Detalhe da pesquisa
1.
Revisiting the recombinant history of HIV-1 group M with dynamic network community detection.
Proc Natl Acad Sci U S A
; 119(19): e2108815119, 2022 05 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-35500121
2.
Phylogenetic Reconstruction and Functional Characterization of the Ancestral Nef Protein of Primate Lentiviruses.
Mol Biol Evol
; 40(8)2023 08 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-37463439
3.
Using networks to analyze and visualize the distribution of overlapping genes in virus genomes.
PLoS Pathog
; 18(2): e1010331, 2022 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-35202429
4.
Optimized phylogenetic clustering of HIV-1 sequence data for public health applications.
PLoS Comput Biol
; 18(11): e1010745, 2022 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-36449514
5.
HyPhy 2.5-A Customizable Platform for Evolutionary Hypothesis Testing Using Phylogenies.
Mol Biol Evol
; 37(1): 295-299, 2020 Jan 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-31504749
6.
Genetic Diversity, Compartmentalization, and Age of HIV Proviruses Persisting in CD4+ T Cell Subsets during Long-Term Combination Antiretroviral Therapy.
J Virol
; 94(5)2020 02 14.
Artigo
em Inglês
| MEDLINE | ID: mdl-31776273
7.
Phylogenetic approach to recover integration dates of latent HIV sequences within-host.
Proc Natl Acad Sci U S A
; 115(38): E8958-E8967, 2018 09 18.
Artigo
em Inglês
| MEDLINE | ID: mdl-30185556
8.
Accumulation of integrase strand transfer inhibitor resistance mutations confers high-level resistance to dolutegravir in non-B subtype HIV-1 strains from patients failing raltegravir in Uganda.
J Antimicrob Chemother
; 75(12): 3525-3533, 2020 12 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-32853364
9.
HIV Diversity and Genetic Compartmentalization in Blood and Testes during Suppressive Antiretroviral Therapy.
J Virol
; 93(17)2019 09 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-31189714
10.
First-line HIV treatment failures in non-B subtypes and recombinants: a cross-sectional analysis of multiple populations in Uganda.
AIDS Res Ther
; 16(1): 3, 2019 01 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-30670037
11.
Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison.
Mol Biol Evol
; 34(1): 185-203, 2017 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-28053012
12.
Quantitation of the latent HIV-1 reservoir from the sequence diversity in viral outgrowth assays.
Retrovirology
; 15(1): 47, 2018 07 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-29976219
13.
node.dating: dating ancestors in phylogenetic trees in R.
Bioinformatics
; 33(6): 932-934, 2017 03 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-28365756
14.
Genetic Cluster Analysis for HIV Prevention.
Curr HIV/AIDS Rep
; 15(2): 182-189, 2018 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-29460226
15.
A model-based clustering method to detect infectious disease transmission outbreaks from sequence variation.
PLoS Comput Biol
; 13(11): e1005868, 2017 Nov.
Artigo
em Inglês
| MEDLINE | ID: mdl-29131825
16.
Molecular source attribution.
PLoS Comput Biol
; 18(11): e1010649, 2022 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-36395093
17.
Genotypic susceptibility score (GSS) and CD4+ T cell recovery in HIV-1 patients with suppressed viral load.
J Antimicrob Chemother
; 72(2): 496-503, 2017 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-27999069
18.
Population-Level Immune-Mediated Adaptation in HIV-1 Polymerase during the North American Epidemic.
J Virol
; 90(3): 1244-58, 2016 02 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-26559841
19.
Genotypic and functional impact of HIV-1 adaptation to its host population during the North American epidemic.
PLoS Genet
; 10(4): e1004295, 2014 Apr.
Artigo
em Inglês
| MEDLINE | ID: mdl-24762668
20.
Phylodynamic Inference with Kernel ABC and Its Application to HIV Epidemiology.
Mol Biol Evol
; 32(9): 2483-95, 2015 Sep.
Artigo
em Inglês
| MEDLINE | ID: mdl-26006189