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1.
Int J Mol Sci ; 22(19)2021 Sep 23.
Artigo em Inglês | MEDLINE | ID: mdl-34638593

RESUMO

Salt stress tolerance of crop plants is a trait with increasing value for future food production. In an attempt to identify proteins that participate in the salt stress response of barley, we have used a cDNA library from salt-stressed seedling roots of the relatively salt-stress-tolerant cv. Morex for the transfection of a salt-stress-sensitive yeast strain (Saccharomyces cerevisiae YSH818 Δhog1 mutant). From the retrieved cDNA sequences conferring salt tolerance to the yeast mutant, eleven contained the coding sequence of a jacalin-related lectin (JRL) that shows homology to the previously identified JRL horcolin from barley coleoptiles that we therefore named the gene HvHorcH. The detection of HvHorcH protein in root extracellular fluid suggests a secretion under stress conditions. Furthermore, HvHorcH exhibited specificity towards mannose. Protein abundance of HvHorcH in roots of salt-sensitive or salt-tolerant barley cultivars were not trait-specific to salinity treatment, but protein levels increased in response to the treatment, particularly in the root tip. Expression of HvHorcH in Arabidopsis thaliana root tips increased salt tolerance. Hence, we conclude that this protein is involved in the adaptation of plants to salinity.


Assuntos
Hordeum/genética , Lectinas/genética , Lectinas de Plantas/genética , Proteínas de Plantas/genética , Raízes de Plantas/genética , Estresse Salino/genética , Adaptação Fisiológica/genética , Regulação da Expressão Gênica de Plantas/genética , Fenótipo , Salinidade , Tolerância ao Sal/genética , Plântula/genética , Estresse Fisiológico/genética
2.
FEMS Yeast Res ; 20(8)2020 12 17.
Artigo em Inglês | MEDLINE | ID: mdl-33206977

RESUMO

Blastobotrys raffinosifermentans is an ascomycetous yeast with biotechnological applications, recently shown to be an oleaginous yeast accumulating lipids under nitrogen limitation. Diacylglycerol acyltransferases (DGATs) act in the lipid storage pathway, in the last step of triacylglycerol biosynthesis. Two DGAT families are widespread in eukaryotes. We first checked that B. raffinosifermentans strain LS3 possessed both types of DGAT, and we then overexpressed the native DGAT-encoding genes, DGA1 and DGA2, separately or together. DGA2 (from the DGAT1 family) overexpression was sufficient to increase lipid content significantly in LS3, to up to 26.5% of dry cell weight (DCW), 1.6 times the lipid content of the parental strain (16.90% of DCW) in glucose medium under nitrogen limitation. By contrast, DGA1 (of the DGAT2 type) overexpression led to a large increase (up to 140-fold) in the amount of the corresponding transcript, but had no effect on overall lipid content relative to the parental strain. Analysis of the expression of the native genes over time in the parental strain revealed that DGA2 transcript levels quadrupled between 8 and 24 h in the N-limited lipogenic medium, whereas DGA1 transcript levels remained stable. This survey highlights the predominant role of the DGAT1 family in lipid accumulation and demonstrates the suitability of B. raffinosifermentans for engineering for lipid production.


Assuntos
Diacilglicerol O-Aciltransferase/metabolismo , Metabolismo dos Lipídeos , Saccharomycetales/genética , Sequência de Aminoácidos , Diacilglicerol O-Aciltransferase/genética , Ácidos Graxos/análise , Microrganismos Geneticamente Modificados , Saccharomycetales/enzimologia
3.
Appl Microbiol Biotechnol ; 104(8): 3569-3583, 2020 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-32125477

RESUMO

Comparative analyses determined the relationship between the structure of bisphenol A (BPA) as well as of seven bisphenol analogues (bisphenol B (BPB), bisphenol C (BPC), bisphenol E (BPE), bisphenol F (BPF), bisphenol Z (BPZ), bisphenol AP (BPAP), bisphenol PH (BPPH)) and their biotransformability by the biphenyl-degrading bacterium Cupriavidus basilensis SBUG 290. All bisphenols were substrates for bacterial transformation with conversion rates ranging from 6 to 98% within 216 h and 36 different metabolites were characterized. Transformation by biphenyl-grown cells comprised four different pathways: (a) formation of ortho-hydroxylated bisphenols, hydroxylating either one or both phenols of the compounds; (b) ring fission; (c) transamination followed by acetylation or dimerization; and (d) oxidation of ring substituents, such as methyl groups and aromatic ring systems, present on the 3-position. However, the microbial attack of bisphenols by C. basilensis was limited to the phenol rings and its substituents, while substituents on the carbon bridge connecting the rings were not oxidized. All bisphenol analogues with modifications at the carbon bridge could be oxidized up to ring cleavage, while substituents at the 3-position of the phenol ring other than hydroxyl groups did not allow this reaction. Replacing one methyl group at the carbon bridge of BPA by a hydrophobic aromatic or alicyclic ring system inhibited both dimerization and transamination followed by acetylation. While most of the bisphenol analogues exhibited estrogenic activity, four biotransformation products tested were not estrogenically active.


Assuntos
Compostos Benzidrílicos/metabolismo , Biotransformação , Cupriavidus/metabolismo , Compostos Benzidrílicos/classificação , Cicloexanos/metabolismo , Fenóis/metabolismo , Microbiologia do Solo , Relação Estrutura-Atividade , Espectrometria de Massas em Tandem
4.
Int J Mol Sci ; 21(19)2020 Sep 24.
Artigo em Inglês | MEDLINE | ID: mdl-32987747

RESUMO

Industrialized tomato production faces a decrease in flavors and nutritional value due to conventional breeding. Moreover, tomato production heavily relies on nitrogen and phosphate fertilization. Phosphate uptake and improvement of fruit quality by arbuscular mycorrhizal (AM) fungi are well-studied. We addressed the question of whether commercially used tomato cultivars grown in a hydroponic system can be mycorrhizal, leading to improved fruit quality. Tomato plants inoculated with Rhizophagus irregularis were grown under different phosphate concentrations and in substrates used in industrial tomato production. Changes in fruit gene expression and metabolite levels were checked by RNAseq and metabolite determination, respectively. The tests revealed that reduction of phosphate to 80% and use of mixed substrate allow AM establishment without affecting yield. By comparing green fruits from non-mycorrhizal and mycorrhizal plants, differentially expressed genes (DEGs) were found to possibly be involved in processes regulating fruit maturation and nutrition. Red fruits from mycorrhizal plants showed a trend of higher BRIX values and increased levels of carotenoids in comparison to those from non-mycorrhizal plants. Free amino acids exhibited up to four times higher levels in red fruits due to AM, showing the potential of mycorrhization to increase the nutritional value of tomatoes in industrialized production.


Assuntos
Frutas , Fungos/fisiologia , Hidroponia , Micorrizas/fisiologia , Fósforo/metabolismo , Solanum lycopersicum , Carotenoides/metabolismo , Frutas/crescimento & desenvolvimento , Regulação da Expressão Gênica de Plantas , Solanum lycopersicum/crescimento & desenvolvimento , Solanum lycopersicum/microbiologia , Valor Nutritivo , Transcriptoma
5.
Plant Cell Environ ; 41(6): 1311-1330, 2018 06.
Artigo em Inglês | MEDLINE | ID: mdl-29385242

RESUMO

Although the physiological consequences of plant growth under saline conditions have been well described, understanding the core mechanisms conferring plant salt adaptation has only started. We target the root plasma membrane proteomes of two barley varieties, cvs. Steptoe and Morex, with contrasting salinity tolerance. In total, 588 plasma membrane proteins were identified by mass spectrometry, of which 182 were either cultivar or salinity stress responsive. Three candidate proteins with increased abundance in the tolerant cv. Morex were involved either in sterol binding (a GTPase-activating protein for the adenosine diphosphate ribosylation factor [ZIGA2], and a membrane steroid binding protein [MSBP]) or in phospholipid synthesis (phosphoethanolamine methyltransferase [PEAMT]). Overexpression of barley MSBP conferred salinity tolerance to yeast cells, whereas the knock-out of the heterologous AtMSBP1 increased salt sensitivity in Arabidopsis. Atmsbp1 plants showed a reduced number of lateral roots under salinity, and root-tip-specific expression of barley MSBP in Atmsbp1 complemented this phenotype. In barley, an increased abundance of MSBP correlates with reduced root length and lateral root formation as well as increased levels of auxin under salinity being stronger in the tolerant cv. Morex. Hence, we concluded the involvement of MSBP in phytohormone-directed adaptation of root architecture in response to salinity.


Assuntos
Membrana Celular/metabolismo , Hordeum/metabolismo , Proteínas de Membrana/metabolismo , Proteínas de Plantas/metabolismo , Raízes de Plantas/anatomia & histologia , Proteoma/metabolismo , Proteômica/métodos , Salinidade , Ácido Abscísico/metabolismo , Adaptação Fisiológica/efeitos dos fármacos , Membrana Celular/efeitos dos fármacos , Cromatografia de Fase Reversa , Genótipo , Hordeum/efeitos dos fármacos , Hordeum/fisiologia , Ácidos Indolacéticos/metabolismo , Raízes de Plantas/efeitos dos fármacos , Raízes de Plantas/crescimento & desenvolvimento , Raízes de Plantas/metabolismo , Sesquiterpenos/metabolismo , Cloreto de Sódio/farmacologia , Esteroides/metabolismo , Estresse Fisiológico/efeitos dos fármacos
6.
FEMS Yeast Res ; 18(2)2018 03 01.
Artigo em Inglês | MEDLINE | ID: mdl-29462295

RESUMO

A wide range of commercially relevant aromatic chemicals can be synthesized via the shikimic acid pathway. Thus, this pathway has been the target of diverse metabolic engineering strategies. In the present work, an optimized yeast strain for production of the shikimic acid pathway intermediate 3-dehydroshikimate (3-DHS) was generated, which is a precursor for the production of the valuable compounds cis, cis-muconic acid (CCM) and gallic acid (GA). Production of CCM requires the overexpression of the heterologous enzymes 3-DHS dehydratase AroZ, protocatechuic acid (PCA) decarboxylase AroY and catechol dioxygenase CatA. The activity of AroY limits the yield of the pathway. This repertoire of enzymes was expanded by a novel fungal decarboxylase. Introducing this enzyme into the pathway in the optimized strain, a titer of 1244 mg L-1 CCM could be achieved, yielding 31 mg g-1 glucose. This represents the highest yield of this compound reported in Saccharomyces cerevisiae to date. To demonstrate the applicability of the optimized strain for production of other compounds from 3-DHS, we overexpressed AroZ together with a mutant of a para-hydroxybenzoic acid hydroxylase with improved substrate specificity for PCA, PobAY385F. Thereby, we could demonstrate the production of GA for the first time in S. cerevisiae.


Assuntos
Redes e Vias Metabólicas , Saccharomyces cerevisiae/metabolismo , Ácido Chiquímico/metabolismo , Ácido Sórbico/análogos & derivados , Expressão Gênica , Regulação Fúngica da Expressão Gênica , Mutação , Saccharomyces cerevisiae/enzimologia , Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/metabolismo , Ácido Chiquímico/química , Ácido Sórbico/química , Ácido Sórbico/metabolismo
7.
Biotechnol Bioeng ; 114(7): 1539-1549, 2017 07.
Artigo em Inglês | MEDLINE | ID: mdl-28092110

RESUMO

A biosensor detecting estrogens, progestogens, and androgens in complex samples and in a single step is described. Three Arxula adeninivorans yeast strains were created, each strain producing a different recombinant human hormone receptor and a different fluorescent reporter protein. These strains were then mixed to create G1212/YRC102-hHR-fluo, the biological component of the biosensor. During incubation with G1212/YRC102-hHR-fluo, hormones present in a sample bind to their target receptor, which leads to the production of a specific fluorescent protein. Three fluorescence scans of the yeast suspension determine which fluorescence protein has been produced, thus revealing which hormone receptor (estrogen, progesterone, and androgen) has been activated by the hormones or hormone mimics present in the sample. The biosensor has similar sensitivities to the existing A. adeninivorans cell-based assays. The detection of the three hormone classes in one single experiment reduces the labor and time required to assay for the three hormone classes. The biosensor was also trialed with animal serum samples for the detection of progestogens, androgens, and estrogens and gave results that correlated well with ELISA analysis in case of progestogens. These results highlight the potential usefulness of the biosensor for comprehensive determination of hormone status in samples from veterinary origin. Biotechnol. Bioeng. 2017;114: 1539-1549. © 2017 Wiley Periodicals, Inc.


Assuntos
Ascomicetos/classificação , Ascomicetos/efeitos dos fármacos , Bioensaio/instrumentação , Técnicas Biossensoriais/instrumentação , Hormônios Esteroides Gonadais/sangue , Hormônios Esteroides Gonadais/farmacologia , Animais , Callithrix , Desenho de Equipamento , Análise de Falha de Equipamento , Hormônios Esteroides Gonadais/análise , Reprodutibilidade dos Testes , Sensibilidade e Especificidade , Especificidade da Espécie , Espectrometria de Fluorescência/instrumentação
8.
Microb Cell Fact ; 16(1): 144, 2017 Aug 17.
Artigo em Inglês | MEDLINE | ID: mdl-28818103

RESUMO

BACKGROUND: In recent years the production of biobased biodegradable plastics has been of interest of researchers partly due to the accumulation of non-biodegradable plastics in the environment and to the opportunity for new applications. Commonly investigated are the polyhydroxyalkanoates (PHAs) poly(hydroxybutyrate) and poly(hydroxybutyrate-co-hydroxyvalerate) (PHB-V). The latter has the advantage of being tougher and less brittle. The production of these polymers in bacteria is well established but production in yeast may have some advantages, e.g. the ability to use a broad spectrum of industrial by-products as a carbon sources. RESULTS: In this study we increased the synthesis of PHB-V in the non-conventional yeast Arxula adeninivorans by stabilization of polymer accumulation via genetic modification and optimization of culture conditions. An A. adeninivorans strain with overexpressed PHA pathway genes for ß-ketothiolase, acetoacetyl-CoA reductase, PHAs synthase and the phasin gene was able to accumulate an unexpectedly high level of polymer. It was found that an optimized strain cultivated in a shaking incubator is able to produce up to 52.1% of the DCW of PHB-V (10.8 g L-1) with 12.3%mol of PHV fraction. Although further optimization of cultivation conditions in a fed-batch bioreactor led to lower polymer content (15.3% of the DCW of PHB-V), the PHV fraction and total polymer level increased to 23.1%mol and 11.6 g L-1 respectively. Additionally, analysis of the product revealed that the polymer has a very low average molecular mass and unexpected melting and glass transition temperatures. CONCLUSIONS: This study indicates a potential of use for the non-conventional yeast, A. adeninivorans, as an efficient producer of polyhydroxyalkanoates.


Assuntos
Poliésteres/metabolismo , Saccharomycetales/metabolismo , Acetil-CoA C-Aciltransferase/genética , Acetil-CoA C-Aciltransferase/metabolismo , Aciltransferases/genética , Aciltransferases/metabolismo , Oxirredutases do Álcool/genética , Oxirredutases do Álcool/metabolismo , Técnicas de Cultura Celular por Lotes , Reatores Biológicos , Proteínas Fúngicas/metabolismo , Cromatografia Gasosa-Espectrometria de Massas , Microscopia Eletrônica de Transmissão , Lectinas de Plantas/genética , Lectinas de Plantas/metabolismo , Plasmídeos/genética , Plasmídeos/metabolismo , Poliésteres/análise , Poliésteres/química , Saccharomycetales/enzimologia , Saccharomycetales/crescimento & desenvolvimento
9.
Appl Microbiol Biotechnol ; 101(11): 4725-4736, 2017 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-28299399

RESUMO

The yeast Arxula adeninivorans has previously been shown to naturally secrete the redox molecule uric acid (UA). This property suggested that A. adeninivorans may be capable of functioning as the catalyst for a mediator-less yeast-based microbial fuel cell (MFC) if the level of UA it secretes could be increased. We investigated the effects of a number of parameters on the level of UA produced by A. adeninivorans. The concentration of UA accumulated in a dense cell suspension of A. adeninivorans after 20 h incubation was shown to be significantly lower in aerated suspensions compared with that in anaerobic conditions due to UA being rapidly oxidised by dissolved oxygen. The presence of carbon sources, glucose and glycerol, both caused a reduction in UA production compared with that in starvation conditions. The transgenic A. adeninivorans strain, G1221 (auox), showed higher UA production at 37 °C, but at 47 °C, the wild-type LS3 accumulated higher concentrations; however, elevated temperatures also resulted in very high cell mortality rates. An initial buffer pH of 8 caused a higher concentration of UA to accumulate, but high pH is detrimental to cell metabolism and the cells actively work to lower the pH of their environment. It appears that most parameters which increase the amount of UA produced by A. adeninivorans have concomitant disadvantages for cell metabolism, and as such, its potential as a self-mediating MFC catalyst seems doubtful.


Assuntos
Saccharomycetales/metabolismo , Ácido Úrico/metabolismo , Biocatálise , Fenômenos Bioquímicos , Fontes de Energia Bioelétrica , Carbono/metabolismo , Meios de Cultura , Transporte de Elétrons , Meio Ambiente , Expressão Gênica , Glucose/metabolismo , Concentração de Íons de Hidrogênio , Oxirredução , Oxigênio , Saccharomycetales/genética , Saccharomycetales/crescimento & desenvolvimento
10.
Appl Microbiol Biotechnol ; 101(9): 3743-3758, 2017 May.
Artigo em Inglês | MEDLINE | ID: mdl-28050635

RESUMO

The biphenyl-degrading Gram-negative bacterium Cupriavidus basilensis (formerly Ralstonia sp.) SBUG 290 uses various aromatic compounds as carbon and energy sources and has a high capacity to transform bisphenol A (BPA), which is a hormonally active substance structurally related to biphenyl. Biphenyl-grown cells initially hydroxylated BPA and converted it to four additional products by using three different transformation pathways: (a) formation of multiple hydroxylated BPA, (b) ring fission, and (c) transamination followed by acetylation or dimerization. Products of the ring fission pathway were non-toxic and all five products exhibited a significantly reduced estrogenic activity compared to BPA. Cell cultivation with phenol and especially in nutrient broth (NB) resulted in a reduced biotransformation rate and lower product quantities, and NB-grown cells did not produce all five products in detectable amounts. Thus, the question arose whether enzymes of the biphenyl degradation pathway are involved in the transformation of BPA and was addressed by proteomic analyses.


Assuntos
Compostos Benzidrílicos/metabolismo , Cupriavidus/metabolismo , Estrogênios não Esteroides/metabolismo , Fenóis/metabolismo , Biotransformação , Carbono/metabolismo , Cupriavidus/crescimento & desenvolvimento , Redes e Vias Metabólicas
11.
Yeast ; 33(10): 535-547, 2016 10.
Artigo em Inglês | MEDLINE | ID: mdl-27372304

RESUMO

Blastobotrys adeninivorans (syn. Arxula adeninivorans) is a non-conventional, non-pathogenic, imperfect, haploid yeast, belonging to the subphylum Saccharomycotina, which has to date received comparatively little attention from researchers. It possesses unusual properties such as thermo- and osmotolerance, and a broad substrate spectrum. Depending on the cultivation temperature B. (A.) adeninivorans exhibits different morphological forms and various post-translational modifications and protein expression properties that are strongly correlated with the morphology. The genome has been completely sequenced and, in addition, there is a well-developed transformation/expression platform, which makes rapid, simple gene manipulations possible. This yeast species is a very good host for homologous and heterologous gene expression and is also a useful gene donor. Blastobotrys (A.) adeninivorans is able to use a very wide range of substrates as carbon and/or nitrogen sources and is an interesting organism owing to the presence of many metabolic pathways, for example degradation of n-butanol, purines and tannin. In addition, its unusual properties and robustness make it a useful bio-component for whole cell biosensors. There are currently a number of products on the market produced by B. (A.) adeninivorans and further investigation may contribute further innovative solutions for current challenges that exist in the biotechnology industry. Additionally it may become a useful alternative to existing commercial yeast strains and as a model organism in research. In this review we present information relevant to the exploitation of B. (A.) adeninivorans in research and industrial settings. Copyright © 2016 John Wiley & Sons, Ltd.


Assuntos
Biotecnologia , Pesquisa , Saccharomycetales/fisiologia , Técnicas Biossensoriais/métodos , Biotecnologia/métodos , Biotecnologia/tendências , Carbono/metabolismo , Regulação Fúngica da Expressão Gênica , Genoma Fúngico , Nitrogênio/metabolismo , Pressão Osmótica , Filogenia , Reprodução , Pesquisa/tendências , Saccharomycetales/classificação , Saccharomycetales/genética , Especificidade por Substrato , Termotolerância
12.
FEMS Yeast Res ; 16(3)2016 May.
Artigo em Inglês | MEDLINE | ID: mdl-26912215

RESUMO

In this study, alcohol dehydrogenase 1 from Arxula adeninivorans (Aadh1p) was identified and characterized. Aadh1p showed activity with short and medium chain length primary alcohols in the forward reaction and their aldehydes in the reverse reaction. Aadh1p has 64% identity with Saccharomyces cerevisiae Adh1p, is localized in the cytoplasm and uses NAD(+) as cofactor. Gene expression analysis showed a low level increase in AADH1 gene expression with ethanol, pyruvate or xylose as the carbon source. Deletion of the AADH1 gene affects growth of the cells with 1-butanol, ethanol and glucose as the carbon source, and a strain which overexpressed the AADH1 gene metabolized 1-butanol more rapidly. An ADH activity assay indicated that Aadh1p is a major enzyme for the synthesis of ethanol and the degradation of 1-butanol in A. adeninivorans.


Assuntos
1-Butanol/metabolismo , Álcool Desidrogenase/metabolismo , Etanol/metabolismo , Saccharomycetales/enzimologia , Álcool Desidrogenase/genética , Sequência de Aminoácidos , Carbono/metabolismo , Coenzimas/metabolismo , Citoplasma/química , Perfilação da Expressão Gênica , Dados de Sequência Molecular , NAD/metabolismo , Ácido Pirúvico/metabolismo , Saccharomycetales/genética , Homologia de Sequência de Aminoácidos , Xilose/metabolismo
13.
Microb Cell Fact ; 15(1): 175, 2016 Oct 12.
Artigo em Inglês | MEDLINE | ID: mdl-27733155

RESUMO

BACKGROUND: The non-conventional yeast Arxula adeninivorans uses 1-butanol as a carbon source and has recently attracted attention as a promising organism for 1-butanol production. Alcohol dehydrogenases (adhp) are important catalysts in 1-butanol metabolism, but only Aadh1p from Arxula has been characterized. This enzyme is involved in ethanol synthesis but has a low impact on 1-butanol degradation. RESULTS: In this study, we identified and characterized a second adhp from A. adeninivorans (Aadh2p). Compared to Saccharomyces cerevisiae ADHs' (ScAdh) protein sequences it originates from the same ancestral node as ScAdh6p, 7p and 4p. It is also localized in the cytoplasm and uses NAD(H) as cofactor. The enzyme has its highest activity with medium chain-length alcohols and maximum activity with 1-butanol with the catalytic efficiency of the purified enzyme being 42 and 43,000 times higher than with ethanol and acetaldehyde, respectively. Arxula adeninivorans strain G1212/YRC102-AADH2, which expresses the AADH2 gene under the control of the strong constitutive TEF1 promoter was constructed. It achieved an ADH activity of up to 8000 U/L and 500 U/g dry cell weight (dcw) which is in contrast to the control strain G1212/YRC102 which had an ADH activity of up to 1400 U/L and 200 U/g dcw. Gene expression analysis showed that AADH2 derepression or induction using non-fermentable carbon-sources such as ethanol, pyruvate, glycerol or 1-butanol did occur. Compared to G1212/YRC102 AADH2 knock-out strain had a slower growth rate and lower 1-butanol consumption if 1-butanol was used as sole carbon source and AADH2-transformants did not grow at all in the same conditions. However, addition of the branched-chain amino acids leucine, isoleucine and valine allowed the transformants to use 1-butanol as carbon source. The addition of these amino acids to the control strain and Δaadh2 mutant cultures had the effect of accelerating 1-butanol consumption. CONCLUSIONS: Our results confirm that Aadh2p plays a major role in A. adeninivorans 1-butanol metabolism. It is upregulated by up to 60-fold when the cells grow on 1-butanol, whereas only minor changes were found in the relative expression level for Aadh1p. Thus the constitutive overexpression of the AADH2 gene could be useful in the production of 1-butanol by A. adeninivorans, although it is likely that other ADHs will have to be knocked-out to prevent 1-butanol oxidation.


Assuntos
1-Butanol/metabolismo , Álcool Desidrogenase/genética , Álcool Desidrogenase/metabolismo , Redes e Vias Metabólicas/genética , Leveduras/enzimologia , Álcool Desidrogenase/isolamento & purificação , Carbono/metabolismo , Etanol/metabolismo , Expressão Gênica , Técnicas de Inativação de Genes , NAD/metabolismo , Leveduras/genética , Leveduras/crescimento & desenvolvimento , Leveduras/metabolismo
15.
Appl Environ Microbiol ; 81(16): 5497-510, 2015 Aug 15.
Artigo em Inglês | MEDLINE | ID: mdl-26048925

RESUMO

The genes ACUT1, ACUT2, and ACUT3, encoding cutinases, were selected from the genomic DNA of Arxula adeninivorans LS3. The alignment of the amino acid sequences of these cutinases with those of other cutinases or cutinase-like enzymes from different fungi showed that they all had a catalytic S-D-H triad with a conserved G-Y-S-Q-G domain. All three genes were overexpressed in A. adeninivorans using the strong constitutive TEF1 promoter. Recombinant 6× His (6h)-tagged cutinase 1 protein (p) from A. adeninivorans LS3 (Acut1-6hp), Acut2-6hp, and Acut3-6hp were produced and purified by immobilized-metal ion affinity chromatography and biochemically characterized using p-nitrophenyl butyrate as the substrate for standard activity tests. All three enzymes from A. adeninivorans were active from pH 4.5 to 6.5 and from 20 to 30°C. They were shown to be unstable under optimal reaction conditions but could be stabilized using organic solvents, such as polyethylene glycol 200 (PEG 200), isopropanol, ethanol, or acetone. PEG 200 (50%, vol/vol) was found to be the best stabilizing agent for all of the cutinases, and acetone greatly increased the half-life and enzyme activity (up to 300% for Acut3-6hp). The substrate spectra for Acut1-6hp, Acut2-6hp, and Acut3-6hp were quite similar, with the highest activity being for short-chain fatty acid esters of p-nitrophenol and glycerol. Additionally, they were found to have polycaprolactone degradation activity and cutinolytic activity against cutin from apple peel. The activity was compared with that of the 6× His-tagged cutinase from Fusarium solani f. sp. pisi (FsCut-6hp), also expressed in A. adeninivorans, as a positive control. A fed-batch cultivation of the best Acut2-6hp-producing strain, A. adeninivorans G1212/YRC102-ACUT2-6H, was performed and showed that very high activities of 1,064 U ml(-1) could be achieved even with a nonoptimized cultivation procedure.


Assuntos
Hidrolases de Éster Carboxílico/isolamento & purificação , Hidrolases de Éster Carboxílico/metabolismo , Saccharomycetales/enzimologia , Hidrolases de Éster Carboxílico/química , Hidrolases de Éster Carboxílico/genética , Domínio Catalítico , Cromatografia de Afinidade , Estabilidade Enzimática/efeitos dos fármacos , Estabilidade Enzimática/efeitos da radiação , Expressão Gênica , Concentração de Íons de Hidrogênio , Resíduos Industriais , Malus/microbiologia , Estrutura Terciária de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Homologia de Sequência de Aminoácidos , Solventes , Especificidade por Substrato , Temperatura
16.
Protein Expr Purif ; 110: 138-44, 2015 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-25725269

RESUMO

Lipase YlLip11 from Yarrowia lipolytica was expressed with a signal peptide encoding sequence in Arxula adeninivorans, Saccharomyces cerevisiae and Hansenula polymorpha using the Xplor®2 transformation/expression platform and an expression module with the constitutive Arxula-derived TEF1 promoter. The YlLip11 signal peptide was functional in all of the yeast hosts with 97% of the recombinant enzyme being secreted into the culture medium. However, recombinant YlLip11 with His Tag fused at C-terminal was not active. The best recombinant YlLip11 producing A. adeninivorans G1212/YRC102-YlLip11 transformant cultivated in shake flasks produced 2654 U/L lipase, followed by S. cerevisiae SEY6210/YRC103-YlLip11 (1632U/L) and H. polymorpha RB11/YRC103-YlLip11 (1144U/L). Although the biochemical parameters of YlLip11 synthesized in different hosts were similar, their glycosylation level and thermo stability differed. The protein synthesized by the H. polymorpha transformant had the highest degree of glycosylation and with a t1/2 of 60min at 70°C, exhibited the highest thermostability.


Assuntos
Proteínas Fúngicas/genética , Lipase/genética , Pichia/genética , Sinais Direcionadores de Proteínas/genética , Saccharomyces cerevisiae/genética , Saccharomycetales/genética , Yarrowia/genética , Clonagem Molecular , Estabilidade Enzimática , Proteínas Fúngicas/química , Proteínas Fúngicas/isolamento & purificação , Proteínas Fúngicas/metabolismo , Expressão Gênica , Glicosilação , Histidina/química , Histidina/genética , Lipase/química , Lipase/isolamento & purificação , Lipase/metabolismo , Oligopeptídeos/química , Oligopeptídeos/genética , Pichia/química , Pichia/enzimologia , Plasmídeos/química , Plasmídeos/metabolismo , Regiões Promotoras Genéticas , Proteínas Recombinantes de Fusão/química , Proteínas Recombinantes de Fusão/genética , Proteínas Recombinantes de Fusão/isolamento & purificação , Proteínas Recombinantes de Fusão/metabolismo , Saccharomyces cerevisiae/química , Saccharomyces cerevisiae/enzimologia , Saccharomycetales/química , Saccharomycetales/enzimologia , Especificidade da Espécie , Transformação Genética , Yarrowia/química , Yarrowia/enzimologia
17.
Protein Expr Purif ; 105: 61-70, 2015 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-25450238

RESUMO

For the first time, the full length recombinant HER-2[neu] receptor has been produced in a yeast (Arxula adeninivorans). It is one of the most studied membrane receptors in oncology and is involved in aggressive tumor formation. A yeast integration rDNA cassette containing the human gene coding for the HER-2[neu] protein was constructed and a screening procedure was performed to select the most productive transformant. Different detergents were tested for efficient solubilization of the membrane bound protein, with CHAPS giving the best results. To increase the yield of the recombinant protein from HER-2[neu] producing A. adeninivorans, optimal culture parameters were established for cultivation in bioreactor. The recombinant protein was subsequently assayed using ELISA and SPR immunoassays systems with antibodies raised against two different epitopes of the human receptor. In both cases, elution fractions containing the recombinant HER-2[neu] receptor successfully reacted with the immunoassays with limits of quantification below 100ngml(-1). These results demonstrate that the full length recombinant HER-2[neu] reported here has the potential to be a new standard for the detection of HER-2 type cancer.


Assuntos
Receptor ErbB-2/metabolismo , Proteínas Recombinantes/metabolismo , Saccharomycetales/genética , Ensaio de Imunoadsorção Enzimática , Humanos , Receptor ErbB-2/análise , Receptor ErbB-2/química , Receptor ErbB-2/genética , Proteínas Recombinantes/análise , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Ressonância de Plasmônio de Superfície
18.
Anal Bioanal Chem ; 407(26): 8109-20, 2015 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-26307113

RESUMO

This study describes the development of a bioassay to detect the presence of progesterone and progesterone-like molecules in wastewater samples. The basis of the bioassay is the integration of the human progesterone receptor gene into the yeast Arxula adeninivorans for the constitutive synthesis of the receptor. After incubation, binding of the analyte to the receptor induces the production of a reporter protein. Two reporter proteins were compared for detection parameters such as half-maximal activity (EC50), limit of detection (LoD) and limit of quantification (LoQ). When the extracellular phytase K was used, an EC50 value of 155 ng L(-1) and a LoD of 27 ng L(-1) progesterone were obtained after 4 h incubation, while use of the fluorescent dsRED as the reporter protein, resulted in an EC50 of 320 ng L(-1) and a LoD of 65 ng L(-1) after 20 h incubation. Use of phytase K as the reporter protein offers decreased incubation time and increased sensitivity; however the dsRED reporter system is less labor-intensive. Additionally, the affinity of known agonists and antagonists of the human progesterone receptor was determined. The utility of this bioassay was confirmed by measuring total progesterone equivalent concentration of samples from a wastewater treatment plant. The A. adeninivorans-based transactivation assay was able to measure concentrations of about 311 ng L(-1) in the influent stream but could not detect progesterone activity in effluent. One key feature of the assay is the robustness of A. adeninivorans, which allows sample measurement without any sample preparation.


Assuntos
Progesterona/análise , Receptores de Progesterona/genética , Águas Residuárias/análise , Poluentes Químicos da Água/análise , Leveduras/genética , Clonagem Molecular , Corantes Fluorescentes/análise , Corantes Fluorescentes/metabolismo , Expressão Gênica , Genes Reporter , Humanos , Limite de Detecção , Proteínas Luminescentes/análise , Proteínas Luminescentes/genética , Proteínas Luminescentes/metabolismo , Progesterona/metabolismo , Receptores de Progesterona/metabolismo , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Saccharomycetales/genética , Espectrometria de Fluorescência , Transformação Genética , Poluentes Químicos da Água/metabolismo
19.
Appl Microbiol Biotechnol ; 99(11): 4723-33, 2015 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-25535093

RESUMO

The yeast Arxula adeninivorans was used for the overexpression of an ADH gene of Lactobacillus brevis coding for (R)-specific alcohol dehydrogenase (LbADH) to synthesise enantiomerically pure 1-(R)-phenylethanol. Glucose dehydrogenase gene from Bacillus megaterium (BmGDH) or glucose 6-phosphate dehydrogenase of Bacillus pumilus (BpG6PDH) were coexpressed in Arxula to regenerate the cofactor NADPH by oxidising glucose or glucose 6-phosphate. The yeast strain expressing LbADH and BpG6PDH produced 5200 U l(-1) ADH and 370 U l(-1) G6PDH activity, whereas the strain expressing LbADH and BmGDH produced 2700 U l(-1) ADH and 170 U l(-1) GDH activity. However, the crude extract of both strains reduced 40 mM acetophenone to pure 1-(R)-phenylethanol with an enantiomeric excess (ee) of >99 % in 60 min without detectable by-products. An increase in yield was achieved using immobilised crude extracts (IEs), Triton X-100 permeabilised cells (PCs) and permeabilised immobilised cells (PICs) with PICs being most stable with GDH regeneration over 52 cycles. Even though the activity and synthesis rate of 1-(R)-phenylethanol with the BpG6PDH and LbADH coexpressing strain was higher, the BmGDH-LbADH strain was more stable over successive reaction cycles. This, combined with its higher total turnover number (TTN) of 391 mol product per mole NADP(+), makes it the preferred strain for continuous reaction systems. The initial non-optimised semi-continuous reaction produced 9.74 g l(-1) day(-1) or 406 g kg(-1) dry cell weight (dcw) day(-1) isolated 1-(R)-phenylethanol with an ee of 100 % and a TTN of 206 mol product per mole NADP(+). In conclusion, A. adeninivorans is a promising host for LbADH and BpG6PDH or BmGDH production and offers a simple method for the production of enantiomerically pure alcohols.


Assuntos
Álcool Desidrogenase/metabolismo , Álcoois Benzílicos/metabolismo , Glucose 1-Desidrogenase/metabolismo , Glucosefosfato Desidrogenase/metabolismo , Levilactobacillus brevis/enzimologia , Engenharia Metabólica/métodos , Saccharomycetales/metabolismo , Álcool Desidrogenase/genética , Bacillus/enzimologia , Bacillus/genética , Expressão Gênica , Glucose 1-Desidrogenase/genética , Glucosefosfato Desidrogenase/genética , Levilactobacillus brevis/genética , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Saccharomycetales/enzimologia , Saccharomycetales/genética
20.
Appl Microbiol Biotechnol ; 98(5): 2223-9, 2014 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-24407453

RESUMO

The yeast Arxula adeninivorans has been previously shown to secrete a large amount of an electro-active molecule. The molecule was produced by cells that had been cultivated in a rich medium, harvested, washed and then suspended in phosphate-buffered saline (PBS). The molecule was easily detectable after 60 min of incubation in PBS, and the cells continued to produce the molecule in these conditions for up to 3 days. The peak anodic potential of the oxidation peak was 0.42 V, and it was shown to be a solution species rather than a cell-attached species. We have optimised the production of the molecule, identified it by high-pressure liquid chromatography (HPLC) fractionation and high-resolution mass spectrometric analysis and determined the pathway involved in its synthesis. It has a mass/charge ratio that corresponds to uric acid, and this identification was supported by comparing UV spectra and cyclic voltammograms of the samples to those of uric acid. An A. adeninivorans xanthine oxidase gene disruption mutant failed to produce uric acid, which added further validity to this identification. It also demonstrated that the purine catabolism pathway is involved in its production. A transgenic A. adeninivorans strain with a switchable urate oxidase gene (AUOX) accumulated uric acid when the gene was switched off but did not when the gene was switched on. Cultivation of cells on amino acid and purine-free minimal media with an inorganic nitrogen source suggests that the cells synthesise purines from inorganic nitrogen and proceed to degrade them via the normal purine degradation pathway.


Assuntos
Saccharomycetales/metabolismo , Ácido Úrico/metabolismo , Cromatografia Líquida de Alta Pressão , Meios de Cultura/química , Deleção de Genes , Expressão Gênica , Espectrometria de Massas , Redes e Vias Metabólicas/genética , Nitrogênio/metabolismo , Oxirredução , Purinas/metabolismo , Saccharomycetales/enzimologia , Saccharomycetales/genética , Saccharomycetales/crescimento & desenvolvimento , Urato Oxidase/genética , Urato Oxidase/metabolismo , Xantina Oxidase/genética , Xantina Oxidase/metabolismo
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