Detalhe da pesquisa
1.
Size-based expectation maximization for characterizing nucleosome positions and subtypes.
Genome Res
; 2024 Jun 17.
Artigo
em Inglês
| MEDLINE | ID: mdl-38886069
2.
A high-resolution protein architecture of the budding yeast genome.
Nature
; 592(7853): 309-314, 2021 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-33692541
3.
Domain-adaptive neural networks improve cross-species prediction of transcription factor binding.
Genome Res
; 32(3): 512-523, 2022 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-35042722
4.
The Pioneer Transcription Factor FoxA Maintains an Accessible Nucleosome Configuration at Enhancers for Tissue-Specific Gene Activation.
Mol Cell
; 62(1): 79-91, 2016 Apr 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-27058788
5.
An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis.
Genome Res
; 30(3): 472-484, 2020 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-32132109
6.
Differential abilities to engage inaccessible chromatin diversify vertebrate Hox binding patterns.
Development
; 147(22)2020 11 23.
Artigo
em Inglês
| MEDLINE | ID: mdl-33028607
7.
The PfAP2-G2 transcription factor is a critical regulator of gametocyte maturation.
Mol Microbiol
; 115(5): 1005-1024, 2021 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-33368818
8.
S3V2-IDEAS: a package for normalizing, denoising and integrating epigenomic datasets across different cell types.
Bioinformatics
; 37(18): 3011-3013, 2021 09 29.
Artigo
em Inglês
| MEDLINE | ID: mdl-33681991
9.
Assessing relationships between chromatin interactions and regulatory genomic activities using the self-organizing map.
Methods
; 189: 12-21, 2021 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-32652235
10.
Alignment and quantification of ChIP-exo crosslinking patterns reveal the spatial organization of protein-DNA complexes.
Nucleic Acids Res
; 48(20): 11215-11226, 2020 11 18.
Artigo
em Inglês
| MEDLINE | ID: mdl-32747934
11.
Widespread and precise reprogramming of yeast protein-genome interactions in response to heat shock.
Genome Res
; 2018 Feb 14.
Artigo
em Inglês
| MEDLINE | ID: mdl-29444801
12.
Characterizing protein-DNA binding event subtypes in ChIP-exo data.
Bioinformatics
; 35(6): 903-913, 2019 03 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-30165373
13.
Systematic integration of GATA transcription factors and epigenomes via IDEAS paints the regulatory landscape of hematopoietic cells.
IUBMB Life
; 72(1): 27-38, 2020 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-31769130
14.
Direct prediction of regulatory elements from partial data without imputation.
PLoS Comput Biol
; 15(11): e1007399, 2019 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-31682602
15.
miniMDS: 3D structural inference from high-resolution Hi-C data.
Bioinformatics
; 33(14): i261-i266, 2017 Jul 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-28882003
16.
Deconvolving sequence features that discriminate between overlapping regulatory annotations.
PLoS Comput Biol
; 13(10): e1005795, 2017 Oct.
Artigo
em Inglês
| MEDLINE | ID: mdl-29049320
17.
Protein-DNA binding in high-resolution.
Crit Rev Biochem Mol Biol
; 50(4): 269-83, 2015.
Artigo
em Inglês
| MEDLINE | ID: mdl-26038153
18.
An integrated model of multiple-condition ChIP-Seq data reveals predeterminants of Cdx2 binding.
PLoS Comput Biol
; 10(3): e1003501, 2014 Mar.
Artigo
em Inglês
| MEDLINE | ID: mdl-24675637
19.
A multi-parametric flow cytometric assay to analyze DNA-protein interactions.
Nucleic Acids Res
; 41(2): e38, 2013 Jan.
Artigo
em Inglês
| MEDLINE | ID: mdl-23143268
20.
Embryonic stem cell-based mapping of developmental transcriptional programs.
Nat Methods
; 8(12): 1056-8, 2011 Nov 13.
Artigo
em Inglês
| MEDLINE | ID: mdl-22081127