Detalhe da pesquisa
1.
Cardinality optimization in constraint-based modelling: application to human metabolism.
Bioinformatics
; 39(9)2023 09 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-37697651
2.
MetaboAnnotator: an efficient toolbox to annotate metabolites in genome-scale metabolic reconstructions.
Bioinformatics
; 38(20): 4831-4832, 2022 10 14.
Artigo
em Inglês
| MEDLINE | ID: mdl-36047841
3.
DEMETER: efficient simultaneous curation of genome-scale reconstructions guided by experimental data and refined gene annotations.
Bioinformatics
; 37(21): 3974-3975, 2021 11 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-34473240
4.
Community-driven roadmap for integrated disease maps.
Brief Bioinform
; 20(2): 659-670, 2019 03 25.
Artigo
em Inglês
| MEDLINE | ID: mdl-29688273
5.
The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease.
Nucleic Acids Res
; 47(D1): D614-D624, 2019 01 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-30371894
6.
The Microbiome Modeling Toolbox: from microbial interactions to personalized microbial communities.
Bioinformatics
; 35(13): 2332-2334, 2019 07 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-30462168
7.
Structural conserved moiety splitting of a stoichiometric matrix.
J Theor Biol
; 499: 110276, 2020 08 21.
Artigo
em Inglês
| MEDLINE | ID: mdl-32333975
8.
Metabolic and signalling network maps integration: application to cross-talk studies and omics data analysis in cancer.
BMC Bioinformatics
; 20(Suppl 4): 140, 2019 Apr 18.
Artigo
em Inglês
| MEDLINE | ID: mdl-30999838
9.
DistributedFBA.jl: high-level, high-performance flux balance analysis in Julia.
Bioinformatics
; 33(9): 1421-1423, 2017 05 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-28453682
10.
CHRR: coordinate hit-and-run with rounding for uniform sampling of constraint-based models.
Bioinformatics
; 33(11): 1741-1743, 2017 Jun 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-28158334
11.
ReconMap: an interactive visualization of human metabolism.
Bioinformatics
; 33(4): 605-607, 2017 02 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-27993782
12.
A systems approach reveals distinct metabolic strategies among the NCI-60 cancer cell lines.
PLoS Comput Biol
; 13(8): e1005698, 2017 Aug.
Artigo
em Inglês
| MEDLINE | ID: mdl-28806730
13.
Identification of Conserved Moieties in Metabolic Networks by Graph Theoretical Analysis of Atom Transition Networks.
PLoS Comput Biol
; 12(11): e1004999, 2016 Nov.
Artigo
em Inglês
| MEDLINE | ID: mdl-27870845
14.
Conditions for duality between fluxes and concentrations in biochemical networks.
J Theor Biol
; 409: 1-10, 2016 11 21.
Artigo
em Inglês
| MEDLINE | ID: mdl-27345817
15.
fastGapFill: efficient gap filling in metabolic networks.
Bioinformatics
; 30(17): 2529-31, 2014 Sep 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-24812336
16.
Consistent estimation of Gibbs energy using component contributions.
PLoS Comput Biol
; 9(7): e1003098, 2013.
Artigo
em Inglês
| MEDLINE | ID: mdl-23874165
17.
Robust flux balance analysis of multiscale biochemical reaction networks.
BMC Bioinformatics
; 14: 240, 2013 Jul 30.
Artigo
em Inglês
| MEDLINE | ID: mdl-23899245
18.
Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine.
Nat Biotechnol
; 41(9): 1320-1331, 2023 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-36658342
19.
Omics data integration suggests a potential idiopathic Parkinson's disease signature.
Commun Biol
; 6(1): 1179, 2023 11 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-37985891
20.
APOLLO: A genome-scale metabolic reconstruction resource of 247,092 diverse human microbes spanning multiple continents, age groups, and body sites.
bioRxiv
; 2023 Oct 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-37873072