Detalhe da pesquisa
1.
RCFGL: Rapid Condition adaptive Fused Graphical Lasso and application to modeling brain region co-expression networks.
PLoS Comput Biol
; 19(1): e1010758, 2023 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-36607897
2.
An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis.
Genome Res
; 30(3): 472-484, 2020 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-32132109
3.
Segmented correspondence curve regression for quantifying covariate effects on the reproducibility of high-throughput experiments.
Biometrics
; 79(3): 2272-2285, 2023 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-36056911
4.
Assessing reproducibility of high-throughput experiments in the case of missing data.
Stat Med
; 41(10): 1884-1899, 2022 05 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-35178743
5.
S3norm: simultaneous normalization of sequencing depth and signal-to-noise ratio in epigenomic data.
Nucleic Acids Res
; 48(8): e43, 2020 05 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-32086521
6.
Total Glucosides of Paeony Attenuates Ulcerative Colitis via Inhibiting TLR4/NF-κB Signaling Pathway.
Tohoku J Exp Med
; 258(3): 225-236, 2022 Oct 26.
Artigo
em Inglês
| MEDLINE | ID: mdl-36047132
7.
HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient.
Genome Res
; 27(11): 1939-1949, 2017 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-28855260
8.
Systematic integration of GATA transcription factors and epigenomes via IDEAS paints the regulatory landscape of hematopoietic cells.
IUBMB Life
; 72(1): 27-38, 2020 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-31769130
9.
powerTCR: A model-based approach to comparative analysis of the clone size distribution of the T cell receptor repertoire.
PLoS Comput Biol
; 14(11): e1006571, 2018 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-30485278
10.
Condition-adaptive fused graphical lasso (CFGL): An adaptive procedure for inferring condition-specific gene co-expression network.
PLoS Comput Biol
; 14(9): e1006436, 2018 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-30240439
11.
A regression framework for assessing covariate effects on the reproducibility of high-throughput experiments.
Biometrics
; 74(3): 803-813, 2018 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-29192968
12.
A Continuous Threshold Expectile Model.
Comput Stat Data Anal
; 116: 49-66, 2017 Dec.
Artigo
em Inglês
| MEDLINE | ID: mdl-29255337
13.
Robust bent line regression.
J Stat Plan Inference
; 185: 41-55, 2017 Jun.
Artigo
em Inglês
| MEDLINE | ID: mdl-28943710
14.
A semi-parametric statistical model for integrating gene expression profiles across different platforms.
BMC Bioinformatics
; 17 Suppl 1: 5, 2016 Jan 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-26818110
15.
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia.
Genome Res
; 22(9): 1813-31, 2012 Sep.
Artigo
em Inglês
| MEDLINE | ID: mdl-22955991
16.
Systematic evaluation of factors influencing ChIP-seq fidelity.
Nat Methods
; 9(6): 609-14, 2012 Jun.
Artigo
em Inglês
| MEDLINE | ID: mdl-22522655
17.
Multi-scale biological and physical modelling of the tumour micro-environment.
Drug Discov Today Dis Models
; 16: 7-15, 2015.
Artigo
em Inglês
| MEDLINE | ID: mdl-31303886
18.
Practical guidelines for the comprehensive analysis of ChIP-seq data.
PLoS Comput Biol
; 9(11): e1003326, 2013.
Artigo
em Inglês
| MEDLINE | ID: mdl-24244136
19.
Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes.
bioRxiv
; 2024 Mar 29.
Artigo
em Inglês
| MEDLINE | ID: mdl-37066352
20.
RETROFIT: Reference-free deconvolution of cell-type mixtures in spatial transcriptomics.
bioRxiv
; 2023 Jun 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-37333291