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1.
Neural Comput ; 36(5): 858-896, 2024 Apr 23.
Artigo em Inglês | MEDLINE | ID: mdl-38457768

RESUMO

Unconditional scene inference and generation are challenging to learn jointly with a single compositional model. Despite encouraging progress on models that extract object-centric representations ("slots") from images, unconditional generation of scenes from slots has received less attention. This is primarily because learning the multiobject relations necessary to imagine coherent scenes is difficult. We hypothesize that most existing slot-based models have a limited ability to learn object correlations. We propose two improvements that strengthen object correlation learning. The first is to condition the slots on a global, scene-level variable that captures higher-order correlations between slots. Second, we address the fundamental lack of a canonical order for objects in images by proposing to learn a consistent order to use for the autoregressive generation of scene objects. Specifically, we train an autoregressive slot prior to sequentially generate scene objects following a learned order. Ordered slot inference entails first estimating a randomly ordered set of slots using existing approaches for extracting slots from images, then aligning those slots to ordered slots generated autoregressively with the slot prior. Our experiments across three multiobject environments demonstrate clear gains in unconditional scene generation quality. Detailed ablation studies are also provided that validate the two proposed improvements.

2.
J Biomed Inform ; 89: 29-40, 2019 01.
Artigo em Inglês | MEDLINE | ID: mdl-30414474

RESUMO

Smartphone and smartwatch technology is changing the transmission and monitoring landscape for patients and research participants to communicate their healthcare information in real time. Flexible, bidirectional and real-time control of communication allows development of a rich set of healthcare applications that can provide interactivity with the participant and adapt dynamically to their changing environment. Additionally, smartwatches have a variety of sensors suitable for collecting physical activity and location data. The combination of all these features makes it possible to transmit the collected data to a remote server, and thus, to monitor physical activity and potentially social activity in real time. As smartwatches exhibit high user acceptability and increasing popularity, they are ideal devices for monitoring activities for extended periods of time to investigate the physical activity patterns in free-living condition and their relationship with the seemingly random occurring illnesses, which have remained a challenge in the current literature. Therefore, the purpose of this study was to develop a smartwatch-based framework for real-time and online assessment and mobility monitoring (ROAMM). The proposed ROAMM framework will include a smartwatch application and server. The smartwatch application will be used to collect and preprocess data. The server will be used to store and retrieve data, remote monitor, and for other administrative purposes. With the integration of sensor-based and user-reported data collection, the ROAMM framework allows for data visualization and summary statistics in real-time.


Assuntos
Exercício Físico , Aplicativos Móveis , Monitorização Fisiológica/instrumentação , Smartphone , Acelerometria/instrumentação , Humanos
3.
BMC Med Inform Decis Mak ; 19(1): 131, 2019 07 12.
Artigo em Inglês | MEDLINE | ID: mdl-31299965

RESUMO

BACKGROUND: High utilizers receive great attention in health care research because they have a largely disproportionate spending. Existing analyses usually identify high utilizers with an empirical threshold on the number of health care visits or associated expenditures. However, such count-and-cost based criteria might not be best for identifying impactable high utilizers. METHODS: We propose an approach to identify impactable high utilizers using residuals from regression-based health care utilization risk adjustment models to analyze the variations in health care expenditures. We develop linear and tree-based models to best adjust per-member per-month health care cost by clinical and socioeconomic risk factors using a large administrative claims dataset from a state public insurance program. RESULTS: The risk adjustment models identify a group of patients with high residuals whose demographics and categorization of comorbidities are similar to other patients but who have a significant amount of unexplained health care utilization. Deeper analysis of the essential hypertension cohort and chronic kidney disease cohort shows these variations in expenditures could be within individual ICD-9-CM codes and from different mixtures of ICD-9-CM codes. Additionally, correlation analysis with 3M™ Potentially Preventable Events (PPE) software shows that a portion of this utilization may be preventable. In addition, the high utilizers persist from year to year. CONCLUSIONS: After risk adjustment, patients with higher than expected expenditures (high residuals) are associated with more potentially preventable events. These residuals are temporally consistent and hence may be useful in identifying and intervening impactable high utilizers.


Assuntos
Custos de Cuidados de Saúde , Gastos em Saúde , Medicaid , Aceitação pelo Paciente de Cuidados de Saúde , Risco Ajustado , Adulto , Feminino , Custos de Cuidados de Saúde/estatística & dados numéricos , Gastos em Saúde/estatística & dados numéricos , Humanos , Masculino , Medicaid/estatística & dados numéricos , Modelos Estatísticos , Aceitação pelo Paciente de Cuidados de Saúde/estatística & dados numéricos , Estados Unidos
4.
Biomed Eng Online ; 17(Suppl 1): 131, 2018 Nov 20.
Artigo em Inglês | MEDLINE | ID: mdl-30458798

RESUMO

BACKGROUND: This paper studies the temporal consistency of health care expenditures in a large state Medicaid program. Predictive machine learning models were used to forecast the expenditures, especially for the high-cost, high-need (HCHN) patients. RESULTS: We systematically tests temporal correlation of patient-level health care expenditures in both the short and long terms. The results suggest that medical expenditures are significantly correlated over multiple periods. Our work demonstrates a prevalent and strong temporal correlation and shows promise for predicting future health care expenditures using machine learning. Temporal correlation is stronger in HCHN patients and their expenditures can be better predicted. Including more past periods is beneficial for better predictive performance. CONCLUSIONS: This study shows that there is significant temporal correlation in health care expenditures. Machine learning models can help to accurately forecast the expenditures. These results could advance the field toward precise preventive care to lower overall health care costs and deliver care more efficiently.


Assuntos
Custos de Cuidados de Saúde , Gastos em Saúde , Aprendizado de Máquina , Medicaid/economia , Adolescente , Adulto , Idoso , Algoritmos , Doença Crônica/economia , Doença Crônica/terapia , Coleta de Dados , Economia Médica , Feminino , Pesquisa sobre Serviços de Saúde , Humanos , Masculino , Pessoa de Meia-Idade , Multimorbidade , Texas , Estados Unidos , Adulto Jovem
5.
BMC Med Inform Decis Mak ; 18(Suppl 4): 124, 2018 12 12.
Artigo em Inglês | MEDLINE | ID: mdl-30537957

RESUMO

BACKGROUND: There has been an increasing interest in understanding the usefulness of wrist-based accelerometer data for physical activity (PA) assessment due to the ease of use and higher user compliance than other body placements. PA assessment studies have relied on machine learning methods which take accelerometer data in forms of variables, or feature vectors. METHODS: In this work, we introduce automated shape feature derivation methods to transform epochs of accelerometer data into feature vectors. As the first step, recurring patterns in the collected data are identified and placed in a codebook. Similarities between epochs of accelerometer data and codebook's patterns are the basis of feature calculations. In this paper, we demonstrate supervised and unsupervised approaches to learn codebooks. We evaluated these methods and compared them with the standard statistical measures for PA assessment. The experiments were performed on 146 participants who wore an ActiGraph GT3X+ accelerometer on the right wrist and performed 33 activities of daily living. RESULTS: Our evaluations show that the shape feature derivation methods were able to perform comparably with the standard wrist model (F1-score: 0.89) for identifying sedentary PAs (F1-scores of 0.86 and 0.85 for supervised and unsupervised methods, respectively). This was also observed for identifying locomotion activities (F1-scores: 0.87, 0.83, and 0.81 for the standard wrist, supervised, unsupervised models, respectively). All the wrist models were able to estimate energy expenditure required for PAs with low error (rMSE: 0.90, 0.93, and 0.90 for the standard wrist, supervised, and unsupervised models, respectively). CONCLUSION: The automated shape feature derivation methods offer insights into the performed activities by providing a summary of repeating patterns in the accelerometer data. Furthermore, they could be used as efficient alternatives (or additions) for manually engineered features, especially important for cases where the latter fail to provide sufficient information to machine learning methods for PA assessment.


Assuntos
Acelerometria , Atividades Cotidianas , Aprendizado de Máquina , Punho , Adulto , Idoso , Idoso de 80 Anos ou mais , Metabolismo Energético , Feminino , Humanos , Locomoção , Masculino , Pessoa de Meia-Idade
6.
BMC Bioinformatics ; 15 Suppl 8: S1, 2014.
Artigo em Inglês | MEDLINE | ID: mdl-25082539

RESUMO

BACKGROUND: One segment of a RNA sequence might be paired with another segment of the same RNA sequence due to the force of hydrogen bonds. This two-dimensional structure is called the RNA sequence's secondary structure. Several algorithms have been proposed to predict an RNA sequence's secondary structure. These algorithms are referred to as RNA folding algorithms. RESULTS: We develop cache efficient, multicore, and GPU algorithms for RNA folding using Nussinov's algorithm. CONCLUSIONS: Our cache efficient algorithm provides a speedup between 1.6 and 3.0 relative to a naive straightforward single core code. The multicore version of the cache efficient single core algorithm provides a speedup, relative to the naive single core algorithm, between 7.5 and 14.0 on a 6 core hyperthreaded CPU. Our GPU algorithm for the NVIDIA C2050 is up to 1582 times as fast as the naive single core algorithm and between 5.1 and 11.2 times as fast as the fastest previously known GPU algorithm for Nussinov RNA folding.


Assuntos
Algoritmos , Biologia Computacional/instrumentação , Dobramento de RNA , RNA/química , Biologia Computacional/métodos , Computadores , Microcomputadores , Conformação de Ácido Nucleico , RNA/genética
7.
Bioinformatics ; 29(2): 166-74, 2013 Jan 15.
Artigo em Inglês | MEDLINE | ID: mdl-23162082

RESUMO

MOTIVATION: Phylogenetics, or reconstructing the evolutionary relationships of organisms, is critical for understanding evolution. A large number of heuristic algorithms for phylogenetics have been developed, some of which enable estimates of trees with tens of thousands of taxa. Such trees may not be robust, as small changes in the input data can cause major differences in the optimal topology. Tools that can assess the quality and stability of phylogenetic tree estimates and identify the most reliable parts of the tree are needed. RESULTS: We define measures that assess the stability of trees, subtrees and individual taxa with respect to changes in the input sequences. Our measures consider changes at the finest granularity in the input data (i.e. individual nucleotides). We demonstrate the effectiveness of our measures on large published datasets. Our measures are computationally feasible for phylogenetic datasets consisting of tens of thousands of taxa. AVAILABILITY: This software is available at http://bioinformatics.cise.ufl.edu/phylostab CONTACT: sheikh@cise.ufl.edu


Assuntos
Filogenia , Algoritmos , Animais , Mamíferos/classificação , Mamíferos/genética , Plantas/classificação , Plantas/genética , Alinhamento de Sequência , Análise de Sequência de DNA , Software
8.
Educ Gerontol ; 50(4): 282-295, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38737621

RESUMO

Smartwatches are a type of wearable device that enable continuous monitoring of an individual's activities and critical health metrics. As the number of older adults age 65+ continues to grow in the U.S., so does their usage of smartwatches, making it necessary to understand the real-world uptake and use of these devices to monitor health. In this study, older adults with a relatively high level of education and digital skills were provided with a smartwatch equipped with a mobile application (ROAMM) that was worn for a median of 14 days. Usability surveys were distributed, and a qualitative analysis was performed about participants' experience using the smartwatch and ROAMM application. Constructs from the Technology Acceptance Model and Consolidated Framework for Implementation Research were incorporated into in-depth interviews, which were recorded and transcribed. Data were analyzed using the constant comparative method. Interviews among 30 older adults revealed the following main themes: 1) familiarization with the device and adoption and acceptance, 2) factors encouraging usage, such as a doctor's endorsement or the appeal of tracking one's health, and 3) barriers to usage, such as insufficient education and training and the desire for additional functionality. Overall, participants found the smartwatch easy to use and were likely to continue using the device in a long-term study. Data generated from smartwatches have the potential to engage individuals about their health and could inspire them to participate more actively during clinical encounters.

9.
IEEE Trans Pattern Anal Mach Intell ; 45(12): 14872-14887, 2023 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-37669196

RESUMO

We present a new approach to unsupervised shape correspondence learning between pairs of point clouds. We make the first attempt to adapt the classical locally linear embedding algorithm (LLE)-originally designed for nonlinear dimensionality reduction-for shape correspondence. The key idea is to find dense correspondences between shapes by first obtaining high-dimensional neighborhood-preserving embeddings of low-dimensional point clouds and subsequently aligning the source and target embeddings using locally linear transformations. We demonstrate that learning the embedding using a new LLE-inspired point cloud reconstruction objective results in accurate shape correspondences. More specifically, the approach comprises an end-to-end learnable framework of extracting high-dimensional neighborhood-preserving embeddings, estimating locally linear transformations in the embedding space, and reconstructing shapes via divergence measure-based alignment of probability density functions built over reconstructed and target shapes. Our approach enforces embeddings of shapes in correspondence to lie in the same universal/canonical embedding space, which eventually helps regularize the learning process and leads to a simple nearest neighbors approach between shape embeddings for finding reliable correspondences. Comprehensive experiments show that the new method makes noticeable improvements over state-of-the-art approaches on standard shape correspondence benchmark datasets covering both human and nonhuman shapes.

10.
J Gerontol A Biol Sci Med Sci ; 78(5): 821-830, 2023 05 11.
Artigo em Inglês | MEDLINE | ID: mdl-36744611

RESUMO

BACKGROUND: Early detection of mobility decline is critical to prevent subsequent reductions in quality of life, disability, and mortality. However, traditional approaches to mobility assessment are limited in their ability to capture daily fluctuations that align with sporadic health events. We aim to describe findings from a pilot study of our Real-time Online Assessment and Mobility Monitor (ROAMM) smartwatch application, which uniquely captures multiple streams of data in real time in ecological settings. METHODS: Data come from a sample of 31 participants (Mage = 74.7, 51.6% female) who used ROAMM for approximately 2 weeks. We describe the usability and feasibility of ROAMM, summarize prompt data using descriptive metrics, and compare prompt data with traditional survey-based questionnaires or other established measures. RESULTS: Participants were satisfied with ROAMM's function (87.1%) and ranked the usability as "above average." Most were highly engaged (average adjusted compliance = 70.7%) and the majority reported being "likely" to enroll in a 2-year study (77.4%). Some smartwatch features were correlated with their respective traditional measurements (eg, certain GPS-derived life-space mobility features (r = 0.50-0.51, p < .05) and ecologically measured pain (r = 0.72, p = .01), but others were not (eg, ecologically measured fatigue). CONCLUSIONS: ROAMM was usable, acceptable, and effective at measuring mobility and risk factors for mobility decline in our pilot sample. Additional work with a larger and more diverse sample is necessary to confirm associations between smartwatch-measured features and traditional measures. By monitoring multiple data streams simultaneously in ecological settings, this technology could uniquely contribute to the evolution of mobility measurement and risk factors for mobility loss.


Assuntos
Dor , Qualidade de Vida , Humanos , Feminino , Masculino , Projetos Piloto , Estudos de Viabilidade , Inquéritos e Questionários
11.
BMC Genomics ; 13 Suppl 2: S2, 2012 Apr 12.
Artigo em Inglês | MEDLINE | ID: mdl-22537297

RESUMO

BACKGROUND: Microarray experiments often measure expressions of genes taken from sample tissues in the presence of external perturbations such as medication, radiation, or disease. The external perturbation can change the expressions of some genes directly or indirectly through gene interaction network. In this paper, we focus on an important class of such microarray experiments that inherently have two groups of tissue samples. When such different groups exist, the changes in expressions for some of the genes after the perturbation can be different between the two groups. It is not only important to identify the genes that respond differently across the two groups, but also to mine the reason behind this differential response. In this paper, we aim to identify the cause of this differential behavior of genes, whether because of the perturbation or due to interactions with other genes. RESULTS: We propose a new probabilistic Bayesian method CMRF based on Markov Random Field to identify such genes. CMRF leverages the information about gene interactions as the prior of the model. We compare the accuracy of CMRF with SSEM and Student's t test and our old method SMRF on semi-synthetic dataset generated from microarray data. CMRF obtains high accuracy and outperforms all the other three methods. We also conduct a statistical significance test using a parametric noise based experiment to evaluate the accuracy of our method. In this experiment, CMRF generates significant regions of confidence for various parameter settings. CONCLUSIONS: In this paper, we solved the problem of finding primarily differentially regulated genes in the presence of external perturbations when the data is sampled from two groups. The probabilistic Bayesian method CMRF based on Markov Random Field incorporates dependency structure of the gene networks as the prior to the model. Experimental results on synthetic and real datasets demonstrated the superiority of CMRF compared to other simple techniques.


Assuntos
Perfilação da Expressão Gênica/métodos , Regulação da Expressão Gênica , Redes Reguladoras de Genes , Análise de Sequência com Séries de Oligonucleotídeos/métodos , Linfócitos B/efeitos da radiação , Teorema de Bayes , Hepatite C/tratamento farmacológico , Hepatite C/genética , Humanos , Cadeias de Markov , Modelos Estatísticos
12.
J Imaging ; 8(4)2022 Apr 06.
Artigo em Inglês | MEDLINE | ID: mdl-35448228

RESUMO

Travel-time estimation of traffic flow is an important problem with critical implications for traffic congestion analysis. We developed techniques for using intersection videos to identify vehicle trajectories across multiple cameras and analyze corridor travel time. Our approach consists of (1) multi-object single-camera tracking, (2) vehicle re-identification among different cameras, (3) multi-object multi-camera tracking, and (4) travel-time estimation. We evaluated the proposed framework on real intersections in Florida with pan and fisheye cameras. The experimental results demonstrate the viability and effectiveness of our method.

13.
AMIA Annu Symp Proc ; 2022: 212-220, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-37128363

RESUMO

Assessments of Life-space Mobility (LSM) evaluate the locations of movement and their frequency over a period of time to understand mobility patterns. Advancements in and miniaturization of GPS sensors in mobile devices like smartwatches could facilitate objective and high-resolution assessment of life-space mobility. The purpose of this study was to compare self-reported measures to GPS-based LSM extracted from 27 participants (44.4% female, aged 65+ years) who wore a smartwatch for 1-2 weeks at two different site locations (Connecticut and Florida). GPS features (e.g., excursion size/span) were compared to self-reported LSM with and without an indicator for needing assistance. Although correlations between self-reported measures and GPS-based LSM were positive, none were statistically significant. The correlations improved slightly when needing assistance was included, but statistical significance was achieved only for excursion size (r=0.40, P=0.04). The poor correlations between GPS-based and self-reported indicators suggest that they capture different dimensions of life-space mobility.


Assuntos
Atividades Cotidianas , Computadores de Mão , Humanos , Feminino , Idoso , Masculino , Autorrelato , Movimento
14.
JMIR Mhealth Uhealth ; 9(5): e23681, 2021 05 03.
Artigo em Inglês | MEDLINE | ID: mdl-33938809

RESUMO

BACKGROUND: Research has shown the feasibility of human activity recognition using wearable accelerometer devices. Different studies have used varying numbers and placements for data collection using sensors. OBJECTIVE: This study aims to compare accuracy performance between multiple and variable placements of accelerometer devices in categorizing the type of physical activity and corresponding energy expenditure in older adults. METHODS: In total, 93 participants (mean age 72.2 years, SD 7.1) completed a total of 32 activities of daily life in a laboratory setting. Activities were classified as sedentary versus nonsedentary, locomotion versus nonlocomotion, and lifestyle versus nonlifestyle activities (eg, leisure walk vs computer work). A portable metabolic unit was worn during each activity to measure metabolic equivalents (METs). Accelerometers were placed on 5 different body positions: wrist, hip, ankle, upper arm, and thigh. Accelerometer data from each body position and combinations of positions were used to develop random forest models to assess activity category recognition accuracy and MET estimation. RESULTS: Model performance for both MET estimation and activity category recognition were strengthened with the use of additional accelerometer devices. However, a single accelerometer on the ankle, upper arm, hip, thigh, or wrist had only a 0.03-0.09 MET increase in prediction error compared with wearing all 5 devices. Balanced accuracy showed similar trends with slight decreases in balanced accuracy for the detection of locomotion (balanced accuracy decrease range 0-0.01), sedentary (balanced accuracy decrease range 0.05-0.13), and lifestyle activities (balanced accuracy decrease range 0.04-0.08) compared with all 5 placements. The accuracy of recognizing activity categories increased with additional placements (accuracy decrease range 0.15-0.29). Notably, the hip was the best single body position for MET estimation and activity category recognition. CONCLUSIONS: Additional accelerometer devices slightly enhance activity recognition accuracy and MET estimation in older adults. However, given the extra burden of wearing additional devices, single accelerometers with appropriate placement appear to be sufficient for estimating energy expenditure and activity category recognition in older adults.


Assuntos
Acelerometria , Exercício Físico , Idoso , Metabolismo Energético , Atividades Humanas , Humanos , Punho
15.
JMIR Aging ; 4(3): e24553, 2021 Jul 14.
Artigo em Inglês | MEDLINE | ID: mdl-34259638

RESUMO

BACKGROUND: Smartwatches enable physicians to monitor symptoms in patients with knee osteoarthritis, their behavior, and their environment. Older adults experience fluctuations in their pain and related symptoms (mood, fatigue, and sleep quality) that smartwatches are ideally suited to capture remotely in a convenient manner. OBJECTIVE: The aim of this study was to evaluate satisfaction, usability, and compliance using the real-time, online assessment and mobility monitoring (ROAMM) mobile app designed for smartwatches for individuals with knee osteoarthritis. METHODS: Participants (N=28; mean age 73.2, SD 5.5 years; 70% female) with reported knee osteoarthritis were asked to wear a smartwatch with the ROAMM app installed. They were prompted to report their prior night's sleep quality in the morning, followed by ecological momentary assessments (EMAs) of their pain, fatigue, mood, and activity in the morning, afternoon, and evening. Satisfaction, comfort, and usability were evaluated using a standardized questionnaire. Compliance with regard to answering EMAs was calculated after excluding time when the watch was not being worn for technical reasons (eg, while charging). RESULTS: A majority of participants reported that the text displayed was large enough to read (22/26, 85%), and all participants found it easy to enter ratings using the smartwatch. Approximately half of the participants found the smartwatch to be comfortable (14/26, 54%) and would consider wearing it as their personal watch (11/24, 46%). Most participants were satisfied with its battery charging system (20/26, 77%). A majority of participants (19/26, 73%) expressed their willingness to use the ROAMM app for a 1-year research study. The overall EMA compliance rate was 83% (2505/3036 responses). The compliance rate was lower among those not regularly wearing a wristwatch (10/26, 88% vs 16/26, 71%) and among those who found the text too small to read (4/26, 86% vs 22/26, 60%). CONCLUSIONS: Older adults with knee osteoarthritis positively rated the ROAMM smartwatch app and were generally satisfied with the device. The high compliance rates coupled with the willingness to participate in a long-term study suggest that the ROAMM app is a viable approach to remotely collecting health symptoms and behaviors for both research and clinical endeavors.

16.
JMIR Mhealth Uhealth ; 9(1): e19609, 2021 01 13.
Artigo em Inglês | MEDLINE | ID: mdl-33439135

RESUMO

BACKGROUND: Older adults who experience pain are more likely to reduce their community and life-space mobility (ie, the usual range of places in an environment in which a person engages). However, there is significant day-to-day variability in pain experiences that offer unique insights into the consequences on life-space mobility, which are not well understood. This variability is complex and cannot be captured with traditional recall-based pain surveys. As a solution, ecological momentary assessments record repeated pain experiences throughout the day in the natural environment. OBJECTIVE: The aim of this study was to examine the temporal association between ecological momentary assessments of pain and GPS metrics in older adults with symptomatic knee osteoarthritis by using a smartwatch platform called Real-time Online Assessment and Mobility Monitor. METHODS: Participants (n=19, mean 73.1 years, SD 4.8; female: 13/19, 68%; male: 6/19, 32%) wore a smartwatch for a mean period of 13.16 days (SD 2.94). Participants were prompted in their natural environment about their pain intensity (range 0-10) at random time windows in the morning, afternoon, and evening. GPS coordinates were collected at 15-minute intervals and aggregated each day into excursion, ellipsoid, clustering, and trip frequency features. Pain intensity ratings were averaged across time windows for each day. A random effects model was used to investigate the within and between-person effects. RESULTS: The daily mean pain intensities reported by participants ranged between 0 and 8 with 40% reporting intensities ≥2. The within-person associations between pain intensity and GPS features were more likely to be statistically significant than those observed between persons. Within-person pain intensity was significantly associated with excursion size, and others (excursion span, total distance, and ellipse major axis) showed a statistical trend (excursion span: P=.08; total distance: P=.07; ellipse major axis: P=.07). Each point increase in the mean pain intensity was associated with a 3.06 km decrease in excursion size, 2.89 km decrease in excursion span, 5.71 km decrease total distance travelled per day, 31.4 km2 decrease in ellipse area, 0.47 km decrease ellipse minor axis, and 3.64 km decrease in ellipse major axis. While not statistically significant, the point estimates for number of clusters (P=.73), frequency of trips (P=.81), and homestay (P=.15) were positively associated with pain intensity, and entropy (P=.99) was negatively associated with pain intensity. CONCLUSIONS: In this demonstration study, higher intensity knee pain in older adults was associated with lower life-space mobility. Results demonstrate that a custom-designed smartwatch platform is effective at simultaneously collecting rich information about ecological pain and life-space mobility. Such smart tools are expected to be important for remote health interventions that harness the variability in pain symptoms while understanding their impact on life-space mobility.


Assuntos
Osteoartrite do Joelho , Idoso , Avaliação Momentânea Ecológica , Feminino , Humanos , Masculino , Dor , Inquéritos e Questionários
17.
Bioinformatics ; 25(17): 2208-15, 2009 Sep 01.
Artigo em Inglês | MEDLINE | ID: mdl-19528087

RESUMO

MOTIVATION: One of the mutational processes that has been monitored genome-wide is the occurrence of regional DNA copy number alterations (CNAs), which may lead to deletion or over-expression of tumor suppressors or oncogenes, respectively. Understanding the relationship between CNAs and different cancer types is a fundamental problem in cancer studies. RESULTS: This article develops an efficient method that can accurately model the progression of the cancer markers and reconstruct evolutionary relationship between multiple types of cancers using comparative genomic hybridization (CGH) data. Such modeling can lead to better understanding of the commonalities and differences between multiple cancer types and potential therapies. We have developed an automatic method to infer a graph model for the markers of multiple cancers from a large population of CGH data. Our method identifies highly related markers across different cancer types. It then builds a directed acyclic graph that shows the evolutionary history of these markers based on how common each marker is in different cancer types. We demonstrated the use of this model in determining the importance of markers in cancer evolution. We have also developed a new method to measure the evolutionary distance between different cancers based on their markers. This method employs the graph model we developed for the individual markers to measure the distance between pairs of cancers. We used this measure to create an evolutionary tree for multiple cancers. Our experiments on Progenetix database show that our markers are largely consistent to the reported hot-spot imbalances and most frequent imbalances. The results show that our distance measure can accurately reconstruct the evolutionary relationship between multiple cancer types.


Assuntos
Hibridização Genômica Comparativa , Modelos Genéticos , Biomarcadores Tumorais/genética , Dosagem de Genes , Humanos , Neoplasias/genética , Neoplasias/patologia , Filogenia
18.
JMIR Hum Factors ; 7(4): e19769, 2020 Oct 30.
Artigo em Inglês | MEDLINE | ID: mdl-33124988

RESUMO

BACKGROUND: Wearable technology, such as smartwatches, can capture valuable patient-generated data and help inform patient care. Electronic health records provide logical and practical platforms for including such data, but it is necessary to evaluate the way the data are presented and visualized. OBJECTIVE: The aim of this study is to evaluate a graphical interface that displays patients' health data from smartwatches, mimicking the integration within the environment of electronic health records. METHODS: A total of 12 health care professionals evaluated a simulated interface using a usability scale questionnaire, testing the clarity of the interface, colors, usefulness of information, navigation, and readability of text. RESULTS: The interface was positively received, with 14 out of the 16 questions generating a score of 5 or greater among at least 75% of participants (9/12). On an 8-point Likert scale, the highest rated features of the interface were quick turnaround times (mean score 7.1), readability of the text (mean score 6.8), and use of terminology/abbreviations (mean score 6.75). CONCLUSIONS: Collaborating with health care professionals to develop and refine a graphical interface for visualizing patients' health data from smartwatches revealed that the key elements of the interface were acceptable. The implementation of such data from smartwatches and other mobile devices within electronic health records should consider the opinions of key stakeholders as the development of this platform progresses.

19.
Exp Gerontol ; 142: 111123, 2020 12.
Artigo em Inglês | MEDLINE | ID: mdl-33191210

RESUMO

Aging is the primary risk factor for functional decline; thus, understanding and preventing disability among older adults has emerged as an important public health challenge of the 21st century. The science of gerontology - or geroscience - has the practical purpose of "adding life to the years." The overall goal of geroscience is to increase healthspan, which refers to extending the portion of the lifespan in which the individual experiences enjoyment, satisfaction, and wellness. An important facet of this goal is preserving mobility, defined as the ability to move independently. Despite this clear purpose, this has proven to be a challenging endeavor as mobility and function in later life are influenced by a complex interaction of factors across multiple domains. Moreover, findings over the past decade have highlighted the complexity of walking and how targeting multiple systems, including the brain and sensory organs, as well as the environment in which a person lives, can have a dramatic effect on an older person's mobility and function. For these reasons, behavioral interventions that incorporate complex walking tasks and other activities of daily living appear to be especially helpful for improving mobility function. Other pharmaceutical interventions, such as oxytocin, and complementary and alternative interventions, such as massage therapy, may enhance physical function both through direct effects on biological mechanisms related to mobility, as well as indirectly through modulation of cognitive and socioemotional processes. Thus, the purpose of the present review is to describe evolving interventional approaches to enhance mobility and maintain healthspan in the growing population of older adults in the United States and countries throughout the world. Such interventions are likely to be greatly assisted by technological advances and the widespread adoption of virtual communications during and after the COVID-19 era.


Assuntos
COVID-19/epidemiologia , Geriatria , Desempenho Físico Funcional , SARS-CoV-2 , Idoso , Envelhecimento/fisiologia , Ritmo Circadiano/fisiologia , Cognição , Terapias Complementares , Humanos , Pessoa de Meia-Idade , Limitação da Mobilidade , Transtornos do Sono-Vigília/complicações
20.
Bioinformatics ; 24(13): i86-95, 2008 Jul 01.
Artigo em Inglês | MEDLINE | ID: mdl-18586749

RESUMO

UNLABELLED: Recurrent chromosomal alterations provide cytological and molecular positions for the diagnosis and prognosis of cancer. Comparative genomic hybridization (CGH) has been useful in understanding these alterations in cancerous cells. CGH datasets consist of samples that are represented by large dimensional arrays of intervals. Each sample consists of long runs of intervals with losses and gains. In this article, we develop novel SVM-based methods for classification and feature selection of CGH data. For classification, we developed a novel similarity kernel that is shown to be more effective than the standard linear kernel used in SVM. For feature selection, we propose a novel method based on the new kernel that iteratively selects features that provides the maximum benefit for classification. We compared our methods against the best wrapper-based and filter-based approaches that have been used for feature selection of large dimensional biological data. Our results on datasets generated from the Progenetix database, suggests that our methods are considerably superior to existing methods. AVAILABILITY: All software developed in this article can be downloaded from http://plaza.ufl.edu/junliu/feature.tar.gz.


Assuntos
Algoritmos , Mapeamento Cromossômico/métodos , Dosagem de Genes/genética , Análise de Sequência com Séries de Oligonucleotídeos/métodos , Reconhecimento Automatizado de Padrão/métodos , Alinhamento de Sequência/métodos , Análise de Sequência de DNA/métodos , Inteligência Artificial
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