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1.
Glycobiology ; 28(8): 624-636, 2018 08 01.
Artigo em Inglês | MEDLINE | ID: mdl-29873711

RESUMO

Homologous glycosyltransferases GTA and GTB perform the final step in human ABO(H) blood group A and B antigen synthesis by transferring the sugar moiety from donor UDP-GalNAc/UDP-Gal to the terminal H antigen disaccharide acceptor. Like other GT-A fold family 6 glycosyltransferases, GTA and GTB undergo major conformational changes in two mobile regions, the C-terminal tail and internal loop, to achieve the closed, catalytic state. These changes are known to establish a salt bridge network among conserved active site residues Arg188, Asp211 and Asp302, which move to accommodate a series of discrete donor conformations while promoting loop ordering and formation of the closed enzyme state. However, the individual significance of these residues in linking these processes remains unclear. Here, we report the kinetics and high-resolution structures of GTA/GTB mutants of residues 188 and 302. The structural data support a conserved salt bridge network critical to mobile polypeptide loop organization and stabilization of the catalytically competent donor conformation. Consistent with the X-ray crystal structures, the kinetic data suggest that disruption of this salt bridge network has a destabilizing effect on the transition state, emphasizing the importance of Arg188 and Asp302 in the glycosyltransfer reaction mechanism. The salt bridge network observed in GTA/GTB structures during substrate binding appears to be conserved not only among other Carbohydrate Active EnZyme family 6 glycosyltransferases but also within both retaining and inverting GT-A fold glycosyltransferases. Our findings augment recently published crystal structures, which have identified a correlation between donor substrate conformational changes and mobile loop ordering.


Assuntos
Sistema ABO de Grupos Sanguíneos/química , Glicosiltransferases/química , Sistema ABO de Grupos Sanguíneos/genética , Sistema ABO de Grupos Sanguíneos/metabolismo , Arginina/química , Arginina/metabolismo , Ácido Aspártico/química , Ácido Aspártico/metabolismo , Domínio Catalítico , Cristalografia por Raios X , Glicosiltransferases/genética , Glicosiltransferases/metabolismo , Humanos , Domínios Proteicos
2.
Plant J ; 85(5): 622-33, 2016 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-26935252

RESUMO

Monogalactosyldiacylglycerol (MGDG) and digalactosyldiacylglycerol (DGDG) are the major lipid components of photosynthetic membranes, and hence the most abundant lipids in the biosphere. They are essential for assembly and function of the photosynthetic apparatus. In Arabidopsis, the first step of galactolipid synthesis is catalyzed by MGDG synthase 1 (MGD1), which transfers a galactosyl residue from UDP-galactose to diacylglycerol (DAG). MGD1 is a monotopic protein that is embedded in the inner envelope membrane of chloroplasts. Once produced, MGDG is transferred to the outer envelope membrane, where DGDG synthesis occurs, and to thylakoids. Here we present two crystal structures of MGD1: one unliganded and one complexed with UDP. MGD1 has a long and flexible region (approximately 50 amino acids) that is required for DAG binding. The structures reveal critical features of the MGD1 catalytic mechanism and its membrane binding mode, tested on biomimetic Langmuir monolayers, giving insights into chloroplast membrane biogenesis. The structural plasticity of MGD1, ensuring very rapid capture and utilization of DAG, and its interaction with anionic lipids, possibly driving the construction of lipoproteic clusters, are consistent with the role of this enzyme, not only in expansion of the inner envelope membrane, but also in supplying MGDG to the outer envelope and nascent thylakoid membranes.


Assuntos
Proteínas de Arabidopsis/metabolismo , Arabidopsis/metabolismo , Galactolipídeos/biossíntese , Galactosiltransferases/metabolismo , Tilacoides/metabolismo , Sequência de Aminoácidos , Arabidopsis/enzimologia , Arabidopsis/genética , Proteínas de Arabidopsis/química , Proteínas de Arabidopsis/genética , Biocatálise , Vias Biossintéticas/genética , Domínio Catalítico , Cristalografia por Raios X , Diglicerídeos/química , Diglicerídeos/metabolismo , Eletroforese em Gel de Poliacrilamida , Galactose/química , Galactose/metabolismo , Galactosiltransferases/química , Galactosiltransferases/genética , Membranas Intracelulares/metabolismo , Modelos Moleculares , Mutação , Ligação Proteica , Domínios Proteicos , Estrutura Secundária de Proteína , Espalhamento a Baixo Ângulo , Homologia de Sequência de Aminoácidos , Difosfato de Uridina/química , Difosfato de Uridina/metabolismo , Difração de Raios X
3.
Glycobiology ; 27(10): 966-977, 2017 10 01.
Artigo em Inglês | MEDLINE | ID: mdl-28575295

RESUMO

The human ABO(H) blood group A- and B-synthesizing glycosyltransferases GTA and GTB have been structurally characterized to high resolution in complex with their respective trisaccharide antigen products. These findings are particularly timely and relevant given the dearth of glycosyltransferase structures collected in complex with their saccharide reaction products. GTA and GTB utilize the same acceptor substrates, oligosaccharides terminating with α-l-Fucp-(1→2)-ß-d-Galp-OR (where R is a glycolipid or glycoprotein), but use distinct UDP donor sugars, UDP-N-acetylgalactosamine and UDP-galactose, to generate the blood group A (α-l-Fucp-(1→2)[α-d-GalNAcp-(1→3)]-ß-d-Galp-OR) and blood group B (α-l-Fucp-(1→2)[α-d-Galp-(1→3)]-ß-d-Galp-OR) determinant structures, respectively. Structures of GTA and GTB in complex with their respective trisaccharide products reveal a conflict between the transferred sugar monosaccharide and the ß-phosphate of the UDP donor. Mapping of the binding epitopes by saturation transfer difference NMR measurements yielded data consistent with the X-ray structural results. Taken together these data suggest a mechanism of product release where monosaccharide transfer to the H-antigen acceptor induces active site disorder and ejection of the UDP leaving group prior to trisaccharide egress.


Assuntos
Sistema ABO de Grupos Sanguíneos/metabolismo , Glicosiltransferases/química , Simulação de Acoplamento Molecular , Trissacarídeos/metabolismo , Sistema ABO de Grupos Sanguíneos/química , Sítios de Ligação , Cristalografia por Raios X , Glicosiltransferases/metabolismo , Humanos , Ligação Proteica , Trissacarídeos/química
4.
Glycobiology ; 27(4): 370-380, 2017 04 01.
Artigo em Inglês | MEDLINE | ID: mdl-27979997

RESUMO

The homologous glycosyltransferases α-1,3-N-acetylgalactosaminyltransferase (GTA) and α-1,3-galactosyltransferase (GTB) carry out the final synthetic step of the closely related human ABO(H) blood group A and B antigens. The catalytic mechanism of these model retaining enzymes remains under debate, where Glu303 has been suggested to act as a putative nucleophile in a double displacement mechanism, a local dipole stabilizing the intermediate in an orthogonal associative mechanism or a general base to stabilize the reactive oxocarbenium ion-like intermediate in an SNi-like mechanism. Kinetic analysis of GTA and GTB point mutants E303C, E303D, E303Q and E303A shows that despite the enzymes having nearly identical sequences, the corresponding mutants of GTA/GTB have up to a 13-fold difference in their residual activities relative to wild type. High-resolution single crystal X-ray diffraction studies reveal, surprisingly, that the mutated Cys, Asp and Gln functional groups are no more than 0.8 Å further from the anomeric carbon of donor substrate compared to wild type. However, complicating the analysis is the observation that Glu303 itself plays a critical role in maintaining the stability of a strained "double-turn" in the active site through several hydrogen bonds, and any mutation other than E303Q leads to significantly higher thermal motion or even disorder in the substrate recognition pockets. Thus, there is a remarkable juxtaposition of the mutants E303C and E303D, which retain significant activity despite disrupted active site architecture, with GTB/E303Q, which maintains active site architecture but exhibits zero activity. These findings indicate that nucleophilicity at position 303 is more catalytically valuable than active site stability and highlight the mechanistic elasticity of these enzymes.


Assuntos
Sistema ABO de Grupos Sanguíneos/genética , Antígenos de Grupos Sanguíneos/genética , Galactosiltransferases/genética , Sistema ABO de Grupos Sanguíneos/química , Sistema ABO de Grupos Sanguíneos/imunologia , Sequência de Aminoácidos/genética , Antígenos de Grupos Sanguíneos/química , Catálise , Domínio Catalítico , Cristalografia por Raios X , Galactosiltransferases/química , Humanos , Ligação de Hidrogênio , Cinética , Mutação , Mutação Puntual , Especificidade por Substrato
5.
Chembiochem ; 18(13): 1260-1269, 2017 07 04.
Artigo em Inglês | MEDLINE | ID: mdl-28256109

RESUMO

Donor and acceptor substrate binding to human blood group A and B glycosyltransferases (GTA, GTB) has been studied by a variety of protein NMR experiments. Prior crystallographic studies had shown these enzymes to adopt an open conformation in the absence of substrates. Binding either of the donor substrate UDP-Gal or of UDP induces a semiclosed conformation. In the presence of both donor and acceptor substrates, the enzymes shift towards a closed conformation with ordering of an internal loop and the C-terminal residues, which then completely cover the donor-binding pocket. Chemical-shift titrations of uniformly 2 H,15 N-labeled GTA or GTB with UDP affected about 20 % of all crosspeaks in 1 H,15 N TROSY-HSQC spectra, reflecting substantial plasticity of the enzymes. On the other hand, it is this conformational flexibility that impedes NH backbone assignments. Chemical-shift-perturbation experiments with δ1-[13 C]methyl-Ile-labeled samples revealed two Ile residues-Ile123 at the bottom of the UDP binding pocket, and Ile192 as part of the internal loop-that were significantly disturbed upon stepwise addition of UDP and H-disaccharide, also revealing long-range perturbations. Finally, methyl TROSY-based relaxation dispersion experiments do not reveal micro- to millisecond timescale motions. Although this study reveals substantial conformational plasticity of GTA and GTB, the matter of how binding of substrates shifts the enzymes into catalytically competent states remains enigmatic.


Assuntos
Galactosiltransferases/química , N-Acetilgalactosaminiltransferases/química , Uridina Difosfato Galactose/química , Difosfato de Uridina/química , Sequência de Aminoácidos , Sítios de Ligação , Clonagem Molecular , Escherichia coli/genética , Escherichia coli/metabolismo , Galactosiltransferases/genética , Galactosiltransferases/metabolismo , Expressão Gênica , Humanos , Cinética , Modelos Moleculares , N-Acetilgalactosaminiltransferases/genética , N-Acetilgalactosaminiltransferases/metabolismo , Ressonância Magnética Nuclear Biomolecular , Ligação Proteica , Conformação Proteica em alfa-Hélice , Conformação Proteica em Folha beta , Domínios e Motivos de Interação entre Proteínas , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Alinhamento de Sequência , Especificidade por Substrato , Difosfato de Uridina/metabolismo , Uridina Difosfato Galactose/metabolismo
6.
Plant Physiol ; 171(3): 1879-92, 2016 07.
Artigo em Inglês | MEDLINE | ID: mdl-27208262

RESUMO

At variance with the starch-accumulating plants and most of the glycogen-accumulating cyanobacteria, Cyanobacterium sp. CLg1 synthesizes both glycogen and starch. We now report the selection of a starchless mutant of this cyanobacterium that retains wild-type amounts of glycogen. Unlike other mutants of this type found in plants and cyanobacteria, this mutant proved to be selectively defective for one of the two types of glycogen/starch synthase: GlgA2. This enzyme is phylogenetically related to the previously reported SSIII/SSIV starch synthase that is thought to be involved in starch granule seeding in plants. This suggests that, in addition to the selective polysaccharide debranching demonstrated to be responsible for starch rather than glycogen synthesis, the nature and properties of the elongation enzyme define a novel determinant of starch versus glycogen accumulation. We show that the phylogenies of GlgA2 and of 16S ribosomal RNA display significant congruence. This suggests that this enzyme evolved together with cyanobacteria when they diversified over 2 billion years ago. However, cyanobacteria can be ruled out as direct progenitors of the SSIII/SSIV ancestral gene found in Archaeplastida. Hence, both cyanobacteria and plants recruited similar enzymes independently to perform analogous tasks, further emphasizing the importance of convergent evolution in the appearance of starch from a preexisting glycogen metabolism network.


Assuntos
Proteínas de Bactérias/metabolismo , Evolução Biológica , Cianobactérias/metabolismo , Glicogênio/metabolismo , Sintase do Amido/metabolismo , Proteínas de Bactérias/genética , Cianobactérias/fisiologia , Escherichia coli/genética , Escherichia coli/metabolismo , Genoma Bacteriano , Glicogênio/química , Glicogênio Sintase/genética , Glicogênio Sintase/metabolismo , Mutação , Filogenia , Polissacarídeos Bacterianos/genética , Polissacarídeos Bacterianos/metabolismo , Amido/metabolismo , Sintase do Amido/genética , Synechocystis/genética , Synechocystis/metabolismo
7.
J Exp Bot ; 68(5): 931-941, 2017 02 01.
Artigo em Inglês | MEDLINE | ID: mdl-28199682

RESUMO

Amylose synthesis is strictly associated with activity of granule-bound starch synthase (GBSS) enzymes. Among several crops there are cultivars containing starch types with either little or no amylose known as near-waxy or waxy. This (near) amylose-free phenotype is associated with a single locus (waxy) which has been mapped to GBSS-type genes in different crops. Most waxy varieties are a result of either low or no expression of a GBSS gene. However, there are some waxy cultivars where the GBSS enzymes are expressed normally. For these types, single nucleotide polymorphisms have been hypothesized to represent amino-acid substitutions leading to loss of catalytic activity. We here confirm that the HvGBSSIa enzyme from one such waxy barley variety, CDC_Alamo, has a 90% reduction in catalytic activity. We also engineered plants with expression of transgenic C-terminal green fluorescent protein-tagged HvGBSSIa of both the non-waxy type and of the CDC_Alamo type to monitor their subcellular localization patterns in grain endosperm. HvGBSSIa from non-waxy cultivars was found to localize in discrete concentric spheres strictly within starch granules. In contrast, HvGBSSIa from waxy CDC_Alamo showed deficient starch targeting mostly into unknown subcellular bodies of 0.5-3 µm in size, indicating that the waxy phenotype of CDC_Alamo is associated with deficient targeting of HvGBSSIa into starch granules.


Assuntos
Amilose/metabolismo , Hordeum/genética , Proteínas de Plantas/genética , Polimorfismo de Nucleotídeo Único , Sintase do Amido/genética , Substituição de Aminoácidos , Catálise , Hordeum/metabolismo , Fenótipo , Proteínas de Plantas/química , Proteínas de Plantas/metabolismo , Análise de Sequência de RNA , Sintase do Amido/química , Sintase do Amido/metabolismo
8.
J Biol Chem ; 290(52): 31162-72, 2015 Dec 25.
Artigo em Inglês | MEDLINE | ID: mdl-26527682

RESUMO

Two closely related glycosyltransferases are responsible for the final step of the biosynthesis of ABO(H) human blood group A and B antigens. The two enzymes differ by only four amino acid residues, which determine whether the enzymes transfer GalNAc from UDP-GalNAc or Gal from UDP-Gal to the H-antigen acceptor. The enzymes belong to the class of GT-A folded enzymes, grouped as GT6 in the CAZy database, and are characterized by a single domain with a metal dependent retaining reaction mechanism. However, the exact role of the four amino acid residues in the specificity of the enzymes is still unresolved. In this study, we report the first structural information of a dual specificity cis-AB blood group glycosyltransferase in complex with a synthetic UDP-GalNAc derivative. Interestingly, the GalNAc moiety adopts an unusual yet catalytically productive conformation in the binding pocket, which is different from the "tucked under" conformation previously observed for the UDP-Gal donor. In addition, we show that this UDP-GalNAc derivative in complex with the H-antigen acceptor provokes the same unusual binding pocket closure as seen for the corresponding UDP-Gal derivative. Despite this, the two derivatives show vastly different kinetic properties. Our results provide a important structural insight into the donor substrate specificity and utilization in blood group biosynthesis, which can very likely be exploited for the development of new glycosyltransferase inhibitors and probes.


Assuntos
Sistema ABO de Grupos Sanguíneos/metabolismo , Glicosiltransferases/metabolismo , Açúcares de Uridina Difosfato/metabolismo , Sistema ABO de Grupos Sanguíneos/genética , Glicosiltransferases/genética , Humanos , Açúcares de Uridina Difosfato/genética
9.
J Biol Chem ; 290(9): 5354-66, 2015 Feb 27.
Artigo em Inglês | MEDLINE | ID: mdl-25561735

RESUMO

There is emerging evidence that chitinases have additional functions beyond degrading environmental chitin, such as involvement in innate and acquired immune responses, tissue remodeling, fibrosis, and serving as virulence factors of bacterial pathogens. We have recently shown that both the human chitotriosidase and a chitinase from Salmonella enterica serovar Typhimurium hydrolyze LacNAc from Galß1-4GlcNAcß-tetramethylrhodamine (LacNAc-TMR (Galß1-4GlcNAcß(CH2)8CONH(CH2)2NHCO-TMR)), a fluorescently labeled model substrate for glycans found in mammals. In this study we have examined the binding affinities of the Salmonella chitinase by carbohydrate microarray screening and found that it binds to a range of compounds, including five that contain LacNAc structures. We have further examined the hydrolytic specificity of this enzyme and chitinases from Sodalis glossinidius and Polysphondylium pallidum, which are phylogenetically related to the Salmonella chitinase, as well as unrelated chitinases from Listeria monocytogenes using the fluorescently labeled substrate analogs LacdiNAc-TMR (GalNAcß1-4GlcNAcß-TMR), LacNAc-TMR, and LacNAcß1-6LacNAcß-TMR. We found that all chitinases examined hydrolyzed LacdiNAc from the TMR aglycone to various degrees, whereas they were less active toward LacNAc-TMR conjugates. LacdiNAc is found in the mammalian glycome and is a common motif in invertebrate glycans. This substrate specificity was evident for chitinases of different phylogenetic origins. Three of the chitinases also hydrolyzed the ß1-6 bond in LacNAcß1-6LacNAcß-TMR, an activity that is of potential importance in relation to mammalian glycans. The enzymatic affinities for these mammalian-like structures suggest additional functional roles of chitinases beyond chitin hydrolysis.


Assuntos
Proteínas de Bactérias/metabolismo , Quitinases/metabolismo , Proteínas de Insetos/metabolismo , Lactose/análogos & derivados , Salmonella typhimurium/enzimologia , Amino Açúcares/química , Amino Açúcares/metabolismo , Animais , Proteínas de Bactérias/classificação , Proteínas de Bactérias/genética , Sequência de Carboidratos , Quitina/química , Quitina/metabolismo , Quitinases/classificação , Quitinases/genética , Variação Genética , Humanos , Hidrólise , Proteínas de Insetos/genética , Insetos , Cinética , Lactose/química , Lactose/metabolismo , Espectroscopia de Ressonância Magnética , Dados de Sequência Molecular , Estrutura Molecular , Filogenia , Polissacarídeos/química , Polissacarídeos/metabolismo , Ligação Proteica , Rodaminas/química , Rodaminas/metabolismo , Salmonella typhimurium/genética , Especificidade por Substrato , Vertebrados
10.
Plant Cell ; 25(10): 3961-75, 2013 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-24163312

RESUMO

Starch, unlike hydrosoluble glycogen particles, aggregates into insoluble, semicrystalline granules. In photosynthetic eukaryotes, the transition to starch accumulation occurred after plastid endosymbiosis from a preexisting cytosolic host glycogen metabolism network. This involved the recruitment of a debranching enzyme of chlamydial pathogen origin. The latter is thought to be responsible for removing misplaced branches that would otherwise yield a water-soluble polysaccharide. We now report the implication of starch debranching enzyme in the aggregation of semicrystalline granules of single-cell cyanobacteria that accumulate both glycogen and starch-like polymers. We show that an enzyme of analogous nature to the plant debranching enzyme but of a different bacterial origin was recruited for the same purpose in these organisms. Remarkably, both the plant and cyanobacterial enzymes have evolved through convergent evolution, showing novel yet identical substrate specificities from a preexisting enzyme that originally displayed the much narrower substrate preferences required for glycogen catabolism.


Assuntos
Evolução Biológica , Cianobactérias/enzimologia , Sistema da Enzima Desramificadora do Glicogênio/genética , Glicogênio/metabolismo , Oryza/enzimologia , Amido/metabolismo , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Clonagem Molecular , Cianobactérias/genética , Sistema da Enzima Desramificadora do Glicogênio/metabolismo , Mutagênese , Oryza/genética , Filogenia , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo
11.
J Biol Chem ; 289(33): 22991-23003, 2014 Aug 15.
Artigo em Inglês | MEDLINE | ID: mdl-24993830

RESUMO

The starch debranching enzymes isoamylase 1 and 2 (ISA1 and ISA2) are known to exist in a large complex and are involved in the biosynthesis and crystallization of starch. It is suggested that the function of the complex is to remove misplaced branches of growing amylopectin molecules, which would otherwise prevent the association and crystallization of adjacent linear chains. Here, we investigate the function of ISA1 and ISA2 from starch producing alga Chlamydomonas. Through complementation studies, we confirm that the STA8 locus encodes for ISA2 and sta8 mutants lack the ISA1·ISA2 heteromeric complex. However, mutants retain a functional dimeric ISA1 that is able to partly sustain starch synthesis in vivo. To better characterize ISA1, we have overexpressed and purified ISA1 from Chlamydomonas reinhardtii (CrISA1) and solved the crystal structure to 2.3 Å and in complex with maltoheptaose to 2.4 Å. Analysis of the homodimeric CrISA1 structure reveals a unique elongated structure with monomers connected end-to-end. The crystal complex reveals details about the mechanism of branch binding that explains the low activity of CrISA1 toward tightly spaced branches and reveals the presence of additional secondary surface carbohydrate binding sites.


Assuntos
Chlamydomonas reinhardtii/enzimologia , Glucanos/química , Isoamilase/química , Proteínas de Plantas/química , Cristalografia por Raios X , Estrutura Terciária de Proteína
12.
J Biol Chem ; 288(36): 26201-26208, 2013 Sep 06.
Artigo em Inglês | MEDLINE | ID: mdl-23836908

RESUMO

Glycosyltransferases (GTs) are enzymes that are involved, as Nature's "glycosylation reagents," in many fundamental biological processes including cell adhesion and blood group biosynthesis. Although of similar importance to that of other large enzyme families such as protein kinases and proteases, the undisputed potential of GTs for chemical biology and drug discovery has remained largely unrealized to date. This is due, at least in part, to a relative lack of GT inhibitors and tool compounds for structural, mechanistic, and cellular studies. In this study, we have used a novel class of GT donor analogues to obtain new structural and enzymological information for a representative blood group GT. These analogues interfere with the folding of an internal loop and the C terminus, which are essential for catalysis. Our experiments have led to the discovery of an entirely new active site folding mode for this enzyme family, which can be targeted in inhibitor development, similar to the DFG motif in protein kinases. Taken together, our results provide new insights into substrate binding, dynamics, and utilization in this important enzyme family, which can very likely be harnessed for the rational development of new GT inhibitors and probes.


Assuntos
Sistema ABO de Grupos Sanguíneos/química , Inibidores Enzimáticos/química , N-Acetilgalactosaminiltransferases/antagonistas & inibidores , N-Acetilgalactosaminiltransferases/química , Sistema ABO de Grupos Sanguíneos/metabolismo , Motivos de Aminoácidos , Catálise , Humanos , N-Acetilgalactosaminiltransferases/genética , N-Acetilgalactosaminiltransferases/metabolismo , Uridina Difosfato Galactose/análogos & derivados , Uridina Difosfato Galactose/química , Uridina Difosfato Galactose/metabolismo , Uridina Difosfato N-Acetilgalactosamina/análogos & derivados , Uridina Difosfato N-Acetilgalactosamina/química , Uridina Difosfato N-Acetilgalactosamina/metabolismo
13.
Glycoconj J ; 31(6-7): 469-73, 2014 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-25117515

RESUMO

The human blood group A and B antigens are synthesized by two highly homologous enzymes, glycosyltransferase A (GTA) and glycosyltransferase B (GTB), respectively. These enzymes catalyze the transfer of either GalNAc or Gal from their corresponding UDP-donors to αFuc1-2ßGal-R terminating acceptors. GTA and GTB differ at only four of 354 amino acids (R176G, G235S, L266M, G268A), which alter the donor specificity from UDP-GalNAc to UDP-Gal. Blood type O individuals synthesize truncated or non-functional enzymes. The cloning, crystallization and X-ray structure elucidations for GTA and GTB have revealed key residues responsible for donor discrimination and acceptor binding. Structural studies suggest that numerous conformational changes occur during the catalytic cycle. Over 300 ABO alleles are tabulated in the blood group antigen mutation database (BGMUT) that provides a framework for structure-function studies. Natural mutations are found in all regions of GTA and GTB from the active site, flexible loops, stem region and surfaces remote from the active site. Our characterizations of natural mutants near a flexible loop (V175M), on a remote surface site (P156L), in the metal binding motif (M212V) and near the acceptor binding site (L232P) demonstrate the resiliency of GTA and GTB to mutagenesis.


Assuntos
Glicosiltransferases/metabolismo , Mutação , Sequência de Bases , Cristalização , Cristalografia por Raios X , Primers do DNA , Glicosiltransferases/química , Glicosiltransferases/genética
14.
Acta Crystallogr D Biol Crystallogr ; 69(Pt 6): 1013-25, 2013 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-23695246

RESUMO

Starch, a polymer of glucose, is the major source of calories in the human diet. It has numerous industrial uses, including as a raw material for the production of first-generation bioethanol. Several classes of enzymes take part in starch biosynthesis, of which starch synthases (SSs) carry out chain elongation of both amylose and amylopectin. Plants have five classes of SS, each with different roles. The products of the reaction of SS are well known, but details of the reaction mechanism remain obscure and even less is known of how different SSs select different substrates for elongation, how they compete with each other and how their activities are regulated. Here, the first crystal structure of a soluble starch synthase is presented: that of starch synthase I (SSI) from barley refined to 2.7 Å resolution. The structure captures an open conformation of the enzyme with a surface-bound maltooligosaccharide and a disulfide bridge that precludes formation of the active site. The maltooligosaccharide-binding site is involved in substrate recognition, while the disulfide bridge is reflective of redox regulation of SSI. Activity measurements on several SSI mutants supporting these roles are also presented.


Assuntos
Hordeum/enzimologia , Proteínas de Plantas/química , Sintase do Amido/química , Sítios de Ligação , Hordeum/genética , Hordeum/metabolismo , Modelos Moleculares , Mutagênese Sítio-Dirigida , Oxirredução , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Sintase do Amido/genética , Sintase do Amido/metabolismo , Difração de Raios X
15.
Microbiology (Reading) ; 159(Pt 5): 833-847, 2013 May.
Artigo em Inglês | MEDLINE | ID: mdl-23519157

RESUMO

Bacterial chitinases (EC 3.2.1.14) and chitin-binding proteins (CBPs) play a fundamental role in the degradation of the ubiquitous biopolymer chitin, and the degradation products serve as an important nutrient source for marine- and soil-dwelling bacteria. However, it has recently become clear that representatives of both Gram-positive and Gram-negative bacterial pathogens encode chitinases and CBPs that support infection of non-chitinous mammalian hosts. This review addresses this biological role of bacterial chitinases and CBPs in terms of substrate specificities, regulation, secretion and involvement in cellular and animal infection.


Assuntos
Bactérias/enzimologia , Infecções Bacterianas/microbiologia , Proteínas de Bactérias/metabolismo , Quitina/metabolismo , Quitinases/metabolismo , Fatores de Virulência/metabolismo , Animais , Bactérias/genética , Bactérias/patogenicidade , Proteínas de Bactérias/genética , Quitinases/genética , Humanos , Fatores de Virulência/genética
16.
Chemistry ; 19(45): 15346-57, 2013 Nov 04.
Artigo em Inglês | MEDLINE | ID: mdl-24108680

RESUMO

A series of ten glycosyltransferase inhibitors has been designed and synthesized by using pyridine as a pyrophosphate surrogate. The series was prepared by conjugation of carbohydrate, pyridine, and nucleoside building blocks by using a combination of glycosylation, the Staudinger-Vilarrasa amide-bond formation, and azide-alkyne click chemistry. The compounds were evaluated as inhibitors of five metal-dependent galactosyltransferases. Crystallographic analyses of three inhibitors complexed in the active site of one of the enzymes confirmed that the pyridine moiety chelates the Mn(2+) ion causing a slight displacement (2 Å) from its original position. The carbohydrate head group occupies a different position than in the natural uridine diphosphate (UDP)-Gal substrate with little interaction with the enzyme.


Assuntos
Galactosiltransferases/antagonistas & inibidores , Piridinas/química , Carboidratos , Química Click , Galactosiltransferases/química , Difração de Raios X
17.
Biopolymers ; 99(10): 784-95, 2013 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-23754468

RESUMO

It has been observed earlier that human blood group B galactosyltransferase (GTB) hydrolyzes its donor substrate UDP-Galactose (UDP-Gal) in the absence of acceptor substrate, and that this reaction is promoted by the presence of an acceptor substrate analog, α-L-Fuc-(1,2)-ß-D-3-deoxy-Gal-O-octyl (3DD). This acceleration of enzymatic hydrolysis of UDP-Gal was traced back to an increased affinity of GTB toward the donor substrate in the presence of 3DD. Herein, we present new thermodynamic data from isothermal titration calorimetry (ITC) on the binding of donor and acceptor substrates and analogs to GTB. ITC data are supplemented by surface plasmon resonance and STD-NMR titration experiments. These new data validate mutual allosteric control of binding of donor and acceptor substrates to GTB. It is of note that ITC experiments reveal significant differences in enthalpic and entropic contributions to binding of the natural donor substrate UDP-Gal, when compared with its analog UDP-Glucose (UDP-Glc). This may reflect different degrees of ordering of an internal loop (amino acids 176-194) and the C-terminus (amino acids 346-354), which close the binding pocket on binding of UDP-Gal or UDP-Glc. As both ligands have rather similar dissociation constants KD and almost identical modes of binding this finding is unexpected. Another surprising finding is that an acceptor analog, α-L-Fuc-(1,2)-ß-D-3-amino-3-deoxy-Gal-O-octyl (3AD) as well as the constituent monosaccharide ß-D-3-amino-3-deoxy-Gal-O-octyl (3AM) effectively inhibit enzymatic hydrolysis of UDP-Gal. This is unexpected, too, because in analogy to the effects of 3DD one would have predicted acceleration of enzymatic hydrolysis of UDP-Gal. It is difficult to explain these observations based on structural data alone. Therefore, our results highlight that there is an urgent need of experimental studies into the dynamic properties of GTB.


Assuntos
Galactosiltransferases , Termodinâmica , Sítios de Ligação , Antígenos de Grupos Sanguíneos , Calorimetria , Humanos , Cinética , Especificidade por Substrato
18.
Analyst ; 138(1): 164-70, 2013 Jan 07.
Artigo em Inglês | MEDLINE | ID: mdl-23154386

RESUMO

A capillary electrophoresis system with an ultrasensitive three-color laser-induced fluorescence detector was constructed for the simultaneous measurement of glycosphingolipids conjugated with a family of BODIPY fluorophores. The compounds were separated by capillary electrophoresis and detected by laser-induced fluorescence excited within a sheath-flow cuvette. Diode-pumped solid-state lasers operating at 473 nm and 532 nm, and a diode laser operating at 633 nm were used to excite glycosphingolipids tagged with BODIPY-FL, BODIPY-TMR, and BODIPY-650/665 fluorophores. Detection limits were 34 ± 1 molecules, 67 ± 7 molecules, and 36 ± 13 molecules of BODIPY-FL, BODIPY-TMR, and BODIPY-650/665 labeled glycosphingolipids. Separation efficiencies were typically one million theoretical plates. To test the ability of the system to analyze cellular contents in an in vitro biological model, differentiated PC12 cells were co-incubated with BODIPY-FL, BODIPY-TMR, and BODIPY-650/665 labeled lactosylceramide substrates. Cells were homogenized. The metabolic products originating from the glycosphingolipid substrates were simultaneously analyzed using the system.


Assuntos
Eletroforese Capilar/métodos , Glicoesfingolipídeos/metabolismo , Espectrometria de Fluorescência/métodos , Animais , Compostos de Boro/química , Cor , Glicoesfingolipídeos/química , Lasers , Células PC12 , Ratos , Espectrometria de Fluorescência/instrumentação
19.
Anal Chem ; 84(6): 2799-804, 2012 Mar 20.
Artigo em Inglês | MEDLINE | ID: mdl-22400492

RESUMO

Metabolic cytometry is a form of chemical cytometry wherein metabolic cascades are monitored in single cells. We report the first example of metabolic cytometry where two different metabolic pathways are simultaneously monitored. Glycolipid catabolism in primary rat cerebella neurons was probed by incubation with tetramethylrhodamine-labeled GM1 (GM1-TMR). Simultaneously, both catabolism and anabolism were probed by coincubation with BODIPY-FL labeled LacCer (LacCer-BODIPY-FL). In a metabolic cytometry experiment, single cells were incubated with substrate, washed, aspirated into a capillary, and lysed. The components were separated by capillary electrophoresis equipped with a two-spectral channel laser-induced fluorescence detector. One channel monitored fluorescence generated by the metabolic products produced from GM1-TMR and the other monitored the metabolic products produced from LacCer-BODIPY-FL. The metabolic products were identified by comparison with the mobility of a set of standards. The detection system produced at least 6 orders of magnitude dynamic range in each spectral channel with negligible spectral crosstalk. Detection limits were 1 zmol for BODIPY-FL and 500 ymol for tetramethylrhodamine standard solutions.


Assuntos
Eletroforese Capilar/métodos , Glicoesfingolipídeos/metabolismo , Neurônios/metabolismo , Animais , Compostos de Boro/análise , Compostos de Boro/metabolismo , Encéfalo/citologia , Células Cultivadas , Eletroforese Capilar/instrumentação , Desenho de Equipamento , Fluorescência , Corantes Fluorescentes/análise , Corantes Fluorescentes/metabolismo , Glicoesfingolipídeos/análise , Lactosilceramidas/análise , Lactosilceramidas/metabolismo , Limite de Detecção , Redes e Vias Metabólicas , Microscopia de Fluorescência , Ratos , Rodaminas/análise , Rodaminas/metabolismo
20.
Chembiochem ; 13(11): 1673-9, 2012 Jul 23.
Artigo em Inglês | MEDLINE | ID: mdl-22740420

RESUMO

Fluorescently tagged glycosides containing terminal α(1→3) and α(1→4)-linked thiogalactopyranosides have been prepared and tested for resistance to hydrolysis by α-galactosidases. Eight fluorescent glycosides containing either galactose or 5-thiogalactose as the terminal sugar were enzymatically synthesized using galactosyltransferases, with lactosyl glycosides as acceptors and UDP-galactose or UDP-5'-thiogalactose, respectively, as donors. The glycosides were incubated with human α-galactosidase A (CAZy family GH27, a retaining glycosidase), Bacteroides fragilis α-1,3-galactosidase (GH110, an inverting glycosidase), or homogenates of MCF-7 human breast cancer cells or NG108-15 rat glioma cells. Substrate hydrolysis was monitored by capillary electrophoresis with fluorescence detection. All compounds containing terminal O-galactose were readily degraded. Their 5-thiogalactose counterparts were resistant to hydrolysis by human α-galactosidase A and the enzymes present in the cell extracts. B. fragilis α-1,3-galactosidase hydrolyzed both thio- and O-galactoside substrates; however, the thiogalactosides were hydrolyzed at only 1-3 % of the rate of O-galactosides. The hydrolytic resistance of 5-thiogalactose was also confirmed by an in vivo study using cells in culture. The results suggest that 5-thiogalactosides may be useful tools for the study of anabolic pathways in cell extracts or in single cells.


Assuntos
Neoplasias da Mama/metabolismo , Glioma/metabolismo , Tiogalactosídeos/metabolismo , alfa-Galactosidase/metabolismo , Animais , Bacteroides fragilis/enzimologia , Neoplasias da Mama/patologia , Feminino , Glioma/patologia , Humanos , Hidrólise , Estrutura Molecular , Ratos , Tiogalactosídeos/síntese química , Tiogalactosídeos/química , Células Tumorais Cultivadas
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