Comparative transcriptome and histological analyses provide insights into the skin pigmentation in Minxian black fur sheep (Ovis aries).

BACKGROUND: Minxian black fur (MBF) sheep are found in the northwestern parts of China. These sheep have developed several special traits. Skin color is a phenotype subject to strong natural selection and diverse skin colors are likely a consequence of differences in gene regulation. METHODS: Skin structure, color differences, and gene expression (determined by RNA sequencing) were evaluated the Minxian black fur and Small-tail Han sheep (n = 3 each group), which are both native Chinese sheep breeds. RESULTS: Small-tail Han sheep have a thicker skin and dermis than the Minxian black fur sheep (P < 0.01); however, the quantity of melanin granules is greater (P < 0.01) in Minxian black fur sheep with a more extensive distribution in skin tissue and hair follicles. One hundred thirty-three differentially expressed genes were significantly associated with 37 ontological terms and two critical KEGG pathways for pigmentation ("tyrosine metabolism" and "melanogenesis" pathways). Important genes from those pathways with known involvement in pigmentation included OCA2 melanosomal transmembrane protein (OCA2), dopachrome tautomerase (DCT), tyrosinase (TYR) and tyrosinase related protein (TYRP1), melanocortin 1 receptor (MC1R), and premelanosome protein (PMEL). The results from our histological and transcriptome analyses will form a foundation for additional investigation into the genetic basis and regulation of pigmentation in these sheep breeds.

Genome-wide DNA methylation alteration in prenatally stressed Brahman heifer calves with the advancement of age.

Possible phenotypic impairments associated with maternal stress during gestation in beef cattle may be explained by epigenetic effects. This study examined the impact of prenatal transportation stress on DNA methylation of lymphocytes of Brahman cows over the first 5 years of life. Methylation analysis through reduced representation bisulphite sequencing was conducted on DNA from lymphocytes from 28 paired samples from 6 prenatally stressed (PNS) and 8 control (Control) females obtained initially when they were 28 days of age and 5 years of age. There were 14,386 CpG (C = cytosine; p = phosphate; G = guanine) sites differentially methylated (P < 0.01) in 5-yr-old Control cows compared to their lymphocyte DNA at 28 days of age, this number was slightly decreased in 5-yr-old PNS with 13,378 CpG sites. Only 2,749 age-related differentially methylated CpG sites were seen within PNS females. There were 2,637 CpG sites differentially methylated (P < 0.01) in PNS cows relative to Controls at 5 years of age. There were differentially methylated genes in 5-yr-old cows that contributed similarly to altered gene pathways in both treatment groups. Canonical pathways altered in PNS compared to Control cows at 5 years of age were mostly related to development and growth, nervous system development and function, and immune response. Prenatal stress appeared to alter the epigenome in Brahman cows compared to Control at 5 years of age, which implies a persistent intervention in DNA methylation in lymphocytes, and may confer long-lasting effects on gene expression, and consequently relevant phenotypic changes.

Feed efficiency of tropically adapted cattle when fed in winter or spring in a temperate location.

Earlier work has shown that young tropically adapted cattle do not gain weight as rapidly as temperately adapted cattle during the winter in Oklahoma. The objective for this study was to determine whether efficiency of gains was also affected in tropically adapted cattle and whether efficiency was consistent over different seasons. Over 3 yr, 240 straightbred and crossbred steers (F1 and 3-way crosses) of Angus, Brahman, or Romosinuano breeding, born in Brooksville, FL, were transported to El Reno, OK in October and fed in 2 phases to determine performance, individual intake, and efficiency. Phase 1 (WIN) began in November after a 28-d recovery from shipping stress and phase 2 (SS) began in March, 28 d following completion of WIN each year. The diet for WIN was a grower diet (14% CP, 1.10 Mcal NEg/kg) and that for the SS was a feedlot diet (12.8% CP; 1.33 Mcal NEg/kg). After a 14-d adjustment to diet and facilities, intake trials were conducted over a period of 56 to 162 d for determination of intake and gain for efficiency. Body weights were recorded at approximately 14-d intervals, and initial BW, median BW, and ADG were determined from individual animal regressions of BW on days on feed. Individual daily DMI was then regressed by phase on median BW and ADG, and residuals of regression were recorded as residual feed intake (RFI). Similarly, daily gain was regressed by phase on median BW and DMI, and errors of regression were recorded as residual gain (RADG). Gain to feed (G:F) was also calculated. The statistical model to evaluate ADG, DMI, and efficiency included fixed effects of dam age (3 to 4, 5, 6 to 10, and >10 yr), harvest group (3 per year), age on test, and a nested term DT (ST × XB), where DT is the proportion tropical breeding of dam (0, 0.5, or 1), ST is the proportion tropical breeding of sire (1 or 0), and XB whether the calf was straightbred or crossbred. Year of record, sire (ST × XB), and pen were random effects. Preweaning ADG and BW increased (P < 0.05) with level of genetic tropical influence, but during the WIN, ADG and efficiency estimated by G:F and RADG declined (P < 0.05). Tropical influence had little effect on RFI during the WIN, or on most traits during SS. In general, during SS, crossbred steers gained faster and were more efficient by G:F and RADG (P < 0.05) than straightbred steers. Simple correlations, both Pearson and Spearman, between RFI in WIN and RFI in SS were 0.51 (P < 0.001), whereas that for RADG was 0.17 (P < 0.01).

Characterization of intronic SNP located in candidate genes influencing cattle temperament

The objective of this study was to evaluate the effect of intronic single nucleotide polymorphisms (SNP) on temperament traits in a Brahman cattle population. The SNP located in CACNG4, EXOC4, NRXN3, and SLC9A4 candidate genes were genotyped in 250 animals with temperament records of exit velocity, pen score, and temperament score. Rs3423464051:G>A in the CACNG4 gene was associated with exit velocity and temperament score. An in silico analysis of the five intronic SNP showed that alternative alleles of CACNG4-rs3423464051, EXOC4-rs109393235, and SLC9A4-rs109722627 SNP could alter branch point sites during splicing, while a protein-protein interaction network analysis demonstrated a GRIA2 gene-mediated interaction between CACNG4 and NRXN3. The present results support previously reported evidence regarding bovine temperament-related candidate genes, particularly CACNG4, which is a confirmed candidate gene in need of more detailed analyses to reveal its role in temperament-related traits.(AU)