RESUMO
The interaction of water vapor with carbon nanotubes at room temperature has been investigated using Fourier transform (FT) IR spectroscopy and density functional theory (DFT) calculations. FTIR data indicate that water molecules adsorb on single-walled carbon nanotubes at room temperature. Comparison to previous studies suggests that the water forms hydrogen-bonded structures inside the nanotubes. Analysis of the FTIR data demonstrates that a small number of water molecules react with the nanotubes, forming C-O bonds, whereas a majority of the water molecules adsorb intact. The DFT calculations show that cleavage of an O-H bond upon adsorption to form adsorbed -H and -OH groups is energetically favorable at defect sites on nanotubes.
RESUMO
The viability of alpha-carbon deuterated bonds (Calpha-D) as infrared (IR) probes of protein backbone dynamics was explored through a combination of experiment and theory. alpha-Carbon deuterated alanine (Ala-d1) served as a convenient model system for a comparison of experiment, density functional theory (DFT), and combined quantum mechanical/molecular mechanical (QM/MM) simulations of the Calpha-D IR line shape. In addition to the primary Calpha-D absorption, the experimental spectrum contains three features that likely result from Fermi resonances. DFT calculations supported the assignments and identified the lower frequency modes participating in the Fermi resonances. A QM/MM simulation of the Ala-d1 line shape was in qualitative agreement with the experiment, including the presence of classical analogues of Fermi resonances. These studies demonstrated that the Calpha-D line shape is sensitive, via Fermi resonances, to lower frequency collective vibrations that are expected to play a role in protein dynamics and function, and that the QM/MM approach, which is applicable to proteins, is capable of aiding in their interpretation.