How are N-methylcarbamates encapsulated by ß-cyclodextrin: insight into the binding mechanism.

Guest molecules containing chromophore groups encapsulated by ß-cyclodextrin (ß-CD) generate circular dichroism (CD) signals, which enables a preliminary prediction of their binding modes. However, the accurate determination of the representative binding conformation (RC) remains a challenging task due to the complex conformational space of these host-guest systems. Here, we combine a molecular dynamics/quantum mechanics/continuum solvent model (MD/QM/CSM) with induced circular dichroism (ICD) data (N. L. Pacioni, A. B. Pierini and A. V. Veglia, Spectrochim. Acta A Mol. Biomol. Spectrosc., 2013, 103, 319-324.) to explore the binding mechanism of ß-CD with four N-methylcarbamate molecules: promecarb (PC), bendiocarb (BC), carbaryl (CY) and carbofuran (CF). In aqueous solution, their stability decreases as: PC > BC > CY > CF. Comparing the ECD spectra computed from TD-DFT with the ICD data can help eliminate many common binding configurations and identify the RC. The host-guest binding affinities (BAs) estimated using a ONIOM2(B971:PM6)/SMD model reproduce the measured binding trend, reveal the competition between the non-covalent interaction and solvent effect and explain the large difference in their binding modes. We also examine the fluctuations in the computed BA using similar structures.

Design and exploration of 5-nitro-3-trinitromethyl-1H-1,2,4-triazole and its derivatives as energetic materials.

According to the fact that 5-nitro-3-trinitromethyl-1H-1,2,4 triazole (NTNMT) is a successful, good explosive, energetic groups such as -CH3, -NH2, -NHNO2, -NO2, -ONO2, -NF2, -CN, -NC, -N3 groups were introduced into NTNMT and their oxygen balance was at about zero. The energetic properties, detonation performance, and sensitivity were studied at the B3LYP/6-31G** level of density functional theory to seek for possible high energy density compounds. The effects of substituent groups on heat of formation (HOF), density ρ, detonation velocity D, detonation pressure P, detonation energy Q, and sensitivity (evaluated using oxygen balance OB, the nitro group charges -QNO2, and bond dissociation energies BDE were studied and discussed. The order of contribution of the substituent groups to ρ, D, and P was -NF2 > -ONO2 > -NO2 > -NHNO2 > -N3 > -NH2 > -NC > -CN > -CH3; while to HOF is -N3 > -NC > -CN > -NO2 > -NF2 > -ONO2 > -NH2 > -NHNO2 > -CH3. The trigger bonds in the pyrolysis process for NTNMT derivatives may be N-NO2, N-NH2, N-NHNO2, C-NO2, or O-NO2 varying with the attachment of different substituents. Results show that NTNMT-NHNO2, -NH2, -CN, and -NC derivatives have high detonation performance and good stability. In a word, the oxygen balance at about zero strategy in this work offers new routes for the improvement in properties and stabilities of energetic materials. In the present paper, several 5-nitro-3-trinitromethyl-1H-1,2,4 triazole (NTNMT) derivatives were designed. Their energetic properties, detonation performance, and sensitivity were studied at the B3LYP/6-31G** level of density functional theory (DFT) to seek for possible high energy density compounds (HEDCs). The different substituents have some changes in the influence on heat of formation (HOF), density ρ, detonation velocity D, detonation pressure P, detonation energy Q, and sensitivity. In a word, the oxygen balance at about zero strategy in this work offers new routes for the improvement in properties and stabilities of energetic materials.

Design of Zero Oxygen Balance Energetic Materials on the Basis of Diels-Alder Chemistry.

Herein, a novel zero oxygen balance polycyclic energetic compound trans-3,3,4,4,7,7,8,8-octanitro-9,10-dioxatricyclo[4.2.1.12,5]-decane ( trans-BIT) was designed and expected to exhibit high crystal density (ρ = 2.06 g/cm3), outstanding detonation performance ( D = 9.473 km/s, P = 42.2 GPa), and promising thermostability and sensitivity. We proposed that the synthesis of this compound could be achieved via a facile Diels-Alder reaction, using tetranitroethylene and oxadiazole as starting materials. We also predicted that the crystal structure of trans-BIT would have P21/ C space group symmetry.

A simple, fast and convenient new method for predicting the stability of nitro compounds.

A new method has been proposed to understand and predict the stability of nitro compounds. This method uses the maximum electron densities at the critical points of two N-O bonds of nitro groups (ρ max), and it is more simple and faster than the existing methods and applicable to bigger systems. The correlations between the ρ max and total energy (E), bond lengths (R C-NO2, R N-NO2 and R )-NO2), bond dissociation energy (BDE), and impact sensitivity (h 50) reveal that the molecular stability, which can be reflected by E, R, BDE and h 50, generally decreases with the increasing ρ max. The compound with the larger ρ max is less stable. For the nitrating reaction, the smaller ρ max of the product generally implies the easier and faster reaction and the higher occurrence ratio of the product. Therefore, ρ max can be applied to predict the stability of nitro compounds and the easiness of the nitrating reaction.

Screening nitrogen-rich bases and oxygen-rich acids by theoretical calculations for forming highly stable salts.

Nitrogen-rich heterocyclic bases and oxygen-rich acids react to produce energetic salts with potential application in the field of composite explosives and propellants. In this study, 12 salts formed by the reaction of the bases 4-amino-1,2,4-trizole (A), 1-amino-1,2,4-trizole (B), and 5-aminotetrazole (C), upon reaction with the acids HNO3 (I), HN(NO2 )2 (II), HClO4 (III), and HC(NO2 )3 (IV), are studied using DFT calculations at the B97-D/6-311++G** level of theory. For the reactions with the same base, those of HClO4 are the most exothermic and spontaneous, and the most negative Δr Gm in the formation reaction also corresponds to the highest decomposition temperature of the resulting salt. The ability of anions and cations to form hydrogen bonds decreases in the order NO3 (-) >N(NO2 )2 (-) >ClO4 (-) >C(NO2 )3 (-) , and C(+) >B(+) >A(+) . In particular, those different cation abilities are mainly due to their different conformations and charge distributions. For the salts with the same anion, the larger total hydrogen-bond energy (EH,tot ) leads to a higher melting point. The order of cations and anions on charge transfer (q), second-order perturbation energy (E2 ), and binding energy (Eb ) are the same to that of EH,tot , so larger q leads to larger E2 , Eb , and EH,tot . All salts have similar frontier orbitals distributions, and their HOMO and LUMO are derived from the anion and the cation, respectively. The molecular orbital shapes are kept as the ions form a salt. To produce energetic salts, 5-aminotetrazole and HClO4 are the preferred base and acid, respectively.

Prediction of crystal morphology of cyclotrimethylene trinitramine in the solvent medium by computer simulation: a case of cyclohexanone solvent.

The crystal morphology of the energetic material cyclotrimethylene trinitramine (also known as RDX) influenced by the solvent effect was investigated via molecular dynamics simulation. The modified attachment energy (MAE) model was established by incorporating the growth parameter-solvent term. The adsorption interface models were used to study the adsorption interactions between solvent and RDX surfaces. The RDX crystal morphology grown from the cyclohexanone (CYC) solvent as a case investigation was calculated by the MAE model. The calculation results indicated that, due to the effect of CYC solvent, (210) and (111) faces had the greatest morphological importance on the final RDX crystal, while the morphological importance of (020), (002), and (200) faces were reduced. The predicted RDX morphology was in reasonable agreement with the observed experiment result.

Exploring the thermal decomposition and detonation mechanisms of 2,4-dinitroanisole by TG-FTIR-MS and molecular simulations.

2,4-dinitroanisole (DNAN), an insensitive explosive, has replaced trinitrotoluene (TNT) in many melt-cast explosives to improve the safety of ammunition and becomes a promising material to desensitize novel explosives of high sensitivity. Here, we combine thermogravimetric-Fourier transform infrared spectrometry-Mass spectrometry (TG-FTIR-MS), density functional theory (DFT), and ReaxFF molecular dynamics (MD) to investigate its thermal decomposition and detonation mechanisms. As revealed by TG-FTIR-MS, the thermal decomposition of DNAN starts at ca. 453 K when highly active NO2 is produced and quickly converted to NO resulting in the formation of a large amount of Ph(OH)(OH2)OCH3+. DFT calculations show that the activation energy of DNAN is higher than that of TNT due to the lack of α-H. Further steps in both thermal decomposition and detonation reactions of the DNAN are dominated by bimolecular O-transfers. ReaxFF MD indicates that DNAN has a lower heat of explosion than TNT, in accordance with the observation that the activation energies of polynitroaromatic explosives are inversely proportional to their heat of explosion. The inactive -OCH3 group and less nitro groups also render DNAN higher thermal stability than TNT.

Antibacterial and antibiofilm mechanisms of carbon dots: a review.

Due to the increasing bacterial resistance to conventional antibiotics, developing safe and effective approaches to combat infections caused by bacteria and biofilms has become an urgent clinical problem. Recently, carbon dots (CDs) have received great attention as a promising alternative to conventional antimicrobial agents due to their excellent antimicrobial efficacy and biocompatibility. Although CDs have been widely used in the field of antibacterial applications, their antibacterial and antibiofilm mechanisms have not been systematically discussed. This review provides a systematic overview on the complicated mechanisms of antibacterial and antibiofilm CDs based on recent development.

Theoretical investigations on structure, density, detonation properties, and sensitivity of the derivatives of PYX.

The -NH(2), -NO(2), -N(3), -NHNO(2), and -ONO(2) substitution derivatives of PYX (2,6-bis(picrylamino)-3,5-dinitropyridine) were studied at the B3LYP/6-31G** level of density functional theory. The sublimation enthalpies and heats of formation (HOFs) in gas phase and solid state of these compounds were calculated. The theoretical predicted density (ρ), detonation pressure (P), and detonation velocity (D) showed that these derivatives have better detonation performance than PYX. The effects of substituent groups on HOF, ρ, P, and D were discussed. The order of contribution of various groups to P and D was -ONO(2) > -NO(2) > -NHNO(2) > -N(3) > -NH(2). Sensitivity was evaluated using the frontier orbital energies, bond orders, bond dissociation enthalpies (BDEs), and characteristic heights (h(50)). The trigger bonds in the pyrolysis process for these PYX derivatives may be Ring-NO(2), NH-NO(2), or O-NO(2) varying with the substituents. The h(50) of most compounds are larger than that of CL-20, and those of -NH(2), -NO(2), and most -ONO(2) derivatives are larger than that of RDX. The BDEs of the trigger bonds of all but the -ONO(2) derivatives are sufficiently large. Taking both detonation performance and sensitivity into consideration, some derivatives of PYX may be good candidates of explosives.

Density functional theory study of high-pressure effect on crystalline 4,4',6,6'-tetra(azido)hydrazo-1,3,5-triazine.

Periodic density functional theory calculations are performed to study the hydrostatic compression effects on the structure, electronic, and thermodynamic properties of the energetic polyazide 4,4',6,6'-tetra(azido)hydrazo-1,3,5-triazine (TAHT) in the range of 0-100 GPa. At the ambient pressure, the local density approximation/Ceperley-Alder exchange-correlation potential parameterized by Perdew and Zunger relaxed crystal structure compares well with the experimental results. The predicted heat of sublimation is 38.68 kcal/mol, and the evaluated condensed phase of formation (414.04 kcal/mol) approximates to the experimental value. The detonation velocity and detonation pressure for the solid TAHT are calculated to be 7.44 km/s and 23.71 GPa, respectively. When the pressure is exerted less than 35 GPa, the crystal structure and geometric parameters change slightly. However, at 36 GPa, the molecular structure, band structure, and density of states change abnormally because of the azide-tetrazole transformation that has not been observed in gas phase or polar solvents. The azido group cyclizes to form a five-membered tetrazole ring that is coplanar with the riazine ring and contributes to a larger conjunction system. As the pressure augments further to 80 GPa, the hydrogen transfer is found and a new covalent bond H2-N9 is formed. In the studied pressure range, the band gap decreases generally except for some breaks due to the molecular transformation and drops to nearly zero at 100 GPa, which means the electronic character of the crystal changes toward a metallic system. An analysis of the electronic structure shows that an applied pressure increases the impact sensitivity of TAHT.

Cytocompatible Amphipathic Carbon Quantum Dots as Potent Membrane-Active Antibacterial Agents with Low Drug Resistance and Effective Inhibition of Biofilm Formation.

It is very challenging to design nanomaterials with both excellent antibacterial activity and cytocompatibility when facing bacterial infection. Here, inspired by antimicrobial peptides (AMPs), we fabricate carbon quantum dots (CQDs) derived from hydrophobic tryptophan and hydrophilic lysine or arginine (Lys/Trp-CQDs and Arg/Trp-CQDs), which possess amphipathic properties. These CQDs could effectively destroy bacterial membranes without developing resistance, inhibit biofilms formed by Staphylococcus aureus, and exhibit good in vitro biocompatibility. The antibacterial activities are caused by not only surface cationic structures and excess intracellular reactive oxygen species (ROS) generated by the CQDs but also the effects of the surface hydrophobic groups. These combined mechanisms of actions lead to bacterial membrane disruption, which raises the hope for combating bacterial infection without concern about drug resistance. What's more, the effect of amphiphilicity on balancing sterilization with biocompatibility expands the research ideas for developing available antibacterial nanomaterials.

Looking for high energy density compounds applicable for propellant among the derivatives of DPO with -N3, -ONO2, and -NNO2 groups.

The derivatives of DPO (2,5-dipicryl-1,3,4-oxadiazole) are optimized to obtain their molecular geometries and electronic structures at the DFT-B3LYP/6-31G* level. The bond length is focused to primarily predict thermal stability and the pyrolysis mechanism of the title compounds. Detonation properties are evaluated using the modified Kamlet-Jacobs equations based on the calculated densities and heats of formation. It is found that there are good linear relationships between density, detonation velocity, detonation pressure, and the number of azido, nitrate, and nitramine groups. According to the largest exothermic principle, the relative specific impulse is investigated by calculating the enthalpy of combustion (ΔH(comb)) and the total heat capacity (C(p,gases)). It is found that the introduction of -N(3), -ONO(2), and -NNO(2) groups could increase the specific impulses and II-4, II-5, and III-5 are potential candidates for High Energy Density Materials (HEDMs). The effect of the azido, nitrate, and nitramine groups on the structure and the properties is discussed.

Computational studies on the crystal structure, thermodynamic properties, detonation performance, and pyrolysis mechanism of 2,4,6,8-tetranitro-1,3,5,7-tetraazacubane as a novel high energy density material.

Studies have suggested that octanitrocubane (ONC) is one of the most powerful non-nuclear high energy density material (HEDM) currently known. 2,4,6,8-Tetranitro-1,3,5,7-tetraazacubane (TNTAC) studied in this work may also be a novel HEDM due to its high nitrogen content and crystal density. Density functional theory and molecular mechanics methods have been employed to study the crystal structure, IR spectrum, electronic structure, thermodynamic properties, gas-phase and condensed-phase heat of formation, detonation performance, and pyrolysis mechanism of TNTAC. The TNTAC has a predicted density of about 2.12 g/cm(3), and its detonation velocity (10.42 km/s) and detonation pressure (52.82 GPa) are higher than that of ONC. The crystalline packing is P2(1)2(1)2(1), and the corresponding cell parameters are Z = 4, a = 8.87 Å, b = 8.87 Å, and c = 11.47 Å. Both the density of states of the predicted crystal and the bond dissociation energy of the molecule in gas phase show that the cage C-N bond is the trigger bond during thermolysis. The activation energy of the pyrolysis initiation reaction obtained from the B3LYP/6-311++G(2df,2p) level is 125.98 kJ/mol, which indicates that TNTAC meets the thermal stability request as an exploitable HEDM.

Substituent effects on the properties related to detonation performance and sensitivity for 2,2',4,4',6,6'-hexanitroazobenzene derivatives.

To look for superior and safe high energy density compounds (HEDCs), 2,2',4,4',6,6'-hexanitroazobenzene (HNAB) and its -NO(2), -NH(2), -CN, -NC, -ONO(2), -N(3), or -NF(2) derivatives were studied at the B3LYP/6-31G* level of density functional theory (DFT). The isodesmic reactions were applied to calculate the heats of formation (HOFs) for these compounds. The theoretical molecular density (ρ), detonation energy (E(d)), detonation pressure (P), and detonation velocity (D), estimated using the Kamlet-Jacobs equations, showed that the detonation properties of these compounds were excellent. The effects of substituent groups on HOF, ρ, E(d), P, and D were studied. The order of contribution of the substituent groups to P and D was -NF(2) > -ONO(2) > -NO(2) > -N(3) > -NH(2). Sensitivity was evaluated using the nitro group charges, frontier orbital energies, and bond dissociation enthalpies (BDEs). The trigger bonds in the pyrolysis process for all these HNAB derivatives may be Ring-NO(2), Ring-N═N, Ring-NF(2), or O-NO(2) varying with the attachment of different substituents. BDEs of trigger bonds except those of -ONO(2) derivatives are relatively large, which means these compounds suffice the stability request of explosives. Taking both detonation properties and sensitivities into consideration, some -NF(2) and -NO(2) derivatives may be potential candidates for HEDCs.

Comparative theoretical studies of energetic azo s-triazines.

In this work, the properties of the synthesized high-nitrogen compounds 4,4',6,6'-tetra(azido)azo-1,3,5-triazine (TAAT) and 4,4',6,6'-tetra(azido)hydrazo-1,3,5-triazine (TAHT), and a set of designed bridged triazines with similar bridges were studied theoretically to facilitate further developments for the molecules of interests. The gas-phase heats of formation were predicted based on the isodesmic reactions by using the DFT-B3LYP/AUG-cc-PVDZ method. The estimates of the condensed-phase heats of formation and heats of sublimation were estimated in the framework of the Politzer approach. Calculation results show that the method gives a good estimation for enthalpies, in comparison with available experimental data for TAAT and TAHT. The crystal density has been computed using molecular packing calculations. The calculated detonation velocities and detonation pressures indicate that -NF(2), -NO(2), -N═N-, and -N═N(O)- groups are effective structural units for improving the detonation performance of the bridged triazines. The synthesized TAAT and TAHT are not preferred energetic materials due to their inferior detonation performance. The p→π conjugation effect between the triazine rings and bridges makes the molecule stable as a whole. The electrostatic behavior of the bridged triazines is characterized by an anomalous surface potential imbalance when incorporating the strongly electron-withdrawing -NF(2) and -NO(2) groups into the molecule. An analysis of the bond dissociation energies shows that all these derivatives have good thermal stability over RDX and HMX, and the -NH-NH- bridge is more helpful for improving the stability than -N═N(O)- and -N═N- bridges. Considering the detonation performance and thermal stability, three bridged triazines may be considered as the potential candidates of high-energy density materials (HEDMs).

Theoretical studies on the heats of formation, detonation properties, and pyrolysis mechanisms of energetic cyclic nitramines.

Density functional theory calculations were performed to find comprehensive relationships between the structures and performance of a series of highly energetic cyclic nitramines. The isodesmic reaction method was employed to estimate the heat of formation. The detonation properties were evaluated by using the Kamlet-Jacobs equations based on the theoretical densities and HOFs. Results indicate the N-NO(2) group and aza N atom are effective substituents for enhancing the detonation performance. All cyclic nitramines except C11 and C21 exhibit better detonation performance than HMX. The decomposition mechanism and thermal stability of these cyclic nitramines were analyzed via the bond dissociation energies. For most of these nitramines, the homolysis of N-NO(2) is the initial step in the thermolysis, and the species with the bridged N-N bond are more sensitive than others. Considering the detonation performance and thermal stability, twelve derivatives may be the promising candidates of high energy density materials (HEDMs). The results of this study may provide basic information for the further study of this kind of compounds and molecular design of novel HEDMs.

Theoretical prediction of properties of aliphatic polynitrates.

Aliphatic polynitrates are studied using the density functional theory B3LYP method with basis set 6-31G*. The assigned infrared spectrum is obtained and is used to compute the thermodynamic properties based on the frequencies scaled by 0.96 and the principle of statistic thermodynamics. On comparison of the theoretical densities with the experimental ones, the reliability of this theoretical method is tested. Detonation properties are evaluated using the modified Kamlet-Jacobs equations based on the calculated densities and heats of formation. According to the largest exothermic principle, the relative specific impulse (Is) is investigated by calculating the enthalpy of combustion (ΔH(comb)) and the total heat capacity (C(p,gases)). It is found that the introduction of methylene nitrate group could decrease the specific impulses on whole. Moreover, in combination with the energetic properties, xylitol pentanitrate, mannitol hexanitrate, volemitol heptanitrate, and 1,2,3,4,5,6,7,8-octanitrate n-octane are potential candidates for high energy density compounds.

DFT studies on a high energy density cage compound 4-trinitroethyl-2,6,8,10,12-pentanitrohezaazaisowurtzitane.

Polynitro cage compound 4-trinitroethyl-2,6,8,10,12-pentanitrohexaazaisowurtzitane has the same framework with but higher stability than CL-20 and is a potential new high energy density compound (HEDC). In this paper, the B3LYP/6-31G(d,p) method of density functional theory (DFT) has been used to study its heat of formation, IR spectrum, and thermodynamic properties. The stability of the compound was evaluated by the bond dissociation energies. The calculated results show that the first step of pyrolysis is the rupture of the N-NO(2) bond in the side chain and verify the experimental observation that the title compound has better stability than CL-20. The crystal structure obtained by molecular mechanics belongs to the P2(1)2(1)2(1) space group, with lattice parameters a = 12.59 Å, b = 10.52 Å, c = 12.89 Å, Z = 4, and ρ = 2.165 g·cm(-3). Both the detonation velocity of 9.767 km·s(-1) and the detonation pressure of 45.191 GPa estimated using the Kamlet-Jacobs equation are better than those of CL-20. Considering that this cage compound has a better detonation performance and stability than CL-20, it may be a superior HEDC.

Design of pH-Responsive Dissociable Nanosystem Based on Carbon Dots with Enhanced Anti-biofilm Property and Excellent Biocompatibility.

Bacterial biofilm poses a serious threat to human health, leading to increased and prolonged bacterial infections. How to solve the problem of eliminating biofilms effectively and rapidly while being nontoxic to normal cells is still a challenge. Here, we design a pH-sensitive anti-biofilm nanosystem formed by self-assembly between negatively charged carboxyl groups of poly(ethylene glycol_-COOH-polyethylenimine-2,3-dimethylmaleic anhydride (PPD) and positively charged amines on the surface of carbon dots derived from the ashes of calcined l-lysine powder (CDLys) (PPD@CDLys for short). The outmost copolymer could make PPD@CDLys facilely diffuse into the dense biofilm and reverse to be positively charged via hydrolysis, which lead to the acid-triggered disassembly of the nanosystem. After hydrolyzation, PPD would turn into a biocidal cationic polymer, which is prone to attaching on bacteria inside the biofilm and efficiently killing them. In addition, the released CDLys could induce intracellular reactive oxygen species (ROS) across the whole biofilm to degrade the matrix of extracellular polymer substances and kill resident bacteria deep into the biofilm. Finally, the prepared nanosystem effectively inhibits the formation of Staphylococcus aureus biofilm and rapidly destroys the mature biofilm by the synergy antibacterial effects of the cation and ROS. We also evaluate the biocompatibility of the nanocomposites. The results show that PPD@CQDLys has no toxicity to L929 and 3T3 cells and exhibits a zero hemolytic rate even when the concentration is up to 2000 µg/mL. The outstanding biocompatibility coupled with rapid anti-biofilm ability of the nanosystem presents an opportunity for it to be utilized as an effective pH-responsive and targetable anti-biofilm agent for controlling bacterial infections.

Theoretical study on the gas-phase reaction mechanism of ammonia with nitrous oxide.

Applications of nitrous oxide (N2O) as an oxidant in green propellants and propulsion systems have attracted a lot of attention. In this study, the reaction pathways for the oxidation of ammonia (NH3) with N2O were studied using the B3LYP/6-31++G** method of density functional theory (DFT). The results reveal that the reaction between N2O and NH3 proceeds through a chain reaction mechanism. N2O reacts with NH3 to form N2 and NH3O first and then NH3O decomposes into NH3 and O. This process corresponds to the apparent reaction N2O+M=N2+O+M (M=NH3), but the energy barrier of the process (183.49 kJ/mol) is much lower than the direct decomposition reaction of N2O=N2+O (279.05 kJ/mol). The O radical produced in this process reacts subsequently with NH3 and N2O to produce more radicals such as NH2, OH, and NO, which will take part in further reactions like NH3+OH=NH2+H2O and NH2+NO=N2+H2O until the reactants are consumed.