Study on the Method of Voigt Profiles Two Wings Fitting Non-Uniform Flow Field Absorbance.

In the field of the absorption spectrum, especially for direct tunable diode laser absorption spectroscopy (dTDLAS) technology, the integrated area of the absorption spectrum is needed to be measured accurately for calculating the temperature and the component concentration of the flow field. Doing single optical path absorption spectroscopic measurement in the non-uniform flow field, spectral lineshape broadening is varied with the flow changes, in previous research reports, researchers mainly use single Voigt or Lorentz profile to fit absorbance curve or use directly integral to obtain the integrated area of the absorption spectrum. There are some shortcomings in these methods, resulting in certain error between the fitting result and the actual area, which is not conducive to the accurate measurement of flow field parameters. Firstly, the error is analyzed theoretically, and then, we adopt the simulation method to obtain the error size of the method. Finally, we proposed the Voigt wings fitting absorbance method to reduce the fitting error. The operation of Voigt wings fitting method is to Select the wings of the spectral line, and then use Voigt profile fitting, The difference between the two wings was used the numerical integral method to calculate area, the integrated area is sum of Voigt profile fitting area and numerical integral area. We have used water vapor as the target gas, with eight absorption lines which have different low-level states energy from HITRAN 2012 database being selected-, building two kinds of non-uniform flow field model base on the flat flame furnace, and through the method of segmentation to equivalent processing the no uniformity of flow field. Using Voigt profile fitting method, numerical integral method and Voigt profile wings fitting method to obtain the integral area of models, the error size is obtained by comparing with the theoretical value. As the result of contrast, the fitting error of Voigt profile fitting method is large and related to the different absorption line, the error of numerical integral method is biggest but it is nothing to do with absorption line, the fitting error of Voigt profile wings fitting method is least and stable. By force of contrast, we determined the appropriate method to obtain integral area in the different non-uniform flow field, which is beneficial to obtain accurate integrated area and flow field parameters.

Conditional inactivation of the DNA damage response gene Hus1 in mouse testis reveals separable roles for components of the RAD9-RAD1-HUS1 complex in meiotic chromosome maintenance.

The RAD9-RAD1-HUS1 (9-1-1) complex is a heterotrimeric PCNA-like clamp that responds to DNA damage in somatic cells by promoting DNA repair as well as ATR-dependent DNA damage checkpoint signaling. In yeast, worms, and flies, the 9-1-1 complex is also required for meiotic checkpoint function and efficient completion of meiotic recombination; however, since Rad9, Rad1, and Hus1 are essential genes in mammals, little is known about their functions in mammalian germ cells. In this study, we assessed the meiotic functions of 9-1-1 by analyzing mice with germ cell-specific deletion of Hus1 as well as by examining the localization of RAD9 and RAD1 on meiotic chromosomes during prophase I. Hus1 loss in testicular germ cells resulted in meiotic defects, germ cell depletion, and severely compromised fertility. Hus1-deficient primary spermatocytes exhibited persistent autosomal γH2AX and RAD51 staining indicative of unrepaired meiotic DSBs, synapsis defects, an extended XY body domain often encompassing partial or whole autosomes, and an increase in structural chromosome abnormalities such as end-to-end X chromosome-autosome fusions and ruptures in the synaptonemal complex. Most of these aberrations persisted in diplotene-stage spermatocytes. Consistent with a role for the 9-1-1 complex in meiotic DSB repair, RAD9 localized to punctate, RAD51-containing foci on meiotic chromosomes in a Hus1-dependent manner. Interestingly, RAD1 had a broader distribution that only partially overlapped with RAD9, and localization of both RAD1 and the ATR activator TOPBP1 to the XY body and to unsynapsed autosomes was intact in Hus1 conditional knockouts. We conclude that mammalian HUS1 acts as a component of the canonical 9-1-1 complex during meiotic prophase I to promote DSB repair and further propose that RAD1 and TOPBP1 respond to unsynapsed chromatin through an alternative mechanism that does not require RAD9 or HUS1.

The role of MATER in endoplasmic reticulum distribution and calcium homeostasis in mouse oocytes.

Ca(2+) oscillations are a hallmark of mammalian fertilization and play a central role in the activation of development. The calcium required for these oscillations is primarily derived from the endoplasmic reticulum (ER), which accumulates in clusters at the microvillar subcortex during oocyte maturation. The migration of the ER to the cortex during maturation is thought to play an important role in rendering the ER competent to generate the calcium transients, and the redistribution of ER is believed to be primarily mediated by microtubules and microfilaments. We have previously shown that the oocyte- and early embryo-restricted maternal effect gene Mater (Nlrp5) localizes to, and is required for, formation of the oocyte cytoplasmic lattices, a tubulin-containing structure that appears to play an important role in organelle positioning and distribution during oocyte maturation. Given these observations, we hypothesized that Mater may also be required for ER redistribution and Ca(2+) homeostasis in oocytes. To test this hypothesis, we first investigated ER localization in metaphase-II Mater(tm/tm) (hypomorph) oocytes and found ER clusters to be less abundant at the microvillar cortex when compared to wild type oocytes. To examine the potential mechanisms by which MATER mediates ER redistribution, we tested whether tubulin expression levels and localization were affected in the mutant oocytes and found that the Triton-insoluble fraction of tubulin was significantly decreased in Mater(tm/tm) oocytes. To identify potential functional defects associated with these ER abnormalities, we next set out to investigate if the pattern of Ca(2+) oscillations was altered in Mater(tm/tm) oocytes after fertilization in vitro. Intriguingly, Ca(2+) oscillations in Mater(tm/tm) oocytes exhibited a significantly lower first peak amplitude and a higher frequency when compared to wild type oocytes. We then found that the Ca(2+) oscillation defect in Mater(tm/tm) oocytes was likely caused by a reduced amount of Ca(2+) in the ER stores. Taken together, these observations support the hypothesis that MATER is required for ER distribution and Ca(2+) homeostasis in oocytes, likely due to defects in lattice-mediated ER positioning and/or redistribution.

[Laser Tuning Performance Testing and Optimization in TDLAS Oxygen Measuring Systems].

TDLAS (tunable diode laser absorption spectroscopy) technology, with its unmatched advantages such as high selectivity molecular spectra, fast response, high sensitivity, non-contact measuring, become the preferred scheme for combustion process diagnosis, and can be effectively used for oxygen measuring. DFB (distributed feedback) laser diode with its small size, low power consumption, long service life, narrow linewidth, tunable wavelength has become the main choice of the TDLAS system. Performance of laser tuning characteristics is a key factor restricting TDLAS's measuring performance. According to TDLAS oxygen measuring system's working requirements, a simple experimental method was used to test and analyze tuning characteristics such as wavelength current, power current and wavelength temperature of a 764 nm DFB laser diode in the system. Nonlinear distortion of tuning curves was obvious, which affects oxygen measuring accuracy. The laser spectra's characteristics such as narrow linewidth, high side mode suppression ratio and wide wavelength tuning range are obvious, while its wavelength-current tuning curve with a tuning rate of about 0.023 nm x mA(-1) is not strictly linear. The higher the temperature the greater the threshold current, the PI curve is not strictly linear either. Temperature tuning curve is of good linearity, temperature-wave-length tuning rate keeps constant of about 0.056 nm/DEG C. Temperature tuning nonlinearity can be improved by high temperature control accuracy, and current power nonlinearity can be improved by setting the reference light path. In order to solve the wavelength current tuning nonlinear problems, the method of DA controlling injection current was considered to compensate for non-linear wavelength current tuning according to DFB laser diode tuning mechanism and polynomial fitting of test results. In view of different type of lasers, this method needs only one polynomial fitting process before the system's initial work. The compensation scheme is reasonable and the realization is simple, what's more, it does not affect the measuring process. The experiments prove that XI curve's linear fit residuals are less than 1 µm after compensation, far less than those of before compensation 22 pm, the compensation effect is obvious, which provided a basis for various oxygen parameters' TDLAS measuring and inversion.

[Measurements of CO2 Concentration Profile in Troposphere Based on Balloon-Borne TDLAS System].

The main source and sink of CO2 in the atmosphere are concentrated in the troposphere. It is of great significance to the study of CO2 flux and global climate change to obtain the accurate tropospheric CO2 concentration profile. For the characteristics of high resolution, high sensitivity and fast response of tunable diode laser absorption spectroscopy (TDLAS), a compact balloon-borne system based on direct absorption was developed to detect the CO2 concentration profiles by use of the 2 004. 02 nm, R(16), v1+v3 line without the interfere of H2O absorption and the CO2 density of the number of molecules below 10 km in the troposphere was obtained. Due to the balloon-borne environment, a compact design of one single board integrated with laser driver, signal conditioning, spectra acquiring and concentration retrieving was developed. Limited by the working capability and hardware resources of embedded micro-processor, the spectra processing algorithm was optimized to reduce the time-cost. Compared with the traditional TDLAS sensors with WMS technique, this system was designed based on the direct absorption technique by means of an open-path Herriott cell with 20 m optical-path, which avoided the process of standardization and enhanced the environmental adaptation. The universal design of hardware and software platform achieved diverse gas measuring by changing the laser and adjusting some key parameters in algorithm. The concept of compact design helped to reduce the system's power and volume and balanced the response speed and measure precision. The power consumes below 1.5 W in room temperature and the volume of the single board is 120 mm x 100 mm x 25 mm, and the measurement accuracy is ± 0.6 x 10(-6) at 1.5 s response time. It has been proved that the system can realize high precision detection of CO2 profile at 15 m vertical resolution in troposphere and TDLAS is an available method for balloon-borne detection.

[Reconstruction Research for Gas Concentration and Temperature of Flame Based on Algebraic Reconstruction Technique].

We specify water vapor among combustion products as the target gas based on tunable diode absorption spectroscopy in this paper. The direct absorption signals of water vapor after being processed can be used to calculate the gas concentration distributions and temperature distributions of the combustion region of methane and air flat flame furnace via algebraic reconstruction technique (ART). In the numerical simulation, reconstruction region is a grid of five by five, we assume a temperature and water vapor concentration distribution of 25 grid, then simulate different direction laser rays which cross the combustion region, generating projection of each ray, by ART reconstruction algorithm, it turns out that the temperature and water vapor distribution reconstruction error is less than 1%. In the experiment, we chose a distributed-feedback laser to scan the target gas H2O7 153.722, 7 153.748 and 7 154.354 cm(-1) as absorbtion line pair to measure temperature of the flame, we consider the former two line as one absorbtion line. By Stages multi-directional scanning, the authors abtain 16 different regions distributin of temperature and gas concentration of furnace when we collecte 30 different angle data by spectral data processing, reconstruction algorithm, two absorbtion line ratio method for temperature sensing, finding the temperature and water concentration are higher in the center than in the edge, it turns out that the reconstruction algorithm is good enough to achieve the distributions of gas concentration and temperature of the combustion region.

Research on remote sensing of broadband absorbers by using near-infrared diode lasers.

This paper reports the development of an experimental technique for optical remote sensing of broadband absorbers in ambient air. Broadband absorbers have been difficult to detect due to a lack of narrow absorption features, which makes it hard to separate them from interference with other absorbing species and background. In combination with a multidimensional linear regression procedure, we have developed a further step to correct for water vapor and background influences. Various physical processes limiting the detection sensitivity were studied and solutions were developed to reduce their influences. Although the received optical signal from backscatter was very weak as no corner cube reflector was used, we have demonstrated the technique on remote sensing of broadband absorption of ethanol vapor in ambient air with a moderate detection limit of 200 ppm · m. This portable handheld system is particularly suitable for quick "point-and-measure" applications. The developed technique is also applicable for detection of other broadband absorbers.

[Study of high temperature water vapor concentration measurement method based on absorption spectroscopy].

Tunable diode laser absorption spectroscopy (TDLAS) has been developed to realize the real-time and dynamic measurement of the combustion temperature, gas component concentration, velocity and other flow parameters, owing to its high sensitivity, fast time response, non-invasive character and robust nature. In order to obtain accurate water vapor concentration at high temperature, several absorption spectra of water vapor near 1.39 µm from 773 to 1273 K under ordinary pressure were recorded in a high temperature experiment setup using a narrow band diode laser. The absorbance of high temperature absorption spectra was calculated by combined multi-line nonlinear least squares fitting method. Two water vapor absorption lines near 7154.35 and 7157.73 cm(-1) were selected for measurement of water vapor at high temperature. A model method for high temperature water vapor concentration was first proposed. Water vapor concentration from the model method at high temperature is in accordance with theoretical reasoning, concentration measurement standard error is less than 0.2%, and the relative error is less than 6%. The feasibility of this measuring method is verified by experiment.

[Simulation and analysis of second-harmonic signal based on tunable diode laser absorption spectroscopy].

Tunable diode laser absorption spectroscopy (TDLAS) is a new gas detection technique developed recently with high spectral resolution, high sensitivity and fast time response. The second-harmonic signal of wavelength modulation spectroscopy (WMS) is often used as the detection signal for gas concentration inversion. Using Simulink, a visual modeling and simulation platform, the authors simulated the WMS signal based on TDLAS, and got the second-harmonic signal by using lock-in amplifier algorithm. Digital orthogonal algorithm was studied in this paper. The relationship between second-harmonic signals and the modulation indexes was analyzed by comparing changes of second-harmonic under different modulation indexes, in order to find out the optimized parameters for second-harmonic detection.

Regulation of mouse oocyte microtubule and organelle dynamics by PADI6 and the cytoplasmic lattices.

Organelle positioning and movement in oocytes is largely mediated by microtubules (MTs) and their associated motor proteins. While yet to be studied in germ cells, cargo trafficking in somatic cells is also facilitated by specific recognition of acetylated MTs by motor proteins. We have previously shown that oocyte-restricted PADI6 is essential for formation of a novel oocyte-restricted fibrous structure, the cytoplasmic lattices (CPLs). Here, we show that α-tubulin appears to be associated with the PADI6/CPL complex. Next, we demonstrate that organelle positioning and redistribution is defective in PADI6-null oocytes and that alteration of MT polymerization or MT motor activity does not induce organelle redistribution in these oocytes. Finally, we report that levels of acetylated microtubules are dramatically suppressed in the cytoplasm of PADI6-null oocytes, suggesting that the observed organelle redistribution failure is due to defects in stable cytoplasmic MTs. These results demonstrate that the PADI6/CPL superstructure plays a key role in regulating MT-mediated organelle positioning and movement.

Potential role for PADI-mediated histone citrullination in preimplantation development.

BACKGROUND: The peptidylarginine deiminases (PADIs) convert positively charged arginine residues to neutrally charged citrulline on protein substrates in a process that is known as citrullination or deimination. Previous reports have documented roles for histone citrullination in chromatin remodeling and gene regulation in several tissue types, however, a potential role for histone citrullination in chromatin-based activities during early embryogenesis has not been investigated. RESULTS: In the present study, we tested by laser scanning confocal indirect immunofluorescence microscopy whether specific arginine residues on the histone H3 and H4 N-terminal tails (H4R3, H3R2 + 8 + 17, and H3R26) were citrullinated in mouse oocytes and preimplantation embryos. Results showed that all of the tested residues were deiminated with each site showing a unique localization pattern during early development. Given these findings, we next tested whether inhibition of PADI activity using the PADI-specific inhibitor, Cl-amidine, may affect embryonic development. We found that treatment of pronuclear stage zygotes with Cl-amidine reduces both histone H3 and H4 tail citrullination and also potently blocks early cleavage divisions in vitro. Additionally, we found that the Cl-amidine treatment reduces acetylation at histone H3K9, H3K18, and H4K5 while having no apparent effect on the repressive histone H3K9 dimethylation modification. Lastly, we found that treatment of zygotes with trichostatin A (TSA) to induce hyperacetylation also resulted in an increase in histone citrullination at H3R2 + 8 + 17. CONCLUSIONS: Given the observed effects of Cl-amidine on embryonic development and the well documented correlation between histone acetylation and transcriptional activation, our findings suggest that histone citrullination may play an important role in facilitating gene expression in early embryos by creating a chromatin environment that is permissive for histone acetylation.

[Measurement of OH radicals in flame with XeCl excimer laser].

The present paper describes how to measure OH radicals in the flame of alcohol burner flame by using XeCl excimer laser. The instrument consists of a XeCl excimer laser as light source, a multiple-reflection cell with whole path length of light achieving 2 560 meters, and a double pass high resolution echelle spectrometer with resolution 3.3 pm. This paper describes the reason for using the XeCl excimer laser without spectral etaloning and how to get rid of the water in reactor chamber. The results of the experiment get some absorption peak of OH radicals from 308.145 to 308.175 nm. By choosing the appropriate fit area and fitting, the results contrast with the measure data by using Xe lamp as light source.

[A mobile sensor for remote detection of natural gas leakage].

The detection of natural gas pipeline leak becomes a significant issue for body security, environmental protection and security of state property. However, the leak detection is difficult, because of the pipeline's covering many areas, operating conditions and complicated environment. A mobile sensor for remote detection of natural gas leakage based on scanning wavelength differential absorption spectroscopy (SWDAS) is introduced. The improved soft threshold wavelet denoising was proposed by analyzing the characteristics of reflection spectrum. And the results showed that the signal to noise ratio (SNR) was increased three times. When light intensity is 530 nA, the minimum remote sensitivity will be 80 ppm x m. A widely used SWDAS can make quantitative remote sensing of natural gas leak and locate the leak source precisely in a faster, safer and more intelligent way.

Ubiquitylated PCNA plays a role in somatic hypermutation and class-switch recombination and is required for meiotic progression.

Somatic hypermutation (SHM) and class-switch recombination (CSR) of Ig genes are dependent upon activation-induced cytidine deaminase (AID)-induced mutations. The scaffolding properties of proliferating cell nuclear antigen (PCNA) and ubiquitylation of its residue K164 have been suggested to play an important role organizing the error-prone repair events that contribute to the AID-induced diversification of the Ig locus. We generated knockout mice for PCNA (Pcna(-/-)), which were embryonic lethal. Expression of PCNA with the K164R mutation rescued the lethal phenotype, but the mice (Pcna(-/-)tg(K164R)) displayed a meiotic defect in early pachynema and were sterile. B cells proliferated normally in Pcna(-/-)tg(K164R) mice, but a PCNA-K164R mutation resulted in impaired ex vivo CSR to IgG1 and IgG3, which was associated with reduced mutation frequency at the switch regions and a bias toward blunt junctions. Analysis of the heavy chain V186.2 region after NP-immunization showed in Pcna(-/-)tg(K164R) mice a significant reduction in the mutation frequency of A:T residues in WA motifs preferred by polymerase-eta (Poleta), and a strand-biased increase in the mutation frequency of G residues, preferentially in the context of AID-targeted GYW motifs. The phenotype of Pcna(-/-)tg(K164R) mice supports the idea that ubiquitylation of PCNA participates directly in the meiotic process and the diversification of the Ig locus through class-switch recombination (CSR) and somatic hypermutation (SHM).

[Measurement of OH radicals in flame with high resolution differential optical absorption spectroscopy].

The present paper describes a new developed high resolution differential optical absorption spectroscopy instrument used for the measurement of OH radicals in flame. The instrument consists of a Xenon lamp for light source; a double pass high resolution echelle spectrometer with a resolution of 3.3 pm; a multiple-reflection cell of 20 meter base length, in which the light reflects in the cell for 176 times, so the whole path length of light can achieve 3 520 meters. The OH radicals'6 absorption lines around 308 nm were simultaneously observed in the experiment. By using high resolution DOAS technology, the OH radicals in candles, kerosene lamp, and alcohol burner flames were monitored, and their concentrations were also inverted.

Gardenia jasminoides Ellis Fruit Extracts Attenuated Colitis in 2,4,6-Trinitrobenzenesulfonic Acid-Induced Rats.

Ulcerative colitis (UC) is a relapsing inflammatory disease with an unknown precise etiology. The purpose of this study is to investigate the protective effects of Gardenia jasminoides Ellis fruit extracts (GFE) on 2,4,6-trinitrobenzenesulfonic acid (TNBS)-induced colitis in rats. GFE (50 mg/kg, 100 mg/kg) were administered orally for 7 days after induction. Meanwhile, the chemical components of GFE were performed by UPLC-QTOF-MS/MS. GFE significantly decreased DAI scores and ameliorated macroscopic and histologic damage. It also reduced the levels of MPO, NO, MDA, IL-1ß, TNF-α, and IL-6, while increasing the level of SOD. Moreover, 56 components were identified in GFE using a UPLC-QTOF-MS/MS method, which can be categorized into six structural groups. Our results indicated that GFE has an ameliorative effect on TNBS-induced colitis in rats, which may further verify its anti-inflammatory and antioxidative properties. Therefore, GFE can be a promising protective agent of colitis that deserves further investigation.

[An investigation of temperature compensation of HCL gas online monitoring based on TDLAS method].

HCL, with the character of strong erosion and toxicity, is a kind of chemical material of vital importance. So measuring the HCL in-situ can not only optimize its production process, but also be necessary to reduce the environment pollution. TDLAS (tunable diode laser absorption spectroscopy) technology, and owning the advantage of the tunability and narrow line width of the diode laser, this method can relatively easily select the absorption line of the detected gas without the interference from other gas, thus making the rapid and accurate HCL measurement possible. In the present paper, the HCL measurement system and the implemented experiment are introduced. The impact of the temperature on the measurement as well as the temperature compensation method is emphasized. The final experimental results validated the rationality of the empirical equation and therefore the improvement of the accuracy and feasibility of the TDLAS technology. The system, whose detection limitation reaches 2 ppm, can satisfy the needs of industrial in-sit measurement.

[Study on the arithmetic of absorbance inversion based on tunable diode-laser absorption spectroscopy].

Tunable diode-laser absorption spectroscopy techniques have been widely used in many regions, such as environmental monitoring and detection of industrial process, due to their high spectral resolution, high sensitivity, fast time response and nonintrusive character. It's important to obtain absorbance curve and integrated absorbance for gas concentration inversion and line strength calibration in direct-absorption spectroscopy techniques. An approach was taken to process the laser direct absorption spectrum. First a low-order polynomial baseline fitting was carried on sub-regions of the transmitted signal to eliminate the effect of diode-laser output fluctuation and obtain the absorbance curve. Then integrated absorbance can be inverted through line-shape fitting using Levenberg-Marquardt non-linear least-squares fitting method. This approach was verified by experimental processing of absorption lines of water vapor.

[Intra-pulse spectroscopy based on room-temperature pulsed quantum-cascade laser for N2O detection].

Mid-infrared lasers are very suitable for high-sensitive trace-gases detection in that their wavelengths cover the fundamental absorption lines of most gases. Quantum-cascade lasers have been demonstrated to be ideal light sources with their especially high power, wide range of tuning capability and favorable operating condition on room-temperature. The intra-pulse spectroscopy based on a room-temperature distributed-feedback pulsed QC laser is a simple and effective trace gas detective method to detect trace-gas qualitatively or quantificationally. When a long excitation pulse is applied to a QC laser, the laser frequency tunes almost linearly to lower wave number (lower frequency) as a function of time so all absorption spectral elements are recorded during a single laser pulse. In the present paper, the method was introduced, and identification of N2O spectral fingerprint using this spectroscopy was demonstrated experimentally. The thermal chirp from a 500 ns long excitation pulse was applied to a quantum-cascade laser to get a fast wavelength scanning, thus a wave number tuning of about 1 cm(-1) was produced. The N2O absorption spectrum centered at 1 273.7 cm(-1) was also obtained. The measured absorption spectrum is consistent with HITRAN data precisely.

[Monitoring of oxygen concentration based on tunable diode laser absorption spectroscopy].

Oxygen is a widely used important gas in the industrial process. It is very meaningful to on-line monitor the oxygen concentration for the enhancement of combustion efficiency and reduction in environmental pollution. Tunable diode laser absorption spectroscopy (TDLAS) is a highly sensitive, highly selective and fast time response trace gas detection technique. With the features of tunability and narrow linewidth of distributed feedback (DFB) diode laser and by precisely tuning the laser output wavelength to a single isolated absorption line of the gas, TDLAS technique can be utilized to accurately implement gas concentration measurement with very high sensitivity. In the present paper, the authors used a DFB laser was used as the light source, and by employing wavelength modulation method and measuring the second harmonic signal of one absorption line near 760 nm of oxygen molecule, the authors built a system for online monitoring of oxygen concentration. The characteristics of the system are as follows: the scope of detection is 0.01%-20%; detection accuracy is 0.1%, long term stability is 1%.