Detalhe da pesquisa
1.
Algorithm for optimized mRNA design improves stability and immunogenicity.
Nature
; 621(7978): 396-403, 2023 Sep.
Artigo
em Inglês
| MEDLINE | ID: mdl-37130545
2.
LazySampling and LinearSampling: fast stochastic sampling of RNA secondary structure with applications to SARS-CoV-2.
Nucleic Acids Res
; 51(2): e7, 2023 01 25.
Artigo
em Inglês
| MEDLINE | ID: mdl-36401871
3.
LinearCoFold and LinearCoPartition: linear-time algorithms for secondary structure prediction of interacting RNA molecules.
Nucleic Acids Res
; 51(18): e94, 2023 10 13.
Artigo
em Inglês
| MEDLINE | ID: mdl-37650626
4.
A riboswitch separated from its ribosome-binding site still regulates translation.
Nucleic Acids Res
; 51(5): 2464-2484, 2023 03 21.
Artigo
em Inglês
| MEDLINE | ID: mdl-36762498
5.
RNA design via structure-aware multifrontier ensemble optimization.
Bioinformatics
; 39(39 Suppl 1): i563-i571, 2023 06 30.
Artigo
em Inglês
| MEDLINE | ID: mdl-37387188
6.
In vivo secondary structural analysis of Influenza A virus genomic RNA.
Cell Mol Life Sci
; 80(5): 136, 2023 May 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-37131079
7.
Nearest neighbor rules for RNA helix folding thermodynamics: improved end effects.
Nucleic Acids Res
; 50(9): 5251-5262, 2022 05 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-35524574
8.
Pre-mRNA splicing factor U2AF2 recognizes distinct conformations of nucleotide variants at the center of the pre-mRNA splice site signal.
Nucleic Acids Res
; 50(9): 5299-5312, 2022 05 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-35524551
9.
LinearTurboFold: Linear-time global prediction of conserved structures for RNA homologs with applications to SARS-CoV-2.
Proc Natl Acad Sci U S A
; 118(52)2021 12 28.
Artigo
em Inglês
| MEDLINE | ID: mdl-34887342
10.
Deep learning models for RNA secondary structure prediction (probably) do not generalize across families.
Bioinformatics
; 38(16): 3892-3899, 2022 08 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-35748706
11.
Analysis of a preQ1-I riboswitch in effector-free and bound states reveals a metabolite-programmed nucleobase-stacking spine that controls gene regulation.
Nucleic Acids Res
; 48(14): 8146-8164, 2020 08 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-32597951
12.
Identification of the determinants of tRNA function and susceptibility to rapid tRNA decay by high-throughput in vivo analysis.
Genes Dev
; 28(15): 1721-32, 2014 Aug 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-25085423
13.
Secondary Structure of Influenza A Virus Genomic Segment 8 RNA Folded in a Cellular Environment.
Int J Mol Sci
; 23(5)2022 Feb 23.
Artigo
em Inglês
| MEDLINE | ID: mdl-35269600
14.
Estimating uncertainty in predicted folding free energy changes of RNA secondary structures.
RNA
; 25(6): 747-754, 2019 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-30952689
15.
LinearPartition: linear-time approximation of RNA folding partition function and base-pairing probabilities.
Bioinformatics
; 36(Suppl_1): i258-i267, 2020 07 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-32657379
16.
Design of highly active double-pseudoknotted ribozymes: a combined computational and experimental study.
Nucleic Acids Res
; 47(1): 29-42, 2019 01 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-30462314
17.
Conservation of location of several specific inhibitory codon pairs in the Saccharomyces sensu stricto yeasts reveals translational selection.
Nucleic Acids Res
; 47(3): 1164-1177, 2019 02 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-30576464
18.
Arginine Forks Are a Widespread Motif to Recognize Phosphate Backbones and Guanine Nucleobases in the RNA Major Groove.
J Am Chem Soc
; 142(47): 19835-19839, 2020 11 25.
Artigo
em Inglês
| MEDLINE | ID: mdl-33170672
19.
Accelerated RNA secondary structure design using preselected sequences for helices and loops.
RNA
; 24(11): 1555-1567, 2018 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-30097542
20.
Analysis of RNA nearest neighbor parameters reveals interdependencies and quantifies the uncertainty in RNA secondary structure prediction.
RNA
; 24(11): 1568-1582, 2018 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-30104207