and connectivity patterns between P. verrucosa demes inside the Gulf of California and evaluate the role and effectiveness of established MUMPAS in their protection and resilience. Methods: We assessed P. verrucosa connectivity along its peninsular range (∼350 km), including five locations and three MUMPAs in the Gulf of California using six microsatellite genetic markers. Results: Population structure was significant (F ST = 0.108***) when demes included clonal replicates; however, when these clones were removed from the analysis, the sexual individuals comprised a metapopulation panmixia (F ST = 0.0007 NS). To further understand connectivity patterns, an assignment test was carried out which identified ten recent between-deme migrants with a mean dispersal distance of 116.6 km (± 80.5 SE). No long-distance dispersal was detected. These results highlight the ecological importance of the Bahía de La Paz region, including Archipiélago de Espíritu Santo MUMPA. This region, located at the center of the species peninsular range, exports larva to downstream sink demes such as the Loreto (northwardly) and Cabo Pulmo (southwardly) MUMPAs. Of importance, inter-MUMPA spacing was larger than the mean larval dispersal by ~56 km, suggesting thar the designation of intermediate 'no-take' zones would enhance short-distance connectivity. Conclusion: This study contributes as a baseline for policymakers and authorities to provide robust strategies for coral ecosystem protection and suggest that protection efforts must be increased towards peninsular intermediate reefs to promote metapopulation resilience from natural and anthropogenic factors.

Resumen Introducción: La estimación de la conectividad en corales escleractinios, como P. verrucosa, dentro de una red de áreas marinas protegidas (MPA) preestablecidas es fundamental para garantizar la efectividad en su conservación e incrementar su resiliencia. Objetivo: Determinar la estructura genética y la conectividad entre los demes de P. verrucosa dentro del Golfo de California, y evaluar el papel y efectividad de la red preestablecida de áreas marinas protegidas. Métodos: Se evaluó la conectividad de P. verrucosa en cinco locaciones a lo largo del golfo incluyendo tres MPA usando seis marcadores microsatélites. Resultados: Se demostró que existe estructura poblacional adjudicada a la presencia local y heterogénea de individuos clones (F ST = 0.108***); pero al removerlos del análisis, los individuos de origen sexual conformaron una metapoblación en panmixia (F ST = 0.0007 NS). Así mismo, se identificaron 10 potenciales migrantes en la región con una dispersión promedio de 116.57 km (± 80.47 SE) y sin conexión entre localidades extremas. De relevancia, se identificó la importancia ecológica del área central o Bahía de La Paz y MPA Archipiélago Espíritu Santo, como fuente larvaria de corales a toda la región. Además, se determinó que el espacio inter-MPA fue mayor que la distancia de dispersión promedio larvaria mencionada, por lo que sería de importancia ecológica el establecimiento de MPAs intermedias que favorezcan la conectividad a distancias cortas. Conclusiones: Los resultados encontrados en el estudio son pertinentes y contribuyen como línea base para los tomadores de decisiones y autoridades, proporcionando la conectividad de la región para establecer las estrategias de protección apropiadas, sugiriendo aumentar la conservación de las subpoblaciones centrales, la cuales promueven la resiliencia metapoblacional de P. verrucosa ante factores ambientales y/o antropogénicos.

Pollen morphology of four species of Jatropha (Euphorbiaceae), including toxic varieties, in Northwestern Mexico / Morfología del polen de cuatro especies de Jatropha (Euphorbiaceae), incluyendo variedades tóxicas, en el noroeste de México

AbstractJatropha curcas is a native Mexican plant, distributed in the forests of coastal regions; it has shown potential for the production of biofuel, and its raw protein can be used as animal feed. Nevertheless, its current varieties have low yield and production variability, as it is in domestication period. The knowledge of the pollen grains is fundamental for studies of Jatropha reproductive biology and breeding for genetic improvement to generate new hybrids and improve fruit and seed yield. This study compared pollen morphology of four Jatropha species, which include two varieties of J. curcas (one toxic from India and one non-toxic from Mexico), and two varieties of wild J. cinerea (Sinaloa and Baja California Sur); additionally, pollen was collected from wild J. platyphylla (Sinaloa) and J. vernicosa (Baja California Sur) to characterize them palynologically. We used a scanning electron microscope to describe the size and shape of pollen grains. Pollen grains were observed spheroidal. The diameter of the varieties of toxic and non-toxic J. curcas and that of J. platyphylla were 58 ± 2.3, 54 ± 1.7, and 51 ± 2.4 µm, respectively; the number of clavae was 84 ± 10, 108 ± 15, and 180 ± 15.5, respectively. Pollen grains of J.cinerea (Sinaloa) had a diameter of 50 ± 1.7 µm and 220 ± 14 clavae by area; J. cinerea (Baja California Sur) had a diameter of 45 ± 1.9 µm and 195 ± 14.7 clavae. Pollen grains of J. vernicosa had a diameter of 46 ± 2.1 µm and 231 ± 25.6 clavae. The ornamentation of the exine showed clava with capita gemma shaped for varieties of J.curcas species and clavum shaped for J. platyphylla, J. cinerea and J. vernicosa species. The studied varieties have a cross-linked endexine and ectexine intectate. Luminal bacules were observed in the reticular space of J. curcas varieties while none were present in the varieties of J. cinerea, J. platyphylla, and J. vernicosa.

ResumenJatropha curcas es nativa de México, y se distribuye en los bosques de las regiones costeras; las plantas han mostrado potencial para la producción de biodiesel, y la proteína cruda puede utilizarse para alimentación animal. Sin embargo, sus variedades actuales tienen bajo rendimiento y variabilidad en la producción, por estar en periodo de domesticación. El conocimiento de los granos de polen es fundamental para el estudio de la biología reproductiva de Jatropha y mejoramiento genético para generar nuevos híbridos y mejorar el rendimiento de frutos y semillas. Este estudio compara la morfología del polen de cuatro especies de Jatropha, que incluyen dos variedades de J. curcas, (una tóxica de India y una no tóxica de México) y dos variedades silvestres de J. cinerea (Sinaloa y Baja California Sur), por último, se obtuvo polen de J. platyphylla (Sinaloa) y J. vernicosa (Baja California Sur) silvestres para caracterizarlos palinológicamente. Para describir el tamaño y la forma de los granos de polen, se utilizó un microscopio electrónico de barrido. Los granos de polen tienen forma esferoidal. El diámetro de las variedades de J. curcas tóxica y no tóxica, y J. platyphylla fueron 58 ± 2.3, 54 ± 1.7, y 51 ± 2.4 micras, respectivamente; el número de clavas fue de 84 ± 10, 108 ± 15 y 180 ± 15.5, respectivamente. Los granos de polen de J. cinerea (Sinaloa) tienen un diámetro de 50 ± 1.7 micras y 220 ± 14 clavas por zona; J. cinerea (Baja California Sur) tiene un diámetro de 45 ± 1.9 micras y 195 ± 14.7 clavas. Los granos de polen de J. vernicosa tienen un diámetro de 46 ± 2.1 micras y 231 ± 25.6 clavas. La ornamentación de la exina mostró clavas con cápita en forma de gema y pequeños báculos en el lumen para ambas J. curcas y en forma de clavum para J. cinerea, J. platyphylla y J. vernicosa y no presentan báculos en el lumen. Las variedades estudiadas tienen una endexina reticulada y ectexina intectada.