Cell-cell communications shape tumor microenvironment and predict clinical outcomes in clear cell renal carcinoma.

BACKGROUND: Cell-cell communications of various cell populations within tumor microenvironment play an essential role in primary tumor growth, metastasis evolution, and immune escape. Nevertheless, comprehensive investigation of cell-cell communications in the ccRCC (Clear cell renal carcinoma) microenvironment and how this interplay affects prognosis still remains limited. METHODS: Intercellular communications were characterized by single-cell data. Firstly, we employed "CellChat" package to characterize intercellular communications across all types of cells in microenvironment in VHL mutated and non-mutated samples from 8 patients, respectively. And pseudotime trajectory analyses were performed with monocle analyses. Finally clinical prognosis and immunotherapy efficacy with different landscapes of intercellular interplay are evaluated by TCGA-KIRC and immunotherapy cohort. RESULTS: Firstly, the VHL phenotype may be related to the intercellular communication landscape. And trajectory analysis reveals the potential relationship of cell-cell communication molecules with T cells and Myeloid cells differentiation. Furthermore, those molecules also correlate with the infiltration of T cells and Myeloid cells. A tumor cluster with highly expressed ligands was defined by quantitative analysis and transcription factor enrichment analysis, which was identified to be pivotal for intercellular communications in tumor microenvironment. Finally, bulk data indicates bulk that different clusters with different intercellular communications have significant predictive value for prognosis and distinguished immunotherapy efficiency. CONCLUSIONS: The intercellular communication landscapes of VHL wild and VHL mutant ccRCC vary. Intercellular communications within the tumor microenvironment also influence T cell and myeloid cell development and infiltration, as well as predict clinical prognosis and immunotherapy efficacy in ccRCC.

Phytoremediation of Cd and Pb interactive polluted soils by switchgrass (Panicum virgatum L.).

Using phytoremediation as an efficient technique to remove heavy metals from contaminated soils is a current research hotspot. This study used an orthogonal matrix experimental design with three factors (Cd, Pb, and pH) and five levels (Cd at 9.45, 30, 60, 90, and 110.46 µg/g; Pb at 195.4, 400, 700, 1000, and 1204.6 µg/g; and pH at 3, 4.1, 5.8, 7.5, and 8.6) to investigate the phytoremediation potential of Panicum virgatum L. for soils polluted with cadmium (Cd) and lead (Pb). The results indicated that there was a significant decrease in belowground biomass in plants exposed to the stresses compared to the control. Superoxide dismutase (SOD) activity, peroxidase (POD) activity, and malondialdehyde (MDA) content were affected. Interaction of Cd with Pb in the soil had an antagonistic effect on the Cd bioaccumulation factor, whereas the interaction of pH with Cd or Pb had synergistic effects on the Cd bioaccumulation factor. When exposed to the three stressors, switchgrass plants could grow in soil that had a Cd concentration of a 46.68 µg/g, Pb concentration of 568.75 µg/g and pH of 5.34, which is a mildly acidic condition. Switchgrass, used as a phytoremediation plant, was more efficient in Cd-contaminated than in Pb-contaminated soil.

Low intensity focused ultrasound: a new prospect for the treatment of Parkinson's disease.

Background: As a chronic and progressive neurodegenerative disease, Parkinson's disease (PD) still lacks effective and safe targeted drug therapy. Low-intensity focused ultrasound (LIFU), a new method to stimulate the brain and open the blood-brain barrier (BBB), has been widely concerned by PD researchers due to its non-invasive characteristics.Methods: PubMed was searched for the past 10 years using the terms 'focused ultrasound', 'transcranial ultrasound', 'pulse ultrasound', and 'Parkinson's disease'. Relevant citations were selected from the authors' references. After excluding articles describing high-intensity focused ultrasound or non-Parkinson's disease applications, we found more than 100 full-text analyses for pooled analysis.Results: Current preclinical studies have shown that LIFU could improve PD motor symptoms by regulating microglia activation, increasing neurotrophic factors, reducing oxidative stress, and promoting nerve repair and regeneration, while LIFU combined with microbubbles (MBs) can promote drugs to cross the BBB, which may become a new direction of PD treatment. Therefore, finding an efficient drug carrier system is the top priority of applying LIFU with MBs to deliver drugs.Conclusions: This article aims to review neuro-modulatory effect of LIFU and the possible biophysical mechanism in the treatment of PD, summarize the latest progress in delivering vehicles with MBs, and discuss its advantages and limitations.

Neuro-modulatory effects of LIFU at the cellular or molecular level.Opening the BBB through the combination of LIFU and MBs.Biophysical mechanism of LIFU.

Optimizing irrigation and nitrogen fertilization for seed yield in western wheatgrass [Pascopyrum smithii (Rydb.) Á. Löve] using a large multi-factorial field design.

It is crucial for agricultural production to identify the trigger that switches plants from vegetative to reproductive growth. Agricultural sustainability in semiarid regions is challenged by nitrogen (N) fertilizer overuse, inadequate soil water, and heavy carbon emissions. Previous studies focused on the short-term effects of a single application of N and water but have not investigated the long-term effects of different irrigation and N fertilizer regimens on crop yields and yield components. N application is routinely coupled with water availability, and crop yields can be maximized by optimizing both. We examined the growth of western wheatgrass [Pascopyrum smithii (Rydb.) Á. Löve], a temperate-region forage and turf grass, using multiple different combinations of N fertilizer [(NH4)2·CO3] and irrigation levels over 3 years to determine optimal field management. We conducted multifactorial, orthogonally designed field experiments with large sample sizes, and measured fertile tillers m-2 (Y1), spikelets/fertile tillers (Y2), florets/spikelet (Y3), seed numbers/spikelet (Y4), seed weight (Y5), and seed yield (Z) to study factors associated with the switch between vegetative and reproductive growth. Fertilization had a greater effect on seed yield and yield components than irrigation. Y1 had the strongest positive effect on Z, whereas Y5 had a negative effect on Z. Irrigation and fertilization affected Z, Y1, and Y5. Fertilizer concentrations were positively correlated with Z, Y1, and Y5, whereas irrigation levels were negatively correlated. The ridge regression linear model results suggested N application rate and irrigation had antagonistic effects on Y1 (X3 = 867.6-4.23×X2; R2 = 0.988, F = Infinity, P<0.0001). We conclude that the optimal amount of N fertilizer and irrigation was 156 kg ha-1 + 115 mm for seed yield, 120 kg ha-1 + 146 mm for spikelets/fertile tillers, and 108 kg ha-1 + 119 mm for seed numbers/spikelets. These results will improve yield and reduce agricultural inputs for P. smithii in semiarid and arid regions, thereby reducing fertilizer pollution and conserving water.

Effects of ultrasonication on increased germination and improved seedling growth of aged grass seeds of tall fescue and Russian wildrye.

The effects of ultrasonic treatments on the germination and seedling growth of aged tall fescue (Festuca arundinacea) and Russian wild rye (Psathyrostaehys juncea Nevski) seeds were determined using orthogonal matrix experimental design with four ultrasonic factors. The multivariate analysis of variance detected significant differences and coupling effects of the pair-wise factors. The activities of Superoxide Dismutase (SOD) and Peroxidase (POD) and the Malondialdehyde (MDA) content were affected. The ultrasonic treatments had positive effects on the germination percentage (GP) of the aged seeds and the growth of the seedlings (GS) and therefore we provided a basic evidence for the application of ultrasonic treatment to pretreat aged grass seeds. For the four ultrasonic factors, the optimal conditions were a sonication time of 36.7 min, a sonication temperature of 35 °C, an output power of 367 W and a seed soaking time 4.1 h after binary quadratic regressions analyses. The ultrasonic treatment has the potential to improve seedling growth. Moreover, the longevity of the tall fescue and the Russian wild rye seeds was approximately 9.5 and 11.5 years, respectively, under natural conditions of storage. The physiological mechanisms that might contribute to the improved GP and GS were discussed.