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1.
Molecules ; 27(15)2022 Jul 30.
Artigo em Inglês | MEDLINE | ID: mdl-35956842

RESUMO

Vineyard exposure to wildfire smoke can taint grapes and wine. To understand the impact of this taint, it is imperative that the analytical methods used are accurate and precise. This study compared the variance across nine commercial and research laboratories following quantitative analysis of the same set of smoke-tainted wines. In parallel, correlations between the interlaboratory consensus values for smoke-taint markers and sensory analyses of the same smoke-tainted wines were evaluated. For free guaiacol, the mean accuracy was 94 ± 11% in model wine, while the free cresols and 4-methylguaiacol showed a negative bias and/or decreased precision relative to guaiacol. Similar trends were observed in smoke-tainted wines, with the cresols and glycosidically bound markers demonstrating high variance. Collectively, the interlaboratory results show that data from a single laboratory can be used quantitatively to understand smoke-taint. Results from different laboratories, however, should not be directly compared due to the high variance between study participants. Correlations between consensus compositional data and sensory evaluations suggest the risk of perceivable smoke-taint can be predicted from free cresol concentrations, overcoming limitations associated with the occurrence of some volatile phenols, guaiacol in particular, as natural constituents of some grape cultivars and of the oak used for barrel maturation.


Assuntos
Vitis , Compostos Orgânicos Voláteis , Vinho , Consenso , Cresóis/metabolismo , Guaiacol/análise , Humanos , Fenóis/análise , Fumaça/análise , Vitis/metabolismo , Compostos Orgânicos Voláteis/análise , Vinho/análise
2.
Molecules ; 26(15)2021 Jul 27.
Artigo em Inglês | MEDLINE | ID: mdl-34361670

RESUMO

When wine grapes are exposed to smoke, there is a risk that the resulting wines may possess smoky, ashy, or burnt aromas, a wine flaw known as smoke taint. Smoke taint occurs when the volatile phenols (VPs) largely responsible for the aroma of smoke are transformed in grape into a range of glycosides that are imperceptible by smell. The majority of VP-glycosides described to date are disaccharides possessing a reducing ß-d-glucopyranosyl moiety. Here, a two-part experiment was performed to (1) assess the stability of 11 synthesized VP-glycosides towards general acid-catalyzed hydrolysis during aging, and (2) to examine whether yeast strains differed in their capacity to produce free VPs both from these model glycosides as well as from grapes that had been deliberately exposed to smoke. When fortified into both model and real wine matrices at 200 ng/g, all VP-disaccharides were stable over 12 weeks, while (42-50 ng/g) increases in free 4-ethylphenol and p-cresol were detected when these were added to wine as their monoglucosides. Guaiacol and phenol were the most abundantly produced VPs during fermentation, whether originating from natural VP-precursors in smoked-exposed Pinot Noir must, or due to fortification with synthetic VP-glycosides. Significant yeast strain-specific differences in glycolytic activities were observed for phenyl-ß-d-glycopyranoside, with two strains (RC212 and BM45) being unable to hydrolyze this model VP, albeit both were active on the guaiacyl analogue. Thus, differences in Saccharomyces cerevisiae ß-glucosidase activity appear to be influenced by the VP moiety.


Assuntos
Fermentação , Frutas/metabolismo , Glicosídeos/metabolismo , Odorantes/análise , Fenol/metabolismo , Saccharomyces cerevisiae/enzimologia , Fumaça/efeitos adversos , Vitis/metabolismo , Compostos Orgânicos Voláteis/metabolismo , Vinho/análise , Cresóis/metabolismo , Guaiacol/metabolismo , Fenóis/metabolismo , beta-Glucosidase/metabolismo
3.
Planta ; 248(6): 1537-1550, 2018 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-30151661

RESUMO

MAIN CONCLUSION: The exposure of Vitis vinifera L. berries to forest fire smoke changes the concentration of phenylpropanoid metabolites in berries and the resulting wine. The exposure of Vitis vinifera L. berries (i.e., wine grapes) to forest fire smoke can lead to a wine defect known as smoke taint that is characterized by unpleasant "smoky" and "ashy" aromas and flavors. The intensity of smoke taint is associated with the concentration of organoleptic volatile phenols that are produced during the combustion-mediated oxidation of lignocellulosic biomass and subsequently concentrated in berries prior to fermentation. However, these same smoke-derived volatile phenols are also produced via metabolic pathways endogenous to berries. It follows then that an influx of exogenous volatile phenols (i.e., from forest fire smoke) could alter endogenous metabolism associated with volatile phenol synthesis, which occurs via the shikimic acid/phenylpropanoid pathways. The presence of ozone and karrikins in forest fire smoke, as well as changes to stomatal conductance that can occur from exposure to forest fire smoke also have the potential to influence phenylpropanoid metabolism. This study demonstrated changes in phenylpropanoid metabolites in Pinot noir berries and wine from three vineyards following the exposure of Vitis vinifera L. vines to simulated forest fire smoke. This included changes to metabolites associated with mouth feel and color in wine, both of which are important sensorial qualities to wine producers and consumers. The results reported are critical to understanding the chemical changes associated with smoke taint beyond volatile phenols, which in turn, may aid the development of preventative and remedial strategies.


Assuntos
Fenóis/metabolismo , Propanóis/metabolismo , Fumaça , Vitis/metabolismo , Compostos Orgânicos Voláteis/metabolismo , Fermentação , Frutas/química , Frutas/metabolismo , Odorantes/análise , Polifenóis/metabolismo , Paladar , Vitis/química , Incêndios Florestais , Vinho/análise
4.
Phytochem Anal ; 29(5): 507-515, 2018 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-29601658

RESUMO

INTRODUCTION: Cannabis sativa L. (cannabis) is utilised as a therapeutic and recreational drug. With the legalisation of cannabis in many countries and the anticipated regulation of potency that will accompany legalisation, analytical testing facilities will require a broadly applicable, quantitative, high throughput method to meet increased demand. Current analytical methods for the biologically active components of cannabis (phytocannabinoids) suffer from low throughput and/or an incomplete complement of relevant phytocannabinoids. OBJECTIVE: To develop a rapid, quantitative and broadly applicable liquid chromatography-tandem mass spectrometry analytical method for 11 phytocannabinoids in cannabis with acidic and neutral character. METHODOLOGY: Bulk diffusion coefficients were calculated using the Taylor-Aris open tubular method, with four reference compounds used to validate the experimental set-up. Three columns were quantitatively evaluated using van Deemter plots and fit-to-purpose performance metrics. Low (1.2 µL2 ) and standard (3.6 µL2 ) extra-column variance ultra-high pressure liquid chromatography (UPLC) configurations were contrasted. Method performance was demonstrated with methanolic cannabis flower extracts. RESULTS: Bulk diffusion coefficients and van Deemter plots for 11 phytocannabinoids are reported. The developed chromatographic method includes the challenging Δ8 /Δ9 -tetrahydrocannabinol isobars and, at 6.5 min, is faster than existing methods targeting similar panels of biologically active phytocannabinoids. CONCLUSIONS: The bulk diffusion coefficients and van Deemter curves informed the development of a rapid quantitative method and will facilitate potential expansion to include additional compounds, including synthetic cannabinoids. The developed method can be implemented with low or standard extra-column variance UPLC configurations.


Assuntos
Canabinoides/química , Cannabis/química , Cromatografia Líquida/métodos , Compostos Fitoquímicos/química , Espectrometria de Massas em Tandem/métodos
5.
Rapid Commun Mass Spectrom ; 30(13): 1653-61, 2016 07 15.
Artigo em Inglês | MEDLINE | ID: mdl-27321854

RESUMO

RATIONALE: Neonicotinoid pesticides and their metabolites have been indicated as contributing factors in the decline of honey bee colonies. A thorough understanding of neonicotinoid toxicity requires knowledge of their metabolites and environmental breakdown products. This work investigated the rapid degradation of the neonicotinoid nitenpyram in finished drinking water. METHODS: Nitenpyram reaction products were characterized using liquid chromatography/quadrupole time-of-flight mass spectrometry (LC/QTOFMS). A software algorithm that compared degraded and control samples was utilized to facilitate efficient data reduction. Fragmentation pathways for six reaction products and nitenpyram were proposed using predictive software and manual product ion analysis. RESULTS: This study showed that nitenpyram degradation in unpreserved finished drinking water was likely the result of oxidation, hydrolysis and reaction with Cl2 . Structures for six nitenpyram reaction products were proposed that suggest the C9/C11 olefin as the key reactive site. CONCLUSIONS: Similarities between the identified nitenpyram reaction products and imidacloprid metabolites highlight the importance of this study, as the toxicity of neonicotinoids to pollinators has been linked to their metabolites. Based on the proposed reaction mechanisms, the identified nitenpyram reaction products in finished drinking water could also be present in the environment and water treatment facilities. As such, identifying these degradation products will aid in evaluating the environmental impact of neonicotinoid pesticides. Copyright © 2016 John Wiley & Sons, Ltd.


Assuntos
Água Potável , Inseticidas/química , Neonicotinoides/química , Animais , Abelhas , Cromatografia Líquida , Piridinas
6.
Environ Sci Technol ; 48(17): 10264-72, 2014 Sep 02.
Artigo em Inglês | MEDLINE | ID: mdl-25032949

RESUMO

To analyze the naphthenic acid content of environmental waters quickly and efficiently, we have developed a method that employs differential mobility spectrometry (DMS) coupled to mass spectrometry (MS). This technique combines the benefits of infusion-based MS experiments (parallel, on-demand access to individual components) with DMS's ability to provide liquid chromatography-like separations of isobaric and isomeric compounds in a fraction of the time. In this study, we have applied a DMS-MS workflow to the rapid gas-phase separation of naphthenic acids (NAs) within a technical standard and a real-world oil sands process-affected water (OSPW) extract. Among the findings provided by this workflow are the rapid characterization of isomeric NAs (i.e., same molecular formulas) in a complex OSPW sample, the ability to use DMS to isolate individual NA components (including isomeric NAs) for in-depth structural analyses, and a method by which NA analytes, background ions, and dimer species can be characterized by their distinct behaviors in DMS. Overall, the profiles of the NA content of the technical and OSPW samples were consistent with published values for similar samples, such that the benefits of DMS technology do not detract from the workflow's accuracy or quality.


Assuntos
Ácidos Carboxílicos/química , Espectrometria de Massas/métodos , Análise Espectral/métodos , Misturas Complexas/química , Dimerização , Íons , Isomerismo , Óleos/química , Padrões de Referência , Dióxido de Silício , Águas Residuárias/química , Poluentes Químicos da Água/análise
7.
ACS Omega ; 5(10): 5565-5573, 2020 Mar 17.
Artigo em Inglês | MEDLINE | ID: mdl-32201850

RESUMO

Plants are the main sources of many high-value bioactive terpenoids used in the medical, fragrance, and food industries. Increasing demand for these bioactive plants and their derivative products (e.g., cannabis and extracts thereof) requires robust approaches to verify feedstock, identify product adulteration, and ensure product safety. Reported here are single-laboratory validation details for a robust testing method to quantitate select terpenes and terpenoids in dry plant materials and terpenoid-containing vaping liquids (e.g., a derivative product) using high-temperature headspace gas chromatography-mass spectrometry, with glycerol used as a headspace solvent. Validated method recoveries were 75-103%, with excellent repeatability (relative standard deviation (RSD) < 5%) and intermediate precision (RSD < 12%). The use of high-temperature headspace (180 °C) permitted terpene and terpenoid profiles to be monitored at temperatures consistent with vaping conditions.

8.
Pharm Res ; 26(10): 2303-13, 2009 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-19669100

RESUMO

PURPOSE: To study the role of unsaturated fatty acid ester substituents in the autoxidation of polysorbate 80 using quantitative kinetics. METHODS: Oxidation kinetics were monitored at 40 degrees C in aqueous solution by tracking head space oxygen consumption using a fiber optic oxygen sensor with phase shift fluorescence detection. Radical chain initiation was controlled using an azo-initiator and assessed by Hammond's inhibitor approach, allowing oxidizability constants (k(p)/(2k(t))(1/2)) to be isolated. Reaction orders were determined using modified van't Hoff plots and mixed polysorbate micelles. RESULTS: The oxidizability constant of polysorbate 80 ((1.07 +/- 0.19) x 10(-2) M(-1/2) s(-1/2)) was found to be 2.65 times greater than polysorbate 20 ((0.404 +/- 0.080) x 10(-2) M(-1/2) s(-1/2)). The additional reactivity of polysorbate 80 was isolated and was first-order in the unsaturated fatty acid ester substituents, indicating that the bulk of the autoxidative chain propagation is due to these groups. This data, and the observation of a half-order dependence on the azo-initiator, is consistent with the classical autoxidation rate law (-d[O(2)]/dt = k(p)[RH](R(i)/2k (t))(1/2)). CONCLUSIONS: Polysorbate 80 autoxidation follows the classical rate law and is largely dependent on the unsaturated fatty acid ester substituents. Clarification of the substituents' roles will aid formulators in the selection of appropriate polysorbates to minimize oxidative liabilities.


Assuntos
Ácidos Graxos Insaturados/química , Ácidos Graxos Insaturados/fisiologia , Polissorbatos/química , Polissorbatos/metabolismo , Avaliação Pré-Clínica de Medicamentos/métodos , Ésteres , Cinética , Micelas , Modelos Químicos , Oxirredução
9.
J Agric Food Chem ; 67(51): 14137-14142, 2019 Dec 26.
Artigo em Inglês | MEDLINE | ID: mdl-31802665

RESUMO

Smoke-taint is a wine defect that may occur when ripening grape crops absorb volatile phenols (VPs), compounds associated with the negative sensory attributes of smoke-taint, due to exposure of grapes to wildfire smoke. This study examined potential methods to reduce the impact that smoke-exposure has on wine grapes. Specifically, agricultural sprays normally used to protect grapes from fungal pathogens and a spray used to prevent cracking in soft-fleshed fruits were assessed for their capacity to inhibit increases in VP concentrations in wine grapes following on-vine smoke-exposure. The results indicated that an artificial grape cuticle applied 1 week before exposure to simulated forest fire smoke (at 1-2 weeks after veraison) can significantly hinder an increase in VP concentrations in smoke-exposed grapes at commercial maturity. This reduction in VP concentrations may mitigate crop losses experienced globally by the wine industry due to exposure of grapes on-vine (at key phenological stages) to wildfire smoke.


Assuntos
Produção Agrícola/métodos , Frutas/efeitos dos fármacos , Fumaça/efeitos adversos , Vitis/crescimento & desenvolvimento , Vinho/análise , Frutas/química , Frutas/crescimento & desenvolvimento , Frutas/metabolismo , Fenóis/metabolismo , Fumaça/análise , Vitis/química , Vitis/efeitos dos fármacos , Vitis/metabolismo , Incêndios Florestais
10.
J Agric Food Chem ; 66(3): 695-703, 2018 Jan 24.
Artigo em Inglês | MEDLINE | ID: mdl-29244496

RESUMO

Smoke-taint is a wine defect linked to organoleptic volatile phenols (VPs) in Vitis vinifera L. berries that have been exposed to smoke from wildland fires. Herein, the levels of smoke-taint-associated VPs are reported in Cabernet Franc berries from veraison to commercial maturity and in wine after primary fermentation following on-vine exposure to simulated wildland fire smoke. VPs increased after smoke exposure were rapidly stored as acid-labile conjugates, and the levels of both free VPs and conjugated forms remained constant through ripening to commercial maturity. An increase in total VPs after primary fermentation suggested the existence of VP-conjugates other than the acid-labile VP-glycosides already reported. This conclusion was supported with base hydrolysis on the same samples. Relative to published results, the data suggested a multifactorial regional identity for smoke-taint and they inform efforts to produce a predictive model for perceptible smoke-taint in wine based on the chemical composition of smoke-exposed berries.


Assuntos
Frutas/química , Fenóis/química , Fumaça/análise , Vitis/química , Vinho/análise , Fermentação , Frutas/microbiologia , Vitis/crescimento & desenvolvimento , Vitis/microbiologia , Volatilização , Incêndios Florestais , Vinho/microbiologia , Leveduras/metabolismo
11.
Food Chem ; 259: 147-156, 2018 Sep 01.
Artigo em Inglês | MEDLINE | ID: mdl-29680037

RESUMO

The exposure of Vitis vinifera L. vines to smoke from wildland fires can alter the chemical composition of the berries, such that the resulting wine can possess a defect known as smoke-taint. This work constitutes a complete method for the analysis of simple volatile phenol glycosides (VP-glycosides) that can be elevated in berries and wine following smoke exposure. We synthesized 16 model VP-glycosides, four of which are not reported previously, to facilitate method development. Fragmentation analysis using high-resolution accurate-mass spectrometry demonstrated that the glycone and aglycone influenced the fragmentation pattern of VP-glycosides. Diagnostic fragmentation patterns for the synthesized VP-glycosides were applied to identify several VP-glycosides in smoke-exposed berries and wine. The fragmentation pattern of VP-disaccharides should facilitate the characterization of modified glycones. Putative non-VP glycosides elevated in smoke-exposed berries are demonstrated for the first time. In tandem with VP-glycosides, such compounds may contribute to the expression of smoke taint.


Assuntos
Glicosídeos/análise , Vitis/química , Compostos Orgânicos Voláteis/análise , Vinho/análise , Frutas/química , Glicosídeos/química , Glicosilação , Espectrometria de Massas/métodos , Fenóis/análise , Fenóis/química , Fumaça , Compostos Orgânicos Voláteis/metabolismo , Incêndios Florestais
12.
Chem Biol ; 13(1): 23-30, 2006 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-16426968

RESUMO

Hepatitis C virus (HCV) is a global health problem and a leading cause of liver disease. Here, we demonstrate that the replication of HCV replicon RNA in Huh-7 cells is inhibited by a peroxisome proliferator-activated receptor (PPAR) antagonist, 2-chloro-5-nitro-N-(pyridyl)benzamide (BA). Downregulation of PPARgamma with RNA interference approaches had no effect on HCV replication in Huh-7 cells, whereas PPARalpha downregulation inhibited HCV replication. Fluorescence and coherent anti-Stokes Raman scattering (CARS) microscopy demonstrate a clear buildup of lipids upon treatment with BA. These observations are consistent with the misregulation of lipid metabolism, phospholipid secretion, cholesterol catabolism, and triglyceride clearance events associated with the inhibition of PPARalpha. The inhibition of HCV replication by BA may result from disrupting lipidation of host proteins associated with the HCV replication complex or, more generally, by disrupting the membranous web where HCV replicates.


Assuntos
Benzamidas/farmacologia , Hepacivirus/efeitos dos fármacos , Hepacivirus/fisiologia , PPAR alfa/antagonistas & inibidores , Replicação Viral/efeitos dos fármacos , Benzamidas/química , Linhagem Celular Tumoral , Regulação Viral da Expressão Gênica/genética , Humanos , Lipídeos/química , Estrutura Molecular , PPAR alfa/genética , PPAR alfa/metabolismo , RNA Interferente Pequeno/genética
13.
J Agric Food Chem ; 65(38): 8418-8425, 2017 Sep 27.
Artigo em Inglês | MEDLINE | ID: mdl-28849932

RESUMO

Accurate methods for quantitating volatile phenols (i.e., guaiacol, syringol, 4-ethylphenol, etc.) in smoke-exposed Vitis vinifera berries prior to fermentation are needed to predict the likelihood of perceptible smoke taint following vinification. Reported here is a complete, cross-validated analytical workflow to accurately quantitate free and glycosidically bound volatile phenols in smoke-exposed berries using liquid-liquid extraction, acid-mediated hydrolysis, and gas chromatography-tandem mass spectrometry. The reported workflow addresses critical gaps in existing methods for volatile phenols that impact quantitative accuracy, most notably the effect of injection port temperature and the variability in acid-mediated hydrolytic procedures currently used. Addressing these deficiencies will help the wine industry make accurate, informed decisions when producing wines from smoke-exposed berries.


Assuntos
Frutas/química , Fenóis/química , Vitis/química , Compostos Orgânicos Voláteis/química , Fermentação , Cromatografia Gasosa-Espectrometria de Massas , Sensação , Fumaça/análise , Vinho/análise
14.
Anal Chim Acta ; 925: 43-50, 2016 Jun 21.
Artigo em Inglês | MEDLINE | ID: mdl-27188316

RESUMO

An efficient, high throughput and cost-effective direct aqueous injection approach for the analysis of neonicotinoid pesticides and a common metabolite in environmental water has been described here. The method determines eight neonicotinoid pesticides (acetamiprid, clothianidin, dinotefuran, flonicamid, imidacloprid, nitenpyram, thiacloprid, thiamethoxam) and 6-chloronicotinic acid (a common metabolite of the first generation neonicotinoids, acetamiprid, imidacloprid, nitenpyram and thiacloprid) without any sample enrichment/cleanup steps. The method detection limits are 2-8 ng/L for the neonicotinoids and 93 ng/L for 6-chloronicotinic acid. The performance of the QTRAP(®)5500 mass spectrometer was compared against a 4000QTRAP(®), and a QTRAP(®)6500, to provide insights for future method transfer among different generations of instrumentations. Critical mass spectrometric parameters such as collision energy were quite consistent among the three instruments evaluated. However, increased chemical background levels for some target compounds on the more sensitive instruments were observed. The application of differential ion mobility spectrometry combined with tandem mass spectrometry was demonstrated to have great potential in reducing chemical background and/or isobaric interferences inherited in sample matrices. This ISO 17025 accredited method was employed to quantitate neonicotinoids in Ontario stream water samples. Good correlation for analytical results of this direct aqueous injection approach and a previously published solid phase extraction approach warrant high confidence in data quality.

15.
J Chromatogr A ; 1286: 166-74, 2013 Apr 19.
Artigo em Inglês | MEDLINE | ID: mdl-23518264

RESUMO

This study details the development of a routine method for quantitative analysis of oil sands naphthenic acids, which are a complex class of compounds found naturally and as contaminants in oil sands process waters from Alberta's Athabasca region. Expanding beyond classical naphthenic acids (CnH2n-zO2), those compounds conforming to the formula CnH2n-zOx (where 2≥x≤4) were examined in commercial naphthenic acid and environmental water samples. HPLC facilitated a five-fold reduction in ion suppression when compared to the more commonly used flow injection analysis. A comparison of 39 model naphthenic acids revealed significant variability in response factors, demonstrating the necessity of using naphthenic acid mixtures for quantitation, rather than model compounds. It was also demonstrated that naphthenic acidic heterogeneity (commercial and environmental) necessitates establishing a single NA mix as the standard against which all quantitation is performed. The authors present the first ISO17025 accredited method for the analysis of naphthenic acids in water using HPLC high resolution accurate mass time-of-flight mass spectrometry. The method detection limit was 1mg/L total oxy-naphthenic acids (Sigma technical mix).


Assuntos
Ácidos Carboxílicos/análise , Cromatografia Líquida de Alta Pressão/métodos , Espectrometria de Massas/métodos , Poluentes Químicos da Água/análise , Limite de Detecção , Reprodutibilidade dos Testes , Água/química
16.
J Chromatogr A ; 1263: 68-73, 2012 Nov 09.
Artigo em Inglês | MEDLINE | ID: mdl-23021647

RESUMO

A fast and sensitive analytical method was developed for the chlorinated phenols included in the Canadian Drinking Water Guidelines without the need for costly, time-consuming sample extraction and concentration. Sensitivity and specificity were achieved by derivatization with dansyl chloride and detection via liquid chromatography-tandem mass spectrometry. The dansyl-modified analytes displayed method detection limits in the range of 0.01-1.0 µg/L, enabling the direct determination of chlorophenols from well water without sample enrichment. Recoveries (n=4 days) ranged from 91 to 101% and accuracies were between 79 and 116% (n=4). This method significantly increases sample throughput compared to the current EPA method for phenols in finished drinking water.


Assuntos
Cromatografia Líquida de Alta Pressão/métodos , Hidrocarbonetos Clorados/análise , Fenóis/análise , Espectrometria de Massas em Tandem/métodos , Poluentes Químicos da Água/análise , Reprodutibilidade dos Testes
19.
Org Biomol Chem ; 5(15): 2380-9, 2007 Aug 07.
Artigo em Inglês | MEDLINE | ID: mdl-17637957

RESUMO

Raman and coherent anti-Stokes Raman scattering (CARS) microscopies have the potential to aid in detailed longitudinal studies of RNA localization. Here, we evaluate the use of carbon-deuterium and benzonitrile functional group labels as contrast agents for vibrational imaging of hepatitis C virus (HCV) replicon RNA. Dynamic light scattering and atomic force microscopy were used to evaluate the structural consequences of altering HCV subgenomic replicon RNA. Modification with benzonitrile labels caused the replicon RNA tertiary structure to partially unfold. Conversely, deuterium-modified replicon RNA was structurally similar to unmodified replicon RNA. Furthermore, the deuterated replicon RNA provided promising vibrational contrast in Raman imaging experiments. The functional effect of modifying subgenomic HCV replicon RNA was evaluated using the luciferase gene as a genetic reporter of translation. Benzonitrile labeling of the replicon RNA prevented translation in cell-based luciferase assays, while the deuterated replicon RNA retained both translation and replication competency. Thus, while the scattering cross-section for benzonitrile labels was higher, only carbon-deuterium labels proved to be non-perturbative to the function of HCV replicon RNA.


Assuntos
Hepacivirus/genética , Sondas Moleculares/química , RNA Viral/análise , RNA Viral/química , Coloração e Rotulagem/métodos , Fenômenos Biofísicos , Biofísica , Linhagem Celular Tumoral , Meios de Contraste , Genoma Viral/genética , Humanos , Microscopia , Nitrilas/química , Replicon/genética , Análise Espectral Raman , Uridina/genética , Vibração
20.
Biochem Biophys Res Commun ; 354(2): 340-4, 2007 Mar 09.
Artigo em Inglês | MEDLINE | ID: mdl-17239343

RESUMO

Domain recognition software was employed to assess recrystallization-inhibition (RI) activity as an index of antifreeze potential. This represents a key step in the development of a high-throughput analysis for RI activity. Analysis of measurement error indicates an average coefficient of variation for individual crystals of about 8%, which is very small in relation to other sources of variation. Our analysis demonstrates an inverse correlation between AFGP 8 concentration and average crystal size with consistently small, but detectable differences in average crystal size at the edge and centre of the ice wafer. Sensitivity analysis using Monte Carlo re-sampling methods indicate that measuring of 12-15 crystals per field of view are sufficient to obtain accurate estimates of the first two moments (mean and variance) of the crystal size distribution, thereby greatly reducing the time required to assess recrystallization activity. These results suggest that this method has considerable potential for high-throughput analysis of RI activity.


Assuntos
Proteínas Anticongelantes/química , Proteínas Anticongelantes/fisiologia , Software , Animais , Biologia Computacional , Cristalização , Gadiformes/fisiologia , Modelos Moleculares , Estrutura Terciária de Proteína
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