Detalhe da pesquisa
1.
Adaptive laboratory evolution and independent component analysis disentangle complex vancomycin adaptation trajectories.
Proc Natl Acad Sci U S A
; 119(30): e2118262119, 2022 07 26.
Artigo
em Inglês
| MEDLINE | ID: mdl-35858453
2.
RiboRid: A low cost, advanced, and ultra-efficient method to remove ribosomal RNA for bacterial transcriptomics.
PLoS Genet
; 17(9): e1009821, 2021 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-34570751
3.
iModulonDB: a knowledgebase of microbial transcriptional regulation derived from machine learning.
Nucleic Acids Res
; 49(D1): D112-D120, 2021 01 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-33045728
4.
Revealing 29 sets of independently modulated genes in Staphylococcus aureus, their regulators, and role in key physiological response.
Proc Natl Acad Sci U S A
; 117(29): 17228-17239, 2020 07 21.
Artigo
em Inglês
| MEDLINE | ID: mdl-32616573
5.
Independent component analysis recovers consistent regulatory signals from disparate datasets.
PLoS Comput Biol
; 17(2): e1008647, 2021 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-33529205
6.
Adaptive evolution reveals a tradeoff between growth rate and oxidative stress during naphthoquinone-based aerobic respiration.
Proc Natl Acad Sci U S A
; 116(50): 25287-25292, 2019 12 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-31767748
7.
Optimal dimensionality selection for independent component analysis of transcriptomic data.
BMC Bioinformatics
; 22(1): 584, 2021 Dec 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-34879815
8.
A computational knowledge-base elucidates the response of Staphylococcus aureus to different media types.
PLoS Comput Biol
; 15(1): e1006644, 2019 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-30625152
9.
Independent component analysis reveals 49 independently modulated gene sets within the global transcriptional regulatory architecture of multidrug-resistant Acinetobacter baumannii.
mSystems
; 9(2): e0060623, 2024 Feb 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-38189271
10.
Elucidating the CodY regulon in Staphylococcus aureus USA300 substrains TCH1516 and LAC.
mSystems
; 8(4): e0027923, 2023 08 31.
Artigo
em Inglês
| MEDLINE | ID: mdl-37310465
11.
Elucidation of independently modulated genes in Streptococcus pyogenes reveals carbon sources that control its expression of hemolytic toxins.
mSystems
; 8(3): e0024723, 2023 Jun 29.
Artigo
em Inglês
| MEDLINE | ID: mdl-37278526
12.
Coordination of CcpA and CodY Regulators in Staphylococcus aureus USA300 Strains.
mSystems
; 7(6): e0048022, 2022 12 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-36321827
13.
Pan-Genome Analysis of Transcriptional Regulation in Six Salmonella enterica Serovar Typhimurium Strains Reveals Their Different Regulatory Structures.
mSystems
; 7(6): e0046722, 2022 12 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-36317888
14.
Machine Learning of All Mycobacterium tuberculosis H37Rv RNA-seq Data Reveals a Structured Interplay between Metabolism, Stress Response, and Infection.
mSphere
; 7(2): e0003322, 2022 04 27.
Artigo
em Inglês
| MEDLINE | ID: mdl-35306876
15.
Malnutrition among Cancer Patients in a Tertiary Care Centre: A Descriptive Cross-sectional Study.
JNMA J Nepal Med Assoc
; 60(255): 959-961, 2022 Nov 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-36705180
16.
Experimental Evolution Reveals Unifying Systems-Level Adaptations but Diversity in Driving Genotypes.
mSystems
; 7(6): e0016522, 2022 12 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-36226969
17.
Mathematical models to study the biology of pathogens and the infectious diseases they cause.
iScience
; 25(4): 104079, 2022 Apr 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-35359802
18.
Machine Learning Uncovers a Data-Driven Transcriptional Regulatory Network for the Crenarchaeal Thermoacidophile Sulfolobus acidocaldarius.
Front Microbiol
; 12: 753521, 2021.
Artigo
em Inglês
| MEDLINE | ID: mdl-34777307
19.
Machine Learning of Bacterial Transcriptomes Reveals Responses Underlying Differential Antibiotic Susceptibility.
mSphere
; 6(4): e0044321, 2021 08 25.
Artigo
em Inglês
| MEDLINE | ID: mdl-34431696
20.
Pangenome Analytics Reveal Two-Component Systems as Conserved Targets in ESKAPEE Pathogens.
mSystems
; 6(1)2021 Jan 26.
Artigo
em Inglês
| MEDLINE | ID: mdl-33500331