Detalhe da pesquisa
1.
Transcription-factor-mediated supervision of global genome architecture maintains B cell identity.
Nat Immunol
; 19(11): 1257-1264, 2018 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-30323344
2.
T cell cytolytic capacity is independent of initial stimulation strength.
Nat Immunol
; 19(8): 849-858, 2018 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-30013148
3.
Orchestrating single-cell analysis with Bioconductor.
Nat Methods
; 17(2): 137-145, 2020 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-31792435
4.
Publisher Correction: Orchestrating single-cell analysis with Bioconductor.
Nat Methods
; 17(2): 242, 2020 Feb.
Artigo
em Inglês
| MEDLINE | ID: mdl-31827272
5.
SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor.
Bioinformatics
; 38(11): 3128-3131, 2022 05 26.
Artigo
em Inglês
| MEDLINE | ID: mdl-35482478
6.
COMRADES determines in vivo RNA structures and interactions.
Nat Methods
; 15(10): 785-788, 2018 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-30202058
7.
Genome-wide analysis reveals no evidence of trans chromosomal regulation of mammalian immune development.
PLoS Genet
; 14(6): e1007431, 2018 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-29883495
8.
Assessing the reliability of spike-in normalization for analyses of single-cell RNA sequencing data.
Genome Res
; 27(11): 1795-1806, 2017 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-29030468
9.
Testing for differential abundance in mass cytometry data.
Nat Methods
; 14(7): 707-709, 2017 Jul.
Artigo
em Inglês
| MEDLINE | ID: mdl-28504682
10.
Specificity of RNAi, LNA and CRISPRi as loss-of-function methods in transcriptional analysis.
Nucleic Acids Res
; 46(12): 5950-5966, 2018 07 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-29860520
11.
Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations.
Genome Res
; 26(6): 719-31, 2016 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-27053337
12.
beachmat: A Bioconductor C++ API for accessing high-throughput biological data from a variety of R matrix types.
PLoS Comput Biol
; 14(5): e1006135, 2018 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-29723188
13.
Repression of Igf1 expression by Ezh2 prevents basal cell differentiation in the developing lung.
Development
; 142(8): 1458-69, 2015 Apr 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-25790853
14.
Overcoming confounding plate effects in differential expression analyses of single-cell RNA-seq data.
Biostatistics
; 18(3): 451-464, 2017 Jul 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-28334062
15.
Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R.
Bioinformatics
; 33(8): 1179-1186, 2017 04 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-28088763
16.
No counts, no variance: allowing for loss of degrees of freedom when assessing biological variability from RNA-seq data.
Stat Appl Genet Mol Biol
; 16(2): 83-93, 2017 04 25.
Artigo
em Inglês
| MEDLINE | ID: mdl-28599403
17.
csaw: a Bioconductor package for differential binding analysis of ChIP-seq data using sliding windows.
Nucleic Acids Res
; 44(5): e45, 2016 Mar 18.
Artigo
em Inglês
| MEDLINE | ID: mdl-26578583
18.
De novo detection of differentially bound regions for ChIP-seq data using peaks and windows: controlling error rates correctly.
Nucleic Acids Res
; 42(11): e95, 2014 Jun.
Artigo
em Inglês
| MEDLINE | ID: mdl-24852250
19.
diffHic: a Bioconductor package to detect differential genomic interactions in Hi-C data.
BMC Bioinformatics
; 16: 258, 2015 Aug 19.
Artigo
em Inglês
| MEDLINE | ID: mdl-26283514
20.
Systemic inflammatory response syndrome triggered by blood-borne pathogens induces prolonged dendritic cell paralysis and immunosuppression.
Cell Rep
; 43(2): 113754, 2024 Feb 27.
Artigo
em Inglês
| MEDLINE | ID: mdl-38354086