Pesquisa | Biblioteca Virtual em Saúde

1.

Enrichment of colibactin-associated mutational signatures in unexplained colorectal polyposis patients.

Terlouw, Diantha; Boot, Arnoud; Ducarmon, Quinten R; Nooij, Sam; Suerink, Manon; van Leerdam, Monique E; van Egmond, Demi; Tops, Carli M; Zwittink, Romy D; Ruano, Dina; Langers, Alexandra M J; Nielsen, Maartje; van Wezel, Tom; Morreau, Hans.

BMC Cancer ; 24(1): 104, 2024 Jan 18.

Artigo em Inglês | MEDLINE | ID: mdl-38238650

2.

Fecal Microbiota Transplantation Influences Procarcinogenic Escherichia coli in Recipient Recurrent Clostridioides difficile Patients.

Nooij, Sam; Ducarmon, Quinten R; Laros, Jeroen F J; Zwittink, Romy D; Norman, Jason M; Smits, Wiep Klaas; Verspaget, Hein W; Keller, Josbert J; Terveer, Elisabeth M; Kuijper, Ed J.

Gastroenterology ; 161(4): 1218-1228.e5, 2021 10.

Artigo em Inglês | MEDLINE | ID: mdl-34126062

3.

Haem is crucial for medium-dependent metronidazole resistance in clinical isolates of Clostridioides difficile.

Boekhoud, Ilse M; Sidorov, Igor; Nooij, Sam; Harmanus, Céline; Bos-Sanders, Ingrid M J G; Viprey, Virginie; Spittal, William; Clark, Emma; Davies, Kerrie; Freeman, Jane; Kuijper, Ed J; Smits, Wiep Klaas.

J Antimicrob Chemother ; 76(7): 1731-1740, 2021 06 18.

Artigo em Inglês | MEDLINE | ID: mdl-33876817

4.

Genome Detective: an automated system for virus identification from high-throughput sequencing data.

Vilsker, Michael; Moosa, Yumna; Nooij, Sam; Fonseca, Vagner; Ghysens, Yoika; Dumon, Korneel; Pauwels, Raf; Alcantara, Luiz Carlos; Vanden Eynden, Ewout; Vandamme, Anne-Mieke; Deforche, Koen; de Oliveira, Tulio.

Bioinformatics ; 35(5): 871-873, 2019 03 01.

Artigo em Inglês | MEDLINE | ID: mdl-30124794

5.

Reply.

Nooij, Sam; Terveer, Elisabeth M.

Gastroenterology ; 162(3): 994-995, 2022 03.

Artigo em Inglês | MEDLINE | ID: mdl-34863789

6.

Long-term beneficial effect of faecal microbiota transplantation on colonisation of multidrug-resistant bacteria and resistome abundance in patients with recurrent Clostridioides difficile infection.

Nooij, Sam; Vendrik, Karuna E W; Zwittink, Romy D; Ducarmon, Quinten R; Keller, Josbert J; Kuijper, Ed J; Terveer, Elisabeth M.

Genome Med ; 16(1): 37, 2024 Feb 28.

Artigo em Inglês | MEDLINE | ID: mdl-38419010

7.

Fecal Microbiota Transplantation engraftment after budesonide or placebo in patients with active ulcerative colitis using pre-selected donors: a randomized pilot study.

van Lingen, Emilie; Nooij, Sam; Terveer, Elisabeth; Crossette, Emily; Prince, Amanda; Bhattarai, Shakti; Watson, Andrea; Galazzo, Gianluca; Menon, Rajita; Szabady, Rose; Bucci, Vanni; Norman, Jason; van der Woude, Janneke; van der Marel, Sander; Verspaget, Hein; van der Meulen-de Jong, Andrea; Keller, Josbert.

J Crohns Colitis ; 2024 Apr 04.

Artigo em Inglês | MEDLINE | ID: mdl-38572716

8.

Gut colonisation by extended-spectrum ß-lactamase-producing Escherichia coli and its association with the gut microbiome and metabolome in Dutch adults: a matched case-control study.

Ducarmon, Quinten R; Zwittink, Romy D; Willems, Roel P J; Verhoeven, Aswin; Nooij, Sam; van der Klis, Fiona R M; Franz, Eelco; Kool, Jolanda; Giera, Martin; Vandenbroucke-Grauls, Christina M J E; Fuentes, Susana; Kuijper, Ed J.

Lancet Microbe ; 3(6): e443-e451, 2022 06.

Artigo em Inglês | MEDLINE | ID: mdl-35659906

9.

Hospital transmission of borderline oxacillin-resistant Staphylococcus aureus evaluated by whole-genome sequencing.

Konstantinovski, Maria M; Veldkamp, Karin Ellen; Lavrijsen, Adriana P M; Bosch, Thijs; Kraakman, Margriet E M; Nooij, Sam; Claas, Eric C J; Gooskens, Jairo.

J Med Microbiol ; 70(7)2021 Jul.

Artigo em Inglês | MEDLINE | ID: mdl-34269673

10.

Microbiota-associated risk factors for asymptomatic gut colonisation with multi-drug-resistant organisms in a Dutch nursing home.

Ducarmon, Quinten R; Terveer, Elisabeth M; Nooij, Sam; Bloem, Michelle N; Vendrik, Karuna E W; Caljouw, Monique A A; Sanders, Ingrid M J G; van Dorp, Sofie M; Wong, Man C; Zwittink, Romy D; Kuijper, Ed J.

Genome Med ; 13(1): 54, 2021 04 07.

Artigo em Inglês | MEDLINE | ID: mdl-33827686

11.

Periodic screening of donor faeces with a quarantine period to prevent transmission of multidrug-resistant organisms during faecal microbiota transplantation: a retrospective cohort study.

Vendrik, Karuna E W; Terveer, Elisabeth M; Kuijper, Ed J; Nooij, Sam; Boeije-Koppenol, Eline; Sanders, Ingrid M J G; van Lingen, Emilie; Verspaget, Hein W; Berssenbrugge, Eric K L; Keller, Josbert J; van Prehn, Joffrey.

Lancet Infect Dis ; 21(5): 711-721, 2021 05.

Artigo em Inglês | MEDLINE | ID: mdl-33275940

12.

Overview of Virus Metagenomic Classification Methods and Their Biological Applications.

Nooij, Sam; Schmitz, Dennis; Vennema, Harry; Kroneman, Annelies; Koopmans, Marion P G.

Front Microbiol ; 9: 749, 2018.

Artigo em Inglês | MEDLINE | ID: mdl-29740407

13.

A34 Automated profiling of the human virome from raw metagenomic data.

Moosa, Yumna; Vilsker, Michael; Vanden Eyden, Ewout; Fonseca, Vagner; Nooij, Sam; Deforche, Koen; de Oliveira, Tulio.

Virus Evol ; 3(Suppl 1)2017 Mar.

Artigo em Inglês | MEDLINE | ID: mdl-28845264

14.

Genome Detective: an automated system for virus identification from high-throughput sequencing data

Vilsker, Michael; Moosa, Yumna; Nooij, Sam; Fonseca, Vagner; Ghysens, Yoika; Dumon, Korneel; Pauwels, Raf; Alcantara, Luiz Carlos Júnior; Vandamme, Anne-Mieke; Eynden, Ewout Vanden; Deforche, Koen; Oliveira, Tulio de.

Artigo em Inglês | ARCA | ID: arc-29703

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