A comparison of structure, bonding and non-covalent interactions of aryl halide and diarylhalonium halogen-bond donors.

Halogen bonding permeates many areas of chemistry. A wide range of halogen-bond donors including neutral, cationic, monovalent, and hypervalent have been developed and studied. In this work we used density functional theory (DFT), natural bond orbital (NBO) theory, and quantum theory of atoms in molecules (QTAIM) to analyze aryl halogen-bond donors that are neutral, cationic, monovalent and hypervalent and in each series we include the halogens Cl, Br, I, and At. Within this diverse set of halogen-bond donors, we have found trends that relate halogen bond length with the van der Waals radii of the halogen and the non-covalent or partial covalency of the halogen bond. We have also developed a model to calculate ΔG of halogen-bond formation by the linear combination of the % p-orbital character on the halogen and energy of the σ-hole on the halogen-bond donor.

The multifunctional dopamine D2/D3 receptor agonists also possess inhibitory activity against the full-length tau441 protein aggregation.

Neurodegeneration leads to variety of diseases which are linked to aberrant protein or peptide aggregation, as a one possible mechanism. Hence, small drug molecules targeting aggregation are of interest. Tau protein aggregation is one of the biomarkers of neurodegenerative diseases and is a viable drug target. Toward multifunctional inhibitors, we aim to incorporate structural elements in a potential drug in order to preserve dopamine agonist activity, which elevates disease symptoms associated with motor skills, and promote inhibitory activity against aggregation of the full-length tau (2N4R, tau441) protein. In our design, we introduced various moieties (catechol, non-catechol, biphenyl, piperazine, and thiazole) to determine which functional group leads to the greatest aggregation inhibition of tau. In vitro, tau aggregation was induced by heparin and monitored by using fluorescence aggregation assay, transmission electron microscopy and 4,4'-Dianilino-1,1'-binaphthyl-5,5'-disulfonic acid dipotassium salt (Bis-ANS) fluorescence spectroscopy. The catechol containing compounds, D-519 and D-520, prevented aggregation of tau. By contrast, non-catechol and thiazole containing compounds (D-264 and D-636) were poor inhibitors. The Bis-ANS studies revealed that the potent inhibitors bound solvent-exposed hydrophobic sites. Based on the density functional theory calculations on inhibitors tested, the compounds characterized with the high polarity and polarizability were more effective aggregation inhibitors. These findings could lead to the development of small multifunctional drug inhibitors for the treatment of tau-associated neurodegeneration.

Designing and refining Ni(II)diimine catalysts toward the controlled synthesis of electron-deficient conjugated polymers.

Electron-deficient π-conjugated polymers are important for organic electronics, yet the ability to polymerize electron-deficient monomers in a controlled manner is challenging. Here we show that Ni(II)diimine catalysts are well suited for the controlled polymerization of electron-deficient heterocycles. The relative stability of the calculated catalyst-monomer (or catalyst-chain end) complex directly influences the polymerization. When the complex is predicted to be most stable (139.2 kJ/mol), these catalysts display rapid reaction kinetics, leading to relatively low polydispersities (∼1.5), chain lengths that are controlled by monomer:catalyst ratio, controlled monomer consumption up to 60% conversion, linear chain length growth up to 40% conversion, and 'living' chain ends that can be readily extended by adding more monomer. These are desirable features that highlight the importance of catalyst design for the synthesis of new conjugated polymers.

Photoswitching azo compounds in vivo with red light.

The photoisomerization of azobenzenes provides a general means for the photocontrol of molecular structure and function. For applications in vivo, however, the wavelength of irradiation required for trans-to-cis isomerization of azobenzenes is critical since UV and most visible wavelengths are strongly scattered by cells and tissues. We report here that azobenzene compounds in which all four positions ortho to the azo group are substituted with bulky electron-rich substituents can be effectively isomerized with red light (630-660 nm), a wavelength range that is orders of magnitude more penetrating through tissue than other parts of the visible spectrum. When the ortho substituent is chloro, the compounds also exhibit stability to reduction by glutathione, enabling their use in intracellular environments in vivo.

Poly(3-alkyltellurophene)s are solution-processable polyheterocycles.

The synthesis and characterization of a series of poly(3-alkyltellurophene)s are described. Polymers are prepared by both electrochemical and Kumada catalyst transfer polymerization methods. These polymers have reasonably high molecular weights (M(n) = 5.4-11.3 kDa) and can be processed in a manner analogous to that of their lighter atom analogues. All examples exhibit red-shifted optical absorption, as well as solid-state organization, as evidenced by absorption spectroscopy and atomic force microscopy. Overall, the synthesis and characterization of these materials open up a wide range of future studies involving tellurium-based polyheterocycles.

Thermal and photoreductive elimination from the tellurium center of π-conjugated tellurophenes.

This study introduces small molecule tellurophenes that can undergo photoreductive elimination. A tellurophene compound with strong light absorption properties and extended π-conjugation, 2,5-bis[5-(N,N'-dihexylisoindigo)]tellurophene (1), has been synthesized. Halogen oxidative addition to the tellurium center from various halogen sources gives the dibromo- (1Br2) and dichloro- (1Cl2) adducts, leading to a red-shift in the optical absorption properties. In the presence of excess opposing halogen, 1Br2 and 1Cl2 can interconvert, with equilibrium favoring the dichlorotellurophene adduct. Reductive elimination reactions were studied using optical absorption spectroscopy, NMR spectroscopy, thermogravimetric analysis, and matrix-assisted laser desorption/ionization (MALDI) analysis. Thermal reductive elimination from 1Br2 and 1Cl2 occurs in the solid-state to restore 1. Photoreductive elimination occurs under irradiation with green (505 nm) light in solution in the presence of a halogen trap with some decomposition. This is the first example of photoreductive elimination from a mononuclear tellurophene complex.

Synthesis, photophysical characterization, and aerobic redox reactivity of electron-rich tellurorhodamine photocatalysts.

Tellurorhodamine dyes are a class of self-sensitizing chromophores that we have previously shown can photocatalytically oxidize a variety of organic and inorganic compounds with visible light, oxygen, and water. A new series of tellurorhodamine chromophores containing electron donating moieties were synthesized to explore how different electron donating groups affect photophysical properties and catalyst function. The synthesized complexes 1B, 1C, and 1D contain increasingly electron-donating substituents (Me, t-Butyl, OMe) on the xylene ring. 1A, containing an unsubstituted xylene, was synthesized for use as a control. UV-Vis spectroscopy was used to determine the photophysical properties of the dyes and for kinetic and thermodynamic studies. With visible light irradiation all dyes could be oxidized at room temperature to their corresponding telluroxides 2A, 2B, 2C, and 2D, as confirmed by mass spectroscopy. Comparative reduction studies using our previously established silane oxidation reaction showed that decreasing the electron density of the xylene moiety increased the rate of reduction, corresponding to a decrease in the experimental ΔG. 2D has the smallest energy barrier to silane oxidation, and a linear increase in rate with increasing substituent electron withdrawing nature was observed at low temperatures, and non-linearity at high temperatures.

Photocatalytic aerobic oxidation of benzylic alcohols and concomitant hydrogen peroxide production.

The photochemical oxidation of benzylic alcohols using N-hydroxyphthalimide (NHPI) catalyst, with Rose Bengal as a singlet oxygen photosensitizer, and the production of hydrogen peroxide (H2O2) under metal-free conditions is presented. Computational and experimental investigations support 1O2 as the oxidant that converts NHPI to the active radical intermediate phthalimide-N-oxyl (PINO). This is a green alternative to current methods of H2O2 production.

Atomistic band gap engineering in donor-acceptor polymers.

We have synthesized a series of cyclopentadithiophene-benzochalcogenodiazole donor-acceptor (D-A) copolymers, wherein a single atom in the benzochalcogenodiazole unit is varied from sulfur to selenium to tellurium, which allows us to explicitly study sulfur to selenium to tellurium substitution in D-A copolymers for the first time. The synthesis of S- and Se-containing polymers is straightforward; however, Te-containing polymers must be prepared by postpolymerization single atom substitution. All of the polymers have the representative dual-band optical absorption profile, consisting of both a low- and high-energy optical transition. Optical spectroscopy reveals that heavy atom substitution leads to a red-shift in the low-energy transition, while the high-energy band remains relatively constant in energy. The red-shift in the low-energy transition leads to optical band gap values of 1.59, 1.46, and 1.06 eV for the S-, Se-, and Te-containing polymers, respectively. Additionally, the strength of the low-energy band decreases, while the high-energy band remains constant. These trends cannot be explained by the present D and A theory where optical properties are governed exclusively by the strength of D and A units. A series of optical spectroscopy experiments, solvatochromism studies, density functional theory (DFT) calculations, and time-dependent DFT calculations are used to understand these trends. The red-shift in low-energy absorption is likely due to both a decrease in ionization potential and an increase in bond length and decrease in acceptor aromaticity. The loss of intensity of the low-energy band is likely the result of a loss of electronegativity and the acceptor unit's ability to separate charge. Overall, in addition to the established theory that difference in electron density of the D and A units controls the band gap, single atom substitution at key positions can be used to control the band gap of D-A copolymers.

Tellurophenes with delocalized π-systems and their extended valence adducts.

The π-conjugated 2,5-substituted tellurophene compounds 2,5-bis(2-(9,9-dihexylfluorene))tellurophene (1) and 2,5-diphenyltellurophene (3) were synthesized through ring closing reactions of 1,4-substituted butadiyne. The oxidative addition of Br(2) to tellurophene compounds 1 and 3 was studied through absorption spectroscopy, NMR, electrochemistry, X-ray crystallography, and density functional theory (DFT) calculations. When Br(2) adds to the tellurium center the absorption spectrum shifts to a lower energy. From electrochemistry and DFT calculations we show that this is caused by lowering the lowest unoccupied orbital. The highest occupied orbital is also lowered, but to a lesser extent. This shift in absorption spectrum and lowering of the oxidation potential can provide a method to modify tellurophene containing materials. The two-electron oxidative addition is promising for catalyzing energy storage reactions.

Orbital analysis of bonding in diarylhalonium salts and relevance to periodic trends in structure and reactivity.

Diarylhalonium compounds provide new opportunities as reagents and catalysts in the field of organic synthesis. The three center, four electron (3c-4e) bond is a center piece of their reactivity, but structural variation among the diarylhaloniums, and in comparison with other λ3-iodanes, indicates that the model needs refinement for broader applicability. We use a combination of Density Functional Theory (DFT), Natural Bond Orbital (NBO) Theory, and X-ray structure data to correlate bonding and structure for a λ3-iodane and a series of diarylchloronium, bromonium, and iodonium salts, and their isoelectronic diarylchalcogen counterparts. This analysis reveals that the s-orbital on the central halogen atom plays a greater role in the 3c-4e bond than previously considered. Finally, we show that our revised bonding model and associated structures account for both kinetic and thermodynamic reactivity for both acyclic phenyl(mesityl)halonium and cyclic dibenzohalolium salts.

Computational investigation into intramolecular hydrogen bonding controlling the isomer formation and pKa of octahedral nickel(II) proton reduction catalysts.

This work demonstrates the impact of intramolecular hydrogen bonding (H-bonding) on the calculated pKa of octahedral tris-(pyridinethiolato)nickel(II), [Ni(PyS)3]-, proton reduction catalysts. Density Functional Theory (DFT) calculations on a [Ni(PyS)3]- catalyst, and eleven derivatives, demonstrate geometric isomer formation in the protonation step of the catalytic cycle. Through Quantum Theory of Atoms in Molecules (QTAIM), we show that the pKa of each isomer is driven by intramolecular H-bonding of the proton on the pyridyl nitrogen to a sulfur on a neighboring ligand. This work demonstrates that ligand modification via the placement of electron-donating (ED) or electron-withdrawing (EW) groups may have unexpected effects on the catalyst's pKa due to intramolecular H-bonding and isomer formation. These factors need to be considered in computational work. This work suggests the possibility that modification of substituent placement on the ligands to manipulate H-bonding in homogeneous metal catalysts could be explored as a tool to simultaneously target both desired pKa and E° values in small molecule catalysts.

Sensitizing the sensitizer: the synthesis and photophysical study of bodipy-Pt(II)(diimine)(dithiolate) conjugates.

The dyads 3, 4, and 6, combining the Bodipy chromophore with a Pt(bpy)(bdt) (bpy = 2,2'-bipyridine, bdt = 1,2-benzenedithiolate, 3 and 6) or a Pt(bpy)(mnt) (mnt = maleonitriledithiolate, 4) moiety, have been synthesized and studied by UV-vis steady-state absorption, transient absorption, and emission spectroscopies and cyclic voltammetry. Comparison of the absorption spectra and cyclic voltammograms of dyads 3, 4, and 6 and those of their model compounds 1a, 2, 5, and 7 shows that the spectroscopic and electrochemical properties of the dyads are essentially the sum of their constituent chromophores, indicating negligible interaction of the constituent chromophores in the ground state. However, emission studies on 3 and 6 show a complete absence of both Bodipy-based fluorescence and the characteristic luminescence of the Pt(bpy)(bdt) unit. Dyad 4 shows a weak Pt(mnt)-based emission. Transient absorption studies show that excitation of the dyads into the Bodipy-based (1)ππ* excited state is followed by singlet energy transfer (SEnT) to the Pt(dithiolate)-based (1)MMLL'CT (mixed metal-ligand to ligand charge transfer) excited state (τ(SEnT)(3) = 0.6 ps, τ(SEnT)(4) = 0.5 ps, and τ(SEnT)(6) = 1.6 ps), which undergoes rapid intersystem crossing to the (3)MMLL'CT state due to the heavy Pt(II) ion. The (3)MMLL'CT state is then depopulated by triplet energy transfer (TEnT) to the low-lying Bodipy-based (3)ππ* excited state (τ(SEnT)(3) = 8.2 ps, τ(SEnT)(4) = 5 ps, and τ(SEnT)(6) = 160 ps). The transition assignments are supported by TD-DFT calculations. Both energy-transfer processes are shown to proceed via a Dexter electron exchange mechanism. The much longer time constants for dyad 6 relative to 3 are attributed to the significantly poorer coupling and resonance of charge-separated species that are intermediates in the electron exchange process.

Synthesis and characterization of neutral luminescent diphosphine pyrrole- and indole-aldimine copper(I) complexes.

Heteroleptic copper(I) complexes of the types [Cu(N,N)(P,P)] and [Cu(N,O)(P,P)], where (P,P) = phosphine (PPh(3)) or diphosphine (dppb, DPEPHOS, XANTPHOS), (N,N) = pyrrole-2-phenylcarbaldimine, 2PyN: [Cu(2PyN)(PPh(3))(2)] (1), [Cu(2PyN) (dppb)] (2), [Cu(2PyN)(DPEPHOS)] (3), and [Cu(2PyN)(XANTPHOS)] (4), (N,N) = indole-2-phenylcarbaldimine, 2IndN: [Cu(2IndN)(DPEPHOS)] (8), and (N,O) = pyrrole-2-carboxaldehyde, 2PyO: [Cu(2PyO)(DPEPHOS)] (5), [Cu(2PyO)(XANTPHOS)] (6), or (N,O) = indole-2-carboxaldehyde, 2IndO: [Cu(2IndO)(DPEPHOS)] (7), were synthesized and characterized by multinuclear NMR spectroscopy, electronic absorption spectroscopy, fluorescence spectroscopy, and X-ray crystallography (1-3, 5-8). The complexes with aldimine ligands are thermally stable, and sublimation of 2-4 was possible at T = 230-250 °C under vacuum. All complexes exhibit long-lived emission in solution, in the solid state, and in frozen glasses. The excited states have been assigned as mixed intraligand and metal-to-ligand charge transfer (3)(MLCT + π-π*) transitions through analysis of the photophysical properties and DFT calculations on representative examples.

Impact of ligand exchange in hydrogen production from cobaloxime-containing photocatalytic systems.

Ligand exchange on the Co(dmgH)(2)(py)Cl water reduction catalyst was explored under photocatalytic conditions. The photosensitizer fluorescein was connected to the catalyst through the axially coordinated pyridine. While this two-component complex produces H(2) from water under visible light irradiation in the presence of triethanolamine (TEOA), it is less active than a system containing separate fluorescein and [Co(III)(dmgH)(2)(py)Cl] components. NMR and photolysis experiments show that the Co catalyst undergoes pyridine exchange. Interestingly, glyoximate ligand exchange was also observed photocatalytically and by NMR spectroscopy, thereby showing that integrated systems in which the photosensitizer is linked directly to the Co(dmgH)(2)(py)Cl catalyst may not remain intact during H(2) photogeneration. These studies have also given rise to insights into the catalyst decomposition mechanism.

Functionalized resorcinarenes effectively disrupt the aggregation of αA66-80 crystallin peptide related to cataracts.

Cataracts, an eye lens clouding disease, are debilitating and while operable, remain without a cure. αA66-80 crystallin peptide abundant in cataracted eye lenses contributes to aggregation of αA-crystallin protein leading to cataracts. Inspired by the versatility of macrocycles and programmable guest selectivity through discrete functionalizations, we report on three water-soluble ionic resorcinarene receptors (A, B, and C) that disrupt the aggregation of αA66-80 crystallin peptide. A and B each possess four anionic sulfonate groups, while C includes four cationic ammonium groups with four flexible extended benzyl groups. Through multiple non-covalent attractions, these receptors successfully disrupt and reverse the aggregation of αA66-80 crystallin peptide, which was studied through spectroscopic, spectrometric, calorimetric, and imaging techniques. The αA66-80·receptor complexes were also explored using molecular dynamics simulation, and binding energies were calculated. Even though each of the three receptors can bind with the peptide, receptor C was characterized by the highest binding energy and affinity for three different domains of the peptide. In effect, the most efficient inhibitor was a cationic receptor C via extended aromatic interactions. These results highlight the potential of versatile and tunable functionalized resorcinarenes as potential therapeutics to reverse the aggregation of α-crystallin dominant in eye cataracts.

Reductive side of water splitting in artificial photosynthesis: new homogeneous photosystems of great activity and mechanistic insight.

Rhodamine photosensitizers (PSs) substituting S or Se for O in the xanthene ring give turnover numbers (TONs) as high as 9000 for the generation of hydrogen via the reduction of water using [Co(III)(dmgH)(2)(py)Cl] (where dmgH = dimethylglyoximate and py = pyridine) as the catalyst and triethanolamine as the sacrificial electron donor. The turnover frequencies were 0, 1700, and 5500 mol H(2)/mol PS/h for O, S, and Se derivatives, respectively (Φ(H(2)) = 0%, 12.2%, and 32.8%, respectively), which correlates well with relative triplet yields estimated from quantum yields for singlet oxygen generation. Phosphorescence from the excited PS was quenched by the sacrificial electron donor. Fluorescence lifetimes were similar for the O- and S-containing rhodamines (∼2.6 ns) and shorter for the Se analog (∼0.1 ns). These data suggest a reaction pathway involving reductive quenching of the triplet excited state of the PS giving the reduced PS(-) that then transfers an electron to the Co catalyst. The longer-lived triplet state is necessary for effective bimolecular electron transfer. While the cobalt/rhodamine/triethanolamine system gives unprecedented yields of hydrogen for the photoreduction of water, mechanistic insights regarding the overall reaction pathway as well as system degradation offer significant guidance to developing even more stable and efficient photocatalytic systems.

Tellurorhodamine photocatalyzed aerobic oxidation of organo-silanes and phosphines by visible-light.

Tellurorhodamine, 9-mesityl-3,6-bis(dimethylamino)telluroxanthylium hexafluorophosphate (1), photocatalytically oxidizes aromatic and aliphatic silanes and triphenyl phosphine under mild aerobic conditions. Under irradiation with visible light, 1 can react with self-sensitized 1O2 to generate the active telluroxide oxidant (2). Silanes are oxidized to silanols and triphenyl phosphine is oxidized to triphenyl phoshine oxide either using 2, or 1 with aerobic irradiation. Kinetic experiments coupled with a computational study elucidate possible mechanisms of oxidation for both silane and phosphine substrates. First-order rates were observed in the oxidation of triphenyl phosphine and methyldiphenyl silane, indicating a substitution like mechanism for substrate binding to the oxidized tellurium(iv). Additionally, these reactions exhibited a rate-dependence on water. Oxidations were typically run in 50 : 50 water/methanol, however, the absence of water decreased the rates of silane oxidation to a greater degree than triphenyl phosphine oxidation. Parallel results were observed in solvent kinetic isotope experiments using D2O in the solvent mixture. The rates of oxidation were slowed to a greater degree in silane oxidation by 2 (kH/kD = 17.30) than for phosphine (kH/kD = 6.20). Various silanes and triphenyl phosphine were photocatalytically oxidized with 1 (5%) under irradiation with warm white LEDs using atmospheric oxygen as the terminal oxidant.

Reversible intramolecular C-C bond formation/breaking and color switching mediated by a N,C-chelate in (2-ph-py)BMes2 and (5-BMes2-2-ph-py)BMes2.

A diboron compound with both 3-coordinate boron and 4-coordinate boron centers, (5-BMes2-2-ph-py)BMes2 (1) and its monoboron analogue, (2-ph-py)BMes2 (2) have been synthesized. Both compounds are luminescent but have a high sensitivity toward light. UV and ambient light cause both compounds to isomerize to 1a and 2a, respectively, via the formation of a C-C bond between a mesityl and the phenyl group, accompanied by a drastic color change from yellow or colorless to dark olive green or dark blue. The structures of 1a and 2a were established by 2D NMR experiments and geometry optimization by DFT calculations. Both 1a and 2a can thermally reverse back to 1 and 2 via the breaking of a C-C bond, with the activation barrier being 107 and 110 kJ/mol, respectively. The N,C-chelate ligands in 1 and 2 were found to play a key role in promoting this unusual and reversible photo-thermal isomerization process on a tetrahedral boron center. Reactions with oxygen molecules convert 1a and 2a to 5-BMes2-2-[(2-Mes)-ph]-pyridine (1b) and 2-(2-Mes)-ph-pyridine (2b), respectively.

Racemic atropisomeric N,N-chelate ligands for recognizing chiral carboxylates via Zn(II) coordination: structure, fluorescence, and circular dichroism.

Two racemic atropisomeric N,N'-chelate ligands, bis{3,3'-[N-Ph-2-(2'-py)indolyl]} (1) and bis{3,3'-N-4-[N-2-(2'-py)indolyl]phenyl-2-(2'-py)indolyl} (2), have been found to be able to distinguish the enantiomers of Zn((R)-BrMeBu)2 and Zn((S)-BrMeBu)2 where BrMeBu = O2CCH(Br)CHMe2, with a distinct and intense CD spectral response at approximately the 10 microM concentration range. Computational studies established that the (R)-1-Zn((R)-BrMeBu)2 or (S)-1-Zn((S)-BrMeBu)2 diastereomer is more stable than (R)-1-Zn((S)-BrMeBu)2 or (S)-1-Zn((R)-BrMeBu)2. In addition, computational studies showed that the CD spectra of (S)-1-Zn((S)-BrMeBu)2 and (S)-1-Zn((R)-BrMeBu)2 are similar. (1)H NMR spectra confirmed that these two diastereomers exist in solution in about a 2:1 ratio for both complexes of 1 and 2. The distinct CD response of the racemic ligands 1 and 2 toward the chiral zinc(II) carboxylate is therefore attributed to the preferential formation of one diastereomer. The binding modes of the zinc(II) salt with ligands 1 and 2 were established by the crystal structures of the model compounds 1-Zn(tfa)2 and 2-Zn(tfa)2 (tfa = CF3CO2(-)), where the Zn(II) ion is chelated by the two central pyridyl groups in the ligand. Fluorescent titration experiments with various zinc(II) salts showed that the fluorescent spectrum of the atropisomeric ligand displays an anion-dependent change. The zinc(II) binding strength to the N,N'-chelate site of the atropisomeric ligand has been found to play a key role in the selective recognition of different chiral zinc(II) carboxylate derivatives by the racemic atropisomeric ligands.