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1.
Environ Monit Assess ; 195(2): 264, 2023 Jan 05.
Artigo em Inglês | MEDLINE | ID: mdl-36600083

RESUMO

Waterborne diseases due to pathogen contamination in water are a serious problem all over the world. Accurate and simultaneous detection of pathogens in water is important to protect public health. In this study, we developed a method to simultaneously detect various pathogenic Escherichia coli by sequencing the amplicons of multiplex PCR. Our newly designed multiplex PCR amplified five genes for pathogenic E. coli (uidA, stx1, stx2, STh gene, and LT gene). Additional two PCR assays (for aggR and eae) were also designed and included in the amplicon sequencing analysis. The same assays were also used for digital PCR (dPCR). Strong positive correlations were observed between the sequence read count and the dPCR results for most of the genes targeted, suggesting that our multiplex PCR-amplicon sequencing approach could provide quantitative information. The method was also successfully applied to monitor the level of pathogenic E. coli in river water and wastewater samples. The approach shown here could be expanded by targeting genes for other pathogens.


Assuntos
Escherichia coli , Reação em Cadeia da Polimerase Multiplex , Microbiologia da Água , Monitoramento Ambiental/métodos , Escherichia coli/genética , Escherichia coli/patogenicidade , Reação em Cadeia da Polimerase Multiplex/métodos
2.
J Water Health ; 19(5): 836-845, 2021 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-34665775

RESUMO

There is a need for developing a simple and easy-to-maintain disinfection technique for sewage treatment for use in developing countries and disaster-affected areas. We propose a novel disinfection technology that inactivates bacteria in wastewater via sunlight irradiation under high salt concentration by mixing with seawater. The disinfection efficiency of the proposed method was quantitatively evaluated and examined using fecal indicator bacteria. When the salinity in wastewater was adjusted to 30 practical salinity units by mixing with seawater, the constant of inactivation irradiation energy Ks (m2/MJ) was 1.6-2.2-fold greater than that without seawater for total coliforms and Escherichia coli. By contrast, although enterococci were inactivated by sunlight irradiation, an increase in salinity did not enhance disinfection. On setting the irradiation energy of sunlight to 5.5 MJ/m2, >99% of the fecal indicator bacteria were inactivated. Finally, we examined the relationship between the attenuation of irradiance and water depth and accordingly proposed a design of a treatment system wherein wastewater and seawater were adequately mixed and passed via a disinfection tank under the natural flow with sunlight irradiation.


Assuntos
Luz Solar , Águas Residuárias , Desinfecção , Água do Mar , Microbiologia da Água
3.
J Environ Manage ; 299: 113550, 2021 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-34438312

RESUMO

Water quality monitoring programs have been widely implemented worldwide to monitor and assess water quality and to understand its trends. However, water quality analysis based on point-source field observations is difficult to perform at large spatial and temporal scales. In this paper, a fully automated Google Earth Engine (GEE) application algorithm was developed to estimate the total suspended solids (TSS) concentration in the Chesapeake Bay based on the Moderate Resolution Imaging Spectroradiometer (MODIS) Terra imagery. Combining long-term archived satellite data (2002-2020) with field observations, the concentrations and spatiotemporal patterns of TSS in the bay water were evaluated. Time series analysis showed a statistically significant decreasing trend in TSS concentration between 2002 and 2020, suggesting that the sediment concentration in the bay has gradually been decreasing over the last two decades. The decreasing trend was observed in 49 out of 60 segments of the bay, implying that substantial progress has been made toward attaining the Chesapeake Bay water quality standards. Based on the monthly TSS analysis, 12 major peak events of TSS were identified in the Chesapeake Bay, which coincided with extreme winter blizzards and summer hurricane events. The GEE application and the results presented herein complement the existing monitoring program in attaining the water quality standards of the bay.


Assuntos
Tempestades Ciclônicas , Imagens de Satélites , Baías , Monitoramento Ambiental , Qualidade da Água
4.
Environ Sci Technol ; 52(9): 5076-5084, 2018 05 01.
Artigo em Inglês | MEDLINE | ID: mdl-29570973

RESUMO

Numerous bacterial genetic markers are available for the molecular detection of human sources of fecal pollution in environmental waters. However, widespread application is hindered by a lack of knowledge regarding geographical stability, limiting implementation to a small number of well-characterized regions. This study investigates the geographic distribution of five human-associated genetic markers (HF183/BFDrev, HF183/BacR287, BacHum-UCD, BacH, and Lachno2) in municipal wastewaters (raw and treated) from 29 urban and rural wastewater treatment plants (750-4 400 000 population equivalents) from 13 countries spanning six continents. In addition, genetic markers were tested against 280 human and nonhuman fecal samples from domesticated, agricultural and wild animal sources. Findings revealed that all genetic markers are present in consistently high concentrations in raw (median log10 7.2-8.0 marker equivalents (ME) 100 mL-1) and biologically treated wastewater samples (median log10 4.6-6.0 ME 100 mL-1) regardless of location and population. The false positive rates of the various markers in nonhuman fecal samples ranged from 5% to 47%. Results suggest that several genetic markers have considerable potential for measuring human-associated contamination in polluted environmental waters. This will be helpful in water quality monitoring, pollution modeling and health risk assessment (as demonstrated by QMRAcatch) to guide target-oriented water safety management across the globe.


Assuntos
Águas Residuárias , Poluição da Água , Animais , Monitoramento Ambiental , Fezes , Marcadores Genéticos , Humanos , Microbiologia da Água
5.
Appl Environ Microbiol ; 83(9)2017 05 01.
Artigo em Inglês | MEDLINE | ID: mdl-28213546

RESUMO

Sewage samples have been investigated to study the norovirus concentrations in sewage or the genotypes of noroviruses circulating in human populations. However, the statistical relationship between the concentration of the virus and the number of infected individuals and the clinical importance of genotypes or strains detected in sewage are unclear. In this study, we carried out both environmental and clinical surveillance of noroviruses for 3 years, 2013 to 2016. We performed cross-correlation analysis of the concentrations of norovirus GI or GII in sewage samples collected weekly and the reported number of gastroenteritis cases. Norovirus genotypes in sewage were also analyzed by pyrosequencing and compared with those identified in stool samples. The cross-correlation analysis found the peak coefficient (R = 0.51) at a lag of zero, indicating that the variation in the GII concentration, expressed as the log10 number of copies per milliliter, was coincident with that in the gastroenteritis cases. A total of 15 norovirus genotypes and up to 8 genotypes per sample were detected in sewage, which included all of the 13 genotypes identified in the stool samples except 2. GII.4 was most frequently detected in both sample types, followed by GII.17. Phylogenetic analysis revealed that a strain belonging to the GII.17 Kawasaki 2014 lineage had been introduced into the study area in the 2012-2013 season. An increase in GI.3 cases was observed in the 2015-2016 season, and sewage monitoring identified the presence of GI.3 in the previous season (2014-2015). Our results demonstrated that monitoring of noroviruses in sewage is useful for sensitive detection of epidemic variants in human populations.IMPORTANCE We obtained statistical evidence of the relationship between the variation in the norovirus GII concentration in sewage and that of gastroenteritis cases during the 3-year study period. Sewage sample analysis by a pyrosequencing approach enabled us to understand the temporal variation in the norovirus genotypes circulating in human populations. We found that a strain closely related to the GII.17 Kawasaki 2014 lineage had been introduced into the study area at least 1 year before its appearance and identification in clinical cases. A similar pattern was observed for GI.3; cases were reported in the 2015-2016 season, and closely related strains were found in sewage in the previous season. Our observation indicates that monitoring of noroviruses in sewage is useful for the rapid detection of an epidemic and is also sensitive enough to study the molecular epidemiology of noroviruses. Applying this approach to other enteric pathogens in sewage will enhance our understanding of their ecology.


Assuntos
Infecções por Caliciviridae/epidemiologia , Infecções por Caliciviridae/virologia , Monitoramento Ambiental , Genótipo , Norovirus/classificação , Norovirus/isolamento & purificação , Esgotos/virologia , Epidemias , Gastroenterite/epidemiologia , Gastroenterite/virologia , Humanos , Norovirus/genética , Carga Viral
6.
Environ Monit Assess ; 189(8): 382, 2017 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-28685372

RESUMO

Human activities during recent decades have led to increased degradation of the river water environment in South Asia. This degradation has led to concerns for the populations of the major cities of Nepal, including those of the Kathmandu Valley. The deterioration of the rivers in the valley is directly linked to the prevalence of poor sanitary conditions, as well as the presence of industries that discharge their effluents into the river. This study aims to investigate the water quality aspect for the aquatic ecosystems and recreation of the major rivers in the Kathmandu Valley using the Canadian Council of Ministers of the Environment water quality index (CCME WQI). Ten physicochemical parameters were used to determine the CCME WQI at 20 different sampling locations. Analysis of the data indicated that the water quality in rural areas ranges from excellent to good, whereas in denser settlements and core urban areas, the water quality is poor. The study results are expected to provide policy-makers with valuable information related to the use of river water by local people in the study area.


Assuntos
Monitoramento Ambiental/métodos , Modelos Teóricos , Poluição da Água/estatística & dados numéricos , Ásia , Canadá , Cidades , Ecossistema , Humanos , Nepal , Recreação , Rios/química , Poluentes da Água/análise , Poluentes da Água/normas , Qualidade da Água/normas
7.
Environ Sci Technol ; 50(11): 5945-52, 2016 06 07.
Artigo em Inglês | MEDLINE | ID: mdl-27154208

RESUMO

Quantitative microbial risk assessment (QMRA) is a powerful decision analytics tool, yet it faces challenges when modeling health risks for the indoor environment. One limitation is uncertainty in fomite recovery for evaluating the efficiency of decontamination. Addressing this data gap has become more important as a result of response and recovery from a potential malicious pathogen release. To develop more accurate QMRA models, recovery efficiency from non-porous fomites (aluminum, ceramic, glass, plastic, steel, and wood laminate) was investigated. Fomite material, surface area (10, 100, and 900 cm(2)), recovery tool (swabs and wipes), initial concentration on the fomites and eluent (polysorbate 80, trypticase soy broth, and beef extract) were evaluated in this research. Recovery was shown to be optimized using polysorbate 80, sampling with wipes, and sampling a surface area of 10-100 cm(2). The QMRA model demonstrated, through a relative risk comparison, the need for recovery efficiency to be used in these models to prevent underestimated risks.


Assuntos
Fômites , Vírus , Bactérias/efeitos dos fármacos , Humanos , Medição de Risco , Manejo de Espécimes
8.
Water Sci Technol ; 73(2): 362-74, 2016.
Artigo em Inglês | MEDLINE | ID: mdl-26819392

RESUMO

River water samples were taken from 32 locations around the basin of Chaophraya River and its four major tributaries in Thailand to investigate resistance ratios of Escherichia coli isolates to eight antibiotic agents of amoxicillin, sulfamethoxazole/trimethoprim, tetracycline, doxytetracycline, ciprofloxacin, levofloxacin, norfloxacin and ofloxacin. Principal component analysis was performed to characterize resistance patterns of the samples. Relevancy of the obtained principal components with urban land use and fecal contamination of the river were examined. The ratio of antibiotic-resistant bacteria is likely to increase when urban land use near the sampling site exceeds a certain ratio. The resistance ratio to fluoroquinolones tends to be high in a highly populated area. Meanwhile, no significant contribution of fecal contamination was found to increase the resistance ratio. These results suggest that an antibiotic-resistance ratio is dependent on conditions of local urbanization rather than the upstream conditions, and that the major sources of antibiotic-resistant bacteria in the Chaophraya River basin are possibly point sources located in the urban area which contains a high ratio of resistant bacteria.


Assuntos
Farmacorresistência Bacteriana , Escherichia coli/fisiologia , Rios/microbiologia , Urbanização , Microbiologia da Água , Amoxicilina , Antibacterianos , Ciprofloxacina , Resistência Microbiana a Medicamentos , Escherichia coli/isolamento & purificação , Fluoroquinolonas , Testes de Sensibilidade Microbiana , Norfloxacino , Ofloxacino , Tetraciclina , Tailândia
9.
Virus Genes ; 50(1): 129-33, 2015 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-25352228

RESUMO

Two novel G3P[4] rotavirus strains were detected from children with acute diarrhea in Sendai, Japan, identified as a G3-P[4]-I2-R2-C2-M2-A2-N2-T2-E2-H2 genotype constellation by whole-genome sequence analysis. The VP7 gene of the two strains displayed the highest nucleotide sequence identity (91 %) and showed a close genetic relationship (99 % bootstrap value) to an equine rotavirus reported in India. The other gene segments were related to human group A rotaviruses. This report suggests a possible reassortment event between human and equine rotaviruses.


Assuntos
RNA Viral/genética , Vírus Reordenados/genética , Vírus Reordenados/isolamento & purificação , Infecções por Rotavirus/virologia , Rotavirus/genética , Rotavirus/isolamento & purificação , Animais , Antígenos Virais/genética , Proteínas do Capsídeo/genética , Pré-Escolar , Análise por Conglomerados , Diarreia/epidemiologia , Diarreia/virologia , Feminino , Cavalos , Humanos , Lactente , Japão/epidemiologia , Masculino , Dados de Sequência Molecular , Filogenia , Infecções por Rotavirus/epidemiologia , Análise de Sequência de DNA , Homologia de Sequência de Aminoácidos
10.
Kansenshogaku Zasshi ; 89(6): 720-6, 2015 Nov.
Artigo em Japonês | MEDLINE | ID: mdl-26821520

RESUMO

Currently in Japan, the only approved influenza vaccine is the inactivated vaccine which is injected subcutaneously. On the other hand, there is a live vaccine available elsewhere in the world. Flumist, an intranasal influenza live vaccine which contains four strains of infectious viruses, has been used in the United States for more than 10 years; the vaccine has been found effective in clinical trials, while it has some limitations such as those on subjects for the administration, strict storage conditions, relatively short expiration date etc. It is not yet approved in Japan, but available through personal import by some medical institutions, and prescribed based on the decision of the doctor. However, in Japan, there is no checking system whether the vaccine contains appropriate amounts of infectious viruses or not. In the present study, we purchased 2013-14 and 2014-15 years' lots of Flumist from a parallel importer and measured the amount of infectious viruses of each component of them using the focus assay. Consequently, for type A influenza viruses, the titers of both of H1N1pdm09 and H3N2 viruses in the 2013-14's lot were 1/30 of the lower limit of those shown in the package insert and 1/10 in 2014-15's lot, while those of type B viruses, both of B/Massachusetts and B/Brisbane viruses marginally cleared the lower limit. The digital PCR analysis showed that the absolute genome copy numbers of type A viruses were 1/10 of those of type B viruses. The relatively higher titer of B/Massachusetts also gradually decreased over time during its storage at 4°C and finally reached the lower limit at about one week before the expiration date. In case it is approved officially in the future to be used in Japan, some studies will be required to elucidate the minimum viral titers of the components necessary for effective live vaccine. In addition, there should be a system to check the titer during the distribution process in Japan.


Assuntos
Vírus da Influenza A/imunologia , Vírus da Influenza B/imunologia , Vacinas contra Influenza/imunologia , Carga Viral , Animais , Humanos , Vírus da Influenza A/genética , Vacinas contra Influenza/administração & dosagem , Vacinas contra Influenza/análise , Influenza Humana/imunologia , Japão , Camundongos , Vacinas Atenuadas/imunologia
11.
Virus Genes ; 45(2): 207-17, 2012 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-22743820

RESUMO

Despite the vast distribution and expansive diversity of enteroviruses reported globally, indicators defining a complete view of the epidemiology of enteroviruses in tropical countries such as the Philippines are yet to be established. Detection of enteroviruses in the environment has been one of the markers of circulating viruses in a community. This study aimed to bridge the gap in the epidemiology of enteroviruses in the Philippines by providing an overview of the occurrence of enteroviruses in both urban and rural rivers. Molecular detection directed at the VP1 region of the enterovirus genome was performed on 44 grab river water samples collected from April to December 2009. The majority of the enterovirus serotypes detected were clustered with human enterovirus C species (HEV-C; 21/42), followed by HEV-B (12/42) and HEV-A (9/42). Porcine enterovirus 9 was also found in 12 out of 44 water samples. Phylogenetic analysis indicated that the viruses detected were closely related, if not all forming a monophyletic clade, with those enteroviruses detected previously from acute flaccid paralysis cases in the country. The clustering of environmental and human enterovirus strains implies that the circulation of these strains were associated with river contamination. This study gives further evidence of the environmental persistence of enteroviruses once they are shed in feces and likewise, provides additional data which may help in understanding the epidemiology of enteroviruses in humans, highlighting the need for more studies on the potential public health risks linked with enteroviruses found in the environment and their eventual clinical consequences in the country.


Assuntos
Enterovirus/classificação , Enterovirus/genética , Rios/virologia , Análise por Conglomerados , Enterovirus/isolamento & purificação , Variação Genética , Genótipo , Humanos , Dados de Sequência Molecular , Filipinas , Filogenia , RNA Viral/genética , População Rural , Análise de Sequência de DNA , População Urbana
12.
Sci Total Environ ; 836: 155569, 2022 Aug 25.
Artigo em Inglês | MEDLINE | ID: mdl-35490818

RESUMO

Climate change and anthropogenic activities are affecting the hydrological conditions of rivers and may have altered nutrient and suspended sediments released into coastal seas. However, testing this hypothesis is difficult, confounded by the lack of observational data and the unavailability of globally accepted suspended sediment concentration (SSC) algorithms. Here, we analyzed the trends in SSC (2000-2020) at the mouths of 10 major Asian rivers using 10 available satellite-SSC algorithms. We identified spatially distinct trends, with SSC decreasing at the mouths of the Yellow, Pearl, and Indus rivers, and increasing trends at the mouths of the Narmada and Ganges-Brahmaputra rivers, while there were no significant trends at the mouths of the remaining rivers. River discharge, dams, and land use changes in basins individually did not suffice, but reproduced the observed SSC trends when used together. Our results imply that anthropogenic activities threaten the marine ecosystem more than climate forcing on Asian coasts.


Assuntos
Estuários , Sedimentos Geológicos , Ecossistema , Monitoramento Ambiental , Hidrologia , Rios
13.
BMC Biotechnol ; 11: 123, 2011 Dec 16.
Artigo em Inglês | MEDLINE | ID: mdl-22176631

RESUMO

BACKGROUND: Water contamination with human enteric viruses has posed human health risks all over the world. Reasonable and facile methodologies for recovering and quantifying infectious enteric viruses in environmental samples are needed to address the issues of waterborne viral infectious diseases. In this study, a bacterial protein that has a binding capability with several enteric viruses is discovered, and its binding characteristics were investigated for utilizing it as a viral adsorbent in virus recovery and detection technologies. RESULTS: A gene of an enteric virus-binding protein (EVBP), derived from a monomer of a bacterial chaperon protein GroEL, was successfully acquired from a genomic DNA library of activated sludge microorganisms with nested PCR. Equilibrium dissociation constants between EVBP and norovirus-like particles (NoVLPs) of genotypes GI.7 and GII.4, estimated with quartz crystal microbalance method, were 240 and 210 nM, respectively. These values of equilibrium dissociation constant imply that the binding affinity between EVBP and NoVLPs is 1 to 3-log weaker than that in general antigen-antibody interactions, but about 2-log stronger than that in weak specific interactions of proteins with cations and organic polymers. The adsorptions of EVBP to norovirus, group A rotavirus and poliovirus type 1 were found to be significant in enzyme-linked immunosorbent assay. Meanwhile, the binding of native GroEL tetradecamer to viral particles was weaker than that of EVBP, presumably because of a steric hindrance. The small molecule of EVBP could have an advantage in the access to the surface of viral particles with rugged structure. CONCLUSIONS: EVBP that has a broad binding spectrum to enteric viruses was newly discovered. The broad binding characteristic of EVBP would allow us to utilize it as a novel adsorbent for detecting diverse enteric viruses in clinical and environmental samples.


Assuntos
Proteínas de Bactérias/metabolismo , Norovirus/isolamento & purificação , Poliovirus/isolamento & purificação , Rotavirus/isolamento & purificação , Vírion/metabolismo , Poluentes da Água/isolamento & purificação , Adsorção , Proteínas de Bactérias/genética , Chaperonina 60/genética , Ensaio de Imunoadsorção Enzimática , Biblioteca Gênica , Norovirus/metabolismo , Poliovirus/metabolismo , Ligação Proteica , Rotavirus/metabolismo , Esgotos/microbiologia , Poluentes da Água/metabolismo
14.
Appl Environ Microbiol ; 77(12): 3975-81, 2011 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-21515729

RESUMO

Nine approaches to recover viral RNA from environmental silty sediments were newly developed and compared to quantify RNA viruses in sediments using molecular methods. Four of the nine approaches employed direct procedures for extracting RNA from sediments (direct methods), and the remaining five approaches used indirect methods wherein viral particles were recovered before RNA extraction. A direct method using an SDS buffer with EDTA to lyse viral capsids in sediments, phenol-chloroform-isoamyl alcohol to extract RNA, isopropanol to concentrate RNA, and magnetic beads to purify RNA resulted in the highest rate of recovery (geometric mean of 11%, with a geometric standard deviation of 0.02; n = 7) of poliovirus 1 (PV1) inoculated in an environmental sediment sample. The direct method exhibiting the highest rate of PV1 recovery was applied to environmental sediment samples. One hundred eight sediment samples were collected from the Takagi River, Miyagi, Japan, and its estuary from November 2007 to April 2009, and the genomic RNAs of enterovirus and human norovirus in these samples were quantified by reverse transcription (RT)-quantitative PCR (qPCR). The human norovirus genome was detected in one sample collected at the bay, although its concentration was below the quantification limit. Meanwhile, the enterovirus genome was detected in two samples at the river mouth and river at concentrations of 8.6 × 10(2) and 2.4 × 10(2) copies/g (wet weight), respectively. This is the first report to obtain quantitative data for a human pathogenic virus in a river and in estuarine sediments using RT-qPCR.


Assuntos
Genoma Viral , Sedimentos Geológicos/virologia , Vírus de RNA/isolamento & purificação , RNA Viral/isolamento & purificação , Virologia/métodos , Humanos , Japão , Vírus de RNA/genética , RNA Viral/genética , Carga Viral
15.
J Phys Chem A ; 115(21): 5371-9, 2011 Jun 02.
Artigo em Inglês | MEDLINE | ID: mdl-21561126

RESUMO

The kinetics of ligand exchange between ferric citrate and desferrioxamine B (DFB) was investigated at pH 8.0 and high citrate/Fe molar ratios (500-5000) with particular attention given to understanding the precise mechanism of ligand exchange. Ferric citrate complexes present in a test solution and therefore involved in the reaction with the incoming ligand (DFB) were initially examined by evaluating ferric citrate speciation on the basis of published thermodynamic constants. The speciation analysis indicated that mononuclear (mono- and dicitrate) ferric complexes are the major species responsible for the ligand exchange with DFB under the conditions examined in the present work. Given the tendency of DFB to adjunctively associate with the ferric citrate complexes, we propose a kinetic model containing the following three mechanisms: (i) direct association of DFB to the ferric dicitrate complex prior to any dissociation of citrate molecules from the Fe center, (ii) adjunctive association of DFB toward ferric monocitrate complex following dissociation of one molecule of citrate from the parent complex, and (iii) complexation of hydrated Fe by DFB after sequential dissociation of two molecules of citrate from the Fe center. Overall rates for the ligand exchange were determined by spectrophotometrically monitoring the formation of ferrioxamine B. Further analysis in quantifying the rate of each mechanism by use of published and determined rate constants of relevant elemental reactions suggested that the first and second mechanisms were significant under our experimental conditions where [Cit] ≫ [DFB] with the relative importance of these two pathways depending on citrate concentration.


Assuntos
Desferroxamina/química , Compostos Férricos/química , Concentração de Íons de Hidrogênio , Cinética , Ligantes , Estrutura Molecular , Termodinâmica
16.
Sci Total Environ ; 731: 139012, 2020 Aug 20.
Artigo em Inglês | MEDLINE | ID: mdl-32388159

RESUMO

Human life comes to a standstill as many countries shut themselves off from the work due to the novel coronavirus disease pandemic (COVID-19) that hit the world severely in the first quarter of 2020. All types of industries, vehicle movement, and people's activity suddenly halted, perhaps for the first time in modern history. For a long time, it has been stated in various literature that the increased industrialization and anthropogenic activities in the last two decades polluted the atmosphere, hydrosphere, and biosphere. Since the industries and people's activities have been shut off for a month or more in many parts of the world, it is expected to show some improvement in the prevailing conditions in the aforementioned spheres of environment. Here, with the help of remote sensing images, this work quantitatively demonstrated the improvement in surface water quality in terms of suspended particulate matter (SPM) in the Vembanad Lake, the longest freshwater lake in India. The SPM estimated based on established turbidity algorithm from Landsat-8 OLI images showed that the SPM concentration during the lockdown period decreased by 15.9% on average (range: -10.3% to 36.4%, up to 8 mg/l decrease) compared with the pre-lockdown period. Time series analysis of satellite image collections (April 2013 - April 2020) showed that the SPM quantified for April 2020 is the lowest for 11 out of 20 zones of the Vembanad lake. When compared with preceding years, the percentage decrease in SPM for April 2020 is up to 34% from the previous minima.


Assuntos
Betacoronavirus , Infecções por Coronavirus , Lagos , Pandemias , Pneumonia Viral , Qualidade da Água , COVID-19 , Monitoramento Ambiental , Humanos , Índia , SARS-CoV-2
17.
J Biosci Bioeng ; 130(1): 76-81, 2020 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-32147250

RESUMO

The quantification of pathogens is important for assessing water safety and preventing disease outbreaks. Culture-independent approaches, such as quantitative PCR (qPCR) and digital PCR (dPCR), are useful techniques for quantifying pathogens in water samples. However, since pathogens are usually present at low concentrations in water, it is necessary to concentrate microbial cells before extracting their DNA. Many existing microbial concentration methods are inefficient or take a long time to perform. In this study, we applied a coagulation and foam separation method to concentrate environmental water samples of between 1000 and 5000 mL to 100 µL of DNA (i.e., a 1-5 × 104-fold concentration). The concentration process took <1 h. The DNA samples were then used to quantify various target pathogens using dPCR. One gene, the Shiga toxin gene (stx2) of Shiga toxin-producing Escherichia coli, was detected at 32 copies/100 mL in a river water sample. The coagulation and foam concentration method followed by dPCR reported herein is a fast, sensitive, and reliable method to quantify pathogen genes in environmental water samples.


Assuntos
Água Doce/microbiologia , Reação em Cadeia da Polimerase/métodos , Água Doce/química , Reação em Cadeia da Polimerase/instrumentação , Sensibilidade e Especificidade , Toxina Shiga/genética , Toxina Shiga/metabolismo , Escherichia coli Shiga Toxigênica/genética , Escherichia coli Shiga Toxigênica/isolamento & purificação , Escherichia coli Shiga Toxigênica/metabolismo
18.
Infect Genet Evol ; 85: 104465, 2020 11.
Artigo em Inglês | MEDLINE | ID: mdl-32687980

RESUMO

Rotaviruses are the major cause of severe acute diarrhea in infants and young children. Rotaviruses exhibit zoonosis and thereby infect both humans and animals. Viruses detected in urban rivers possibly reflect the presence of circulating viruses in the catchment. The present study investigates the genetic diversity of species A rotaviruses detected from river water and stool of hospitalized children with acute diarrhea in Tacloban City, the Philippines. Species A rotaviruses were detected by real-time RT-PCR and their genotypes were identified by multiplex PCR and sequencing of partial regions of VP7 and VP4. Rotaviruses were detected in 85.7% (30/35) of the river water samples and 62.7% (151/241) of the clinical samples. Genotypes of VP7 in the river water samples were G1, G2, G3, G4, G5, and G9, and those of VP4 were P[3], P[4], P[6], P[8], and P[13]. Genotypes of viruses from the clinical samples were G2P[4], G1P[8], G3P[8], G4P[6], G5P[6], and G9P[8]. Among those, G2P[4] in clinical samples (77.9%, 81/104) and P[4] of VP4 in river water samples (67.5%, 56/83)) were the most frequently detected rotavirus genotypes. However, G5 was the more frequently detected than G2 in the river water samples (42% vs. 13%) which may be originated from porcine rotavirus. Sequence analyses of eleven gene segments revealed one G5P[6] and two G4P[6] rotaviruses in the clinical samples, wherein, several gene segments were closely related to porcine rotaviruses. The constellation of these rotavirus genes suggests the emergence of reassortment between human and porcine rotavirus due to interspecies transmission. Although two commercial rotavirus vaccines are available now, these vaccines are designed to confer immunity against the major human rotaviruses. Constant monitoring of viral variety in populated areas where humans and domestic animals live in close proximity provides vital information related to the diversity of rotaviruses in a human population.


Assuntos
Variação Genética , Infecções por Rotavirus/epidemiologia , Infecções por Rotavirus/virologia , Rotavirus/genética , Animais , Criança Hospitalizada , Pré-Escolar , Fezes/virologia , Genoma Viral , Genótipo , Humanos , Lactente , Recém-Nascido , Tipagem Molecular , Filipinas/epidemiologia , Filogenia , Proteínas dos Retroviridae/genética , Rios/virologia , Rotavirus/classificação , Vacinas contra Rotavirus , Análise de Sequência de DNA , Suínos/virologia
19.
Risk Anal ; 29(3): 355-65, 2009 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-19076326

RESUMO

Quantitative microbial risk assessment was used to predict the likelihood and spatial organization of Mycobacterium tuberculosis (Mtb) transmission in a commercial aircraft. Passenger exposure was predicted via a multizone Markov model in four scenarios: seated or moving infectious passengers and with or without filtration of recirculated cabin air. The traditional exponential (k = 1) and a new exponential (k = 0.0218) dose-response function were used to compute infection risk. Emission variability was included by Monte Carlo simulation. Infection risks were higher nearer and aft of the source; steady state airborne concentration levels were not attained. Expected incidence was low to moderate, with the central 95% ranging from 10(-6) to 10(-1) per 169 passengers in the four scenarios. Emission rates used were low compared to measurements from active TB patients in wards, thus a "superspreader" emitting 44 quanta/h could produce 6.2 cases or more under these scenarios. Use of respiratory protection by the infectious source and/or susceptible passengers reduced infection incidence up to one order of magnitude.


Assuntos
Microbiologia do Ar/normas , Aeronaves , Mycobacterium tuberculosis/fisiologia , Tuberculose/transmissão , Simulação por Computador , Humanos , Método de Monte Carlo , Medição de Risco
20.
Harmful Algae ; 83: 25-33, 2019 03.
Artigo em Inglês | MEDLINE | ID: mdl-31097253

RESUMO

The lectin family is composed of mono- and oligosaccharide binding proteins that could activate specific cellular activities, such as cell-cell attachment and toxin production. In the present study, the effect of the external addition of lectins to culture media containing the freshwater cyanobacterium Microcystis aeruginosa on its metabolic activities, such as iron uptake and toxin production was investigated. Among the three lectins examined in this study (concanavalin A [Con A], wheat germ agglutinin [WGA] and peanut agglutinin [PNA]), PNA substantially increased the accumulated intracellular and extracellular iron content. The binding of PNA and Con A to M. aeruginosa cells was visualized via fluorescence microscopy using a lectin adjunct with fluorescein isothiocyanate, and resulted in carbohydrate and protein accumulation in the cellular capsule. Given that the highest carbohydrate accumulation was seen in the Con A system (where iron accumulation was relatively lower), carbohydrate quality is likely important factor that influences cellular iron accumulation. Since PNA specifically binds to sugars such as galactose and N-acetylgalactosamine, these saccharide species could be important candidates for intracellular and extracellular iron accumulation and transport. Microcystin biosynthesis was stimulated in the presence of PNA and WGA, whereas cellular iron uptake increased only in the presence of PNA. Thus, the iron uptake was not necessarily congruent with the upregulation of microcystin synthesis, which suggested that the positive effect of lectin on iron uptake is probably attributable to the PNA-assisted iron accumulation around the cell surface. Overall, the present study provides insights into the interactions of lectin that influence cellular metabolic activities such as iron uptake, extracellular polymeric substance accumulation, and toxin production.


Assuntos
Microcystis , Matriz Extracelular de Substâncias Poliméricas , Água Doce , Ferro , Lectinas
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