Detalhe da pesquisa
1.
Genome-wide single-molecule analysis of long-read DNA methylation reveals heterogeneous patterns at heterochromatin that reflect nucleosome organisation.
PLoS Genet
; 19(10): e1010958, 2023 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-37782664
2.
Quantifying and correcting bias in transcriptional parameter inference from single-cell data.
Biophys J
; 123(1): 4-30, 2024 01 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-37885177
3.
Solving stochastic gene-expression models using queueing theory: A tutorial review.
Biophys J
; 123(9): 1034-1057, 2024 May 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-38594901
4.
Solving the time-dependent protein distributions for autoregulated bursty gene expression using spectral decomposition.
J Chem Phys
; 160(7)2024 Feb 21.
Artigo
em Inglês
| MEDLINE | ID: mdl-38364008
5.
DelaySSAToolkit.jl: stochastic simulation of reaction systems with time delays in Julia.
Bioinformatics
; 38(17): 4243-4245, 2022 09 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-35799359
6.
Characterizing non-exponential growth and bimodal cell size distributions in fission yeast: An analytical approach.
PLoS Comput Biol
; 18(1): e1009793, 2022 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-35041656
7.
Concentration fluctuations in growing and dividing cells: Insights into the emergence of concentration homeostasis.
PLoS Comput Biol
; 18(10): e1010574, 2022 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-36194626
8.
Model reduction for the Chemical Master Equation: An information-theoretic approach.
J Chem Phys
; 158(11): 114113, 2023 Mar 21.
Artigo
em Inglês
| MEDLINE | ID: mdl-36948813
9.
Exact solution of a three-stage model of stochastic gene expression including cell-cycle dynamics.
J Chem Phys
; 159(22)2023 Dec 14.
Artigo
em Inglês
| MEDLINE | ID: mdl-38063222
10.
Analytical distributions for detailed models of stochastic gene expression in eukaryotic cells.
Proc Natl Acad Sci U S A
; 117(9): 4682-4692, 2020 03 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-32071224
11.
MomentClosure.jl: automated moment closure approximations in Julia.
Bioinformatics
; 38(1): 289-290, 2021 12 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-34170295
12.
Stochastic Modeling of Autoregulatory Genetic Feedback Loops: A Review and Comparative Study.
Biophys J
; 118(7): 1517-1525, 2020 04 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-32155410
13.
A Stochastic Model of Gene Expression with Polymerase Recruitment and Pause Release.
Biophys J
; 119(5): 1002-1014, 2020 09 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-32814062
14.
Statistics of Nascent and Mature RNA Fluctuations in a Stochastic Model of Transcriptional Initiation, Elongation, Pausing, and Termination.
Bull Math Biol
; 83(1): 3, 2020 12 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-33351158
15.
Dynamical phase diagram of an auto-regulating gene in fast switching conditions.
J Chem Phys
; 152(17): 174110, 2020 May 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-32384856
16.
Small protein number effects in stochastic models of autoregulated bursty gene expression.
J Chem Phys
; 152(8): 084115, 2020 Feb 28.
Artigo
em Inglês
| MEDLINE | ID: mdl-32113345
17.
Stochastic time-dependent enzyme kinetics: Closed-form solution and transient bimodality.
J Chem Phys
; 153(16): 164113, 2020 Oct 28.
Artigo
em Inglês
| MEDLINE | ID: mdl-33138415
18.
Revisiting the Reduction of Stochastic Models of Genetic Feedback Loops with Fast Promoter Switching.
Biophys J
; 117(7): 1311-1330, 2019 10 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-31540707
19.
Spatial Stochastic Intracellular Kinetics: A Review of Modelling Approaches.
Bull Math Biol
; 81(8): 2960-3009, 2019 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-29785521
20.
Insight into nuclear body formation of phytochromes through stochastic modelling and experiment.
Phys Biol
; 15(5): 056003, 2018 05 18.
Artigo
em Inglês
| MEDLINE | ID: mdl-29714708