Detalhe da pesquisa
1.
Assessing computational predictions of antimicrobial resistance phenotypes from microbial genomes.
Brief Bioinform
; 25(3)2024 Mar 27.
Artigo
em Inglês
| MEDLINE | ID: mdl-38706320
2.
Rapid and accurate identification of ribosomal RNA sequences via deep learning.
Nucleic Acids Res
; 50(10): e60, 2022 06 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-35188571
3.
Evaluating assembly and variant calling software for strain-resolved analysis of large DNA viruses.
Brief Bioinform
; 22(3)2021 05 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-34020538
4.
Functional overlap of the Arabidopsis leaf and root microbiota.
Nature
; 528(7582): 364-9, 2015 Dec 17.
Artigo
em Inglês
| MEDLINE | ID: mdl-26633631
5.
DiTaxa: nucleotide-pair encoding of 16S rRNA for host phenotype and biomarker detection.
Bioinformatics
; 35(14): 2498-2500, 2019 07 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-30500871
6.
Transcriptome-wide analysis uncovers the targets of the RNA-binding protein MSI2 and effects of MSI2's RNA-binding activity on IL-6 signaling.
J Biol Chem
; 293(40): 15359-15369, 2018 10 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-30126842
7.
EDEN: evolutionary dynamics within environments.
Bioinformatics
; 33(20): 3292-3295, 2017 Oct 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-28637301
8.
Optimized model architectures for deep learning on genomic data.
Commun Biol
; 7(1): 516, 2024 Apr 30.
Artigo
em Inglês
| MEDLINE | ID: mdl-38693292
9.
A self-supervised deep learning method for data-efficient training in genomics.
Commun Biol
; 6(1): 928, 2023 09 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-37696966
10.
Pulsed antibiotic treatments of gnotobiotic mice manifest in complex bacterial community dynamics and resistance effects.
Cell Host Microbe
; 31(6): 1007-1020.e4, 2023 06 14.
Artigo
em Inglês
| MEDLINE | ID: mdl-37279755
11.
Strain Identification and Quantitative Analysis in Microbial Communities.
J Mol Biol
; 434(15): 167582, 2022 08 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-35398320
12.
In vitro interaction network of a synthetic gut bacterial community.
ISME J
; 16(4): 1095-1109, 2022 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-34857933
13.
Identification of Natural CRISPR Systems and Targets in the Human Microbiome.
Cell Host Microbe
; 29(1): 94-106.e4, 2021 01 13.
Artigo
em Inglês
| MEDLINE | ID: mdl-33217332
14.
Evolutionary Stabilization of Cooperative Toxin Production through a Bacterium-Plasmid-Phage Interplay.
mBio
; 11(4)2020 07 21.
Artigo
em Inglês
| MEDLINE | ID: mdl-32694140
15.
Reproducible Colonization of Germ-Free Mice With the Oligo-Mouse-Microbiota in Different Animal Facilities.
Front Microbiol
; 10: 2999, 2019.
Artigo
em Inglês
| MEDLINE | ID: mdl-31998276
16.
Author Correction: Optimized model architectures for deep learning on genomic data.
Commun Biol
; 7(1): 625, 2024 May 23.
Artigo
em Inglês
| MEDLINE | ID: mdl-38783006
17.
Publisher Correction: Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life.
Nat Microbiol
; 4(3): 545, 2019 Mar.
Artigo
em Inglês
| MEDLINE | ID: mdl-30723264
18.
Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life.
Nat Microbiol
; 4(3): 470-479, 2019 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-30559407
19.
Characterisation of a stable laboratory co-culture of acidophilic nanoorganisms.
Sci Rep
; 7(1): 3289, 2017 06 12.
Artigo
em Inglês
| MEDLINE | ID: mdl-28607432
20.
Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi.
Nat Commun
; 7: 11362, 2016 05 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-27150427