Detalhe da pesquisa
1.
Using Genome-scale Models to Predict Biological Capabilities.
Cell
; 161(5): 971-987, 2015 May 21.
Artigo
em Inglês
| MEDLINE | ID: mdl-26000478
2.
Wdr5 mediates self-renewal and reprogramming via the embryonic stem cell core transcriptional network.
Cell
; 145(2): 183-97, 2011 Apr 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-21477851
3.
Whole-genome sequences from wild-type and laboratory-evolved strains define the alleleome and establish its hallmarks.
Proc Natl Acad Sci U S A
; 120(15): e2218835120, 2023 04 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-37011218
4.
A curated collection of Klebsiella metabolic models reveals variable substrate usage and gene essentiality.
Genome Res
; 32(5): 1004-1014, 2022 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-35277433
5.
Systems biology approach to functionally assess the Clostridioides difficile pangenome reveals genetic diversity with discriminatory power.
Proc Natl Acad Sci U S A
; 119(18): e2119396119, 2022 05 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-35476524
6.
Predicting the primary infection source of Escherichia coli bacteremia using virulence-associated genes.
Eur J Clin Microbiol Infect Dis
; 43(4): 641-648, 2024 Apr.
Artigo
em Inglês
| MEDLINE | ID: mdl-38273191
7.
Cerebrospinal fluid and plasma metabolomics of acute endurance exercise.
FASEB J
; 36(7): e22408, 2022 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-35713567
8.
Metabolomic and exposomic biomarkers of risk of future neurodevelopmental delay in human milk.
Pediatr Res
; 93(6): 1710-1720, 2023 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-36109618
9.
Impact of insertion sequences on convergent evolution of Shigella species.
PLoS Genet
; 16(7): e1008931, 2020 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-32644999
10.
High-quality genome-scale metabolic network reconstruction of probiotic bacterium Escherichia coli Nissle 1917.
BMC Bioinformatics
; 23(1): 566, 2022 Dec 30.
Artigo
em Inglês
| MEDLINE | ID: mdl-36585633
11.
Comparative pangenomics: analysis of 12 microbial pathogen pangenomes reveals conserved global structures of genetic and functional diversity.
BMC Genomics
; 23(1): 7, 2022 Jan 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-34983386
12.
Transmission of Klebsiella strains and plasmids within and between grey-headed flying fox colonies.
Environ Microbiol
; 24(9): 4425-4436, 2022 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-35590448
13.
Genome-scale metabolic modeling reveals key features of a minimal gene set.
Mol Syst Biol
; 17(7): e10099, 2021 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-34288418
14.
Computation of condition-dependent proteome allocation reveals variability in the macro and micro nutrient requirements for growth.
PLoS Comput Biol
; 17(6): e1007817, 2021 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-34161321
15.
Cellular responses to reactive oxygen species are predicted from molecular mechanisms.
Proc Natl Acad Sci U S A
; 116(28): 14368-14373, 2019 07 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-31270234
16.
Machine learning with random subspace ensembles identifies antimicrobial resistance determinants from pan-genomes of three pathogens.
PLoS Comput Biol
; 16(3): e1007608, 2020 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-32119670
17.
Thermodynamic favorability and pathway yield as evolutionary tradeoffs in biosynthetic pathway choice.
Proc Natl Acad Sci U S A
; 115(44): 11339-11344, 2018 10 30.
Artigo
em Inglês
| MEDLINE | ID: mdl-30309961
18.
Adaptations of Escherichia coli strains to oxidative stress are reflected in properties of their structural proteomes.
BMC Bioinformatics
; 21(1): 162, 2020 Apr 29.
Artigo
em Inglês
| MEDLINE | ID: mdl-32349661
19.
Distinct Subpopulations of Intravalvular Methicillin-Resistant Staphylococcus aureus with Variable Susceptibility to Daptomycin in Tricuspid Valve Endocarditis.
Antimicrob Agents Chemother
; 64(3)2020 02 21.
Artigo
em Inglês
| MEDLINE | ID: mdl-31932377
20.
High-quality genome-scale metabolic modelling of Pseudomonas putida highlights its broad metabolic capabilities.
Environ Microbiol
; 22(1): 255-269, 2020 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-31657101