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1.
Environ Monit Assess ; 196(5): 419, 2024 Apr 03.
Artigo em Inglês | MEDLINE | ID: mdl-38570389

RESUMO

Seasonally astatic aquatic habitats are important ecologically, municipally, and agriculturally. Regulatory agencies and conservation organizations have developed various plans for protecting or constructing temporary wetlands, resulting in habitat monitoring requirements, particularly as relates to restoration and constructed habitats. Unfortunately, there has been no effort to develop a unified, consistent method for wetland biological monitoring. This is particularly true for habitats important in a regulatory sense. We conducted macroinvertebrate bioassessment in constructed vernal pools in California, USA, to assess habitat functionality. This tool is modified from aquatic bioassessment; a primary tool of regulatory agencies in measuring habitat health and water quality and should be equally applicable to seasonally astatic wetlands globally.


Assuntos
Ecossistema , Monitoramento Ambiental , Áreas Alagadas , Estações do Ano , Qualidade da Água
2.
Environ Monit Assess ; 196(5): 465, 2024 Apr 22.
Artigo em Inglês | MEDLINE | ID: mdl-38647723

RESUMO

Seasonally astatic aquatic habitats are important ecologically, municipally, and agriculturally. Regulatory agencies and conservation organizations have developed various plans for protecting or constructing temporary wetlands, resulting in habitat monitoring requirements, particularly as relates to restoration and constructed habitats. Unfortunately, there has been no effort to develop a unified, consistent method for wetland biological monitoring. In Part I, we presented a quantifiable, replicable method for assessing seasonally astatic wetlands, which would allow for direct comparison between individual wetlands, wetland sites, and wetland types. Here in Part II, we apply the method and present the results from more than a decade of a data on two disparate sites that support California vernal pool habitats. These habitats include natural, restored, and constructed vernal pools. Our results demonstrate that the method we present yields reliable, statistically useful, and actionable data and provides a better method for assessing astatic wetland ecological health and the persistence of federally listed vernal pool crustaceans than other methods so far employed.


Assuntos
Ecossistema , Monitoramento Ambiental , Invertebrados , Estações do Ano , Áreas Alagadas , Monitoramento Ambiental/métodos , Animais , California , Conservação dos Recursos Naturais/métodos , Organismos Aquáticos , Monitoramento Biológico/métodos
3.
J Chem Inf Model ; 60(12): 5832-5852, 2020 12 28.
Artigo em Inglês | MEDLINE | ID: mdl-33326239

RESUMO

We present a supercomputer-driven pipeline for in silico drug discovery using enhanced sampling molecular dynamics (MD) and ensemble docking. Ensemble docking makes use of MD results by docking compound databases into representative protein binding-site conformations, thus taking into account the dynamic properties of the binding sites. We also describe preliminary results obtained for 24 systems involving eight proteins of the proteome of SARS-CoV-2. The MD involves temperature replica exchange enhanced sampling, making use of massively parallel supercomputing to quickly sample the configurational space of protein drug targets. Using the Summit supercomputer at the Oak Ridge National Laboratory, more than 1 ms of enhanced sampling MD can be generated per day. We have ensemble docked repurposing databases to 10 configurations of each of the 24 SARS-CoV-2 systems using AutoDock Vina. Comparison to experiment demonstrates remarkably high hit rates for the top scoring tranches of compounds identified by our ensemble approach. We also demonstrate that, using Autodock-GPU on Summit, it is possible to perform exhaustive docking of one billion compounds in under 24 h. Finally, we discuss preliminary results and planned improvements to the pipeline, including the use of quantum mechanical (QM), machine learning, and artificial intelligence (AI) methods to cluster MD trajectories and rescore docking poses.


Assuntos
Antivirais/química , Tratamento Farmacológico da COVID-19 , SARS-CoV-2/efeitos dos fármacos , Proteínas não Estruturais Virais/química , Inteligência Artificial , Sítios de Ligação , Simulação por Computador , Bases de Dados de Compostos Químicos , Desenho de Fármacos , Avaliação Pré-Clínica de Medicamentos , Humanos , Simulação de Acoplamento Molecular , Conformação Proteica , Glicoproteína da Espícula de Coronavírus/química , Relação Estrutura-Atividade
4.
Mol Phylogenet Evol ; 131: 164-180, 2019 02.
Artigo em Inglês | MEDLINE | ID: mdl-30423441

RESUMO

Atyid shrimps, a key component of tropical freshwater ecosystems, face multiple anthropogenic threats and thus need special attention. With more than 300 described species, the genus Caridina is the most speciose of all the Caridea infra-order. Caridina spp. occupy diverse habitats in tropical freshwaters of the Indo-West Pacific region. Several species complexes have been recognized, based on common morphological features, but little is known about how well these morphological characteristics align with phylogenetic characteristics. Furthermore, no phylogeny of the genus Caridina published so far has provided well-resolved and supported relationships among different species, thus impeding the possibility of proposing evolutionary hypotheses. In this study we used next generation sequencing (NGS) to provide new insights into the phylogenetic relationships among the genus Caridina, focusing on two complexes: 'Caridina nilotica' and 'Caridina weberi'. We collected 92 specimens belonging to these two groups from most of their known geographical range, representing 50 species, for which we sequenced seven mitochondrial genes and two nuclear markers using ion torrent NGS. We performed a phylogenetic analysis, which yielded the first well-supported tree for the genus Caridina. On this tree were mapped the geographic ranges and the habitats used by the different species, and a time calibration was tested. We found the driving factors that most likely account for separation of clades are differences in habitat and to a lesser extent geography. This work provides new insights into the taxonomy of this group and identifies opportunities for further studies in order to fill knowledge gaps that currently impede the management and conservation of atyid species.


Assuntos
Decápodes/classificação , Ecossistema , Filogenia , Filogeografia , Animais , Teorema de Bayes , Calibragem , Fatores de Tempo
5.
Electrophoresis ; 40(22): 2921-2928, 2019 11.
Artigo em Inglês | MEDLINE | ID: mdl-31475363

RESUMO

Application of a microfluidic CE* device for CZE-MS allows for fast, rapid, and in-depth analysis of large sample sets. This microfluidic CZE-MS device, the 908 Devices ZipChip, involves minimal sample preparation and is ideal for small cation analytes, such as alkaloids. Here, we evaluated the microfluidic device for the analysis of alkaloids from Lobelia cardinalis hairy root cultures. Extracts from wild-type, transgenic, and selected mutant plant cultures were analyzed and data batch processed using the mass spectral processing software MZmine2 and the statistical software Prism 8. In total 139 features were detected as baseline resolved peaks via the MZmine2 software optimized for the electrophoretic separations. Statistically significant differences in the relative abundance of the primary alkaloid lobinaline (C27 H34 N2 ), along with several putative "lobinaline-like" molecules were observed utilizing this approach. Additionally, a method for performing both targeted and untargeted MS/MS experiments using the microfluidic device was developed and evaluated. Coupling data-processing software with CZE-MS data acquisition has enabled comprehensive metabolomic profiles from plant cell cultures to be constructed within a single working day.


Assuntos
Alcaloides/análise , Eletroforese Capilar/métodos , Lobelia , Plantas Geneticamente Modificadas , Espectrometria de Massas em Tandem/métodos , Biologia Computacional , Limite de Detecção , Modelos Lineares , Lobelia/química , Lobelia/citologia , Técnicas Analíticas Microfluídicas/métodos , Células Vegetais/química , Extratos Vegetais/química , Plantas Geneticamente Modificadas/química , Plantas Geneticamente Modificadas/citologia , Reprodutibilidade dos Testes
6.
Proc Biol Sci ; 285(1885)2018 08 22.
Artigo em Inglês | MEDLINE | ID: mdl-30135168

RESUMO

Understanding the evolution of Tetraconata or Pancrustacea-the clade that includes crustaceans and insects-requires a well-resolved hypothesis regarding the relationships within and among its constituent taxa. Here, we assembled a taxon-rich phylogenomic dataset focusing on crustacean lineages based solely on genomes and new-generation Illumina-generated transcriptomes, including 89 representatives of Tetraconata. This constitutes, to our knowledge, the first phylogenomic study specifically addressing internal relationships of Malacostraca (with 26 species included) and Branchiopoda (36 species). Seven matrices comprising 81-684 orthogroups and 17 690-242 530 amino acid positions were assembled and analysed under five different analytical approaches. To maximize gene occupancy and to improve resolution, taxon-specific matrices were designed for Malacostraca and Branchiopoda. Key tetraconatan taxa (i.e. Oligostraca, Multicrustacea, Branchiopoda, Malacostraca, Thecostraca, Copepoda and Hexapoda) were monophyletic and well supported. Within Branchiopoda, Phyllopoda, Diplostraca, Cladoceromorpha and Cladocera were monophyletic. Within Malacostraca, the clades Eumalacostraca, Decapoda and Reptantia were well supported. Recovery of Caridoida or Peracarida was highly dependent on the analysis for the complete matrix, but it was consistently monophyletic in the malacostracan-specific matrices. From such examples, we demonstrate that taxon-specific matrices and particular evolutionary models and analytical methods, namely CAT-GTR and Dayhoff recoding, outperform other approaches in resolving certain recalcitrant nodes in phylogenomic analyses.


Assuntos
Crustáceos/classificação , Filogenia , Animais , Proteínas de Artrópodes/análise , Crustáceos/genética , Análise de Sequência de RNA
7.
Oecologia ; 188(4): 1081-1093, 2018 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-30353225

RESUMO

Organisms evolve to maintain fitness across generations, while short-term fitness in stochastic habitats such as temporary wetlands may be highly varied. As typical temporary wetland inhabitants, large branchiopods rely on bet hedging hatching that helps them survive throughout generations. An optimal hatching rate is predicted to be approximate to the successful reproduction probability (SRP). We tested the difference between hatching rate and SRP of large branchiopods Branchinella kugenumaensis and Eulimnadia braueriana in a temporary wetland in Taiwan, through field surveys and climatic records to evaluate their SRP. Comparisons were performed under two proposed scenarios, where a population's hatching was bet hedged for a hydroperiod or for a wet season (with several hydroperiods), respectively. Population size fluctuations were simulated for these two scenarios under assumed egg mortalities and reproductive replenishments. Results showed that the hatching rates only fitted to SRP for E. braueriana under the scenario of bet hedging on a wet season, not for B. kugenumaensis, nor for both species under the scenario of bet hedging on a hydroperiod. Bet hedging on a wet season would have a smaller range of population size fluctuation and a lower rate of population size decrease. This implies that large branchiopods adopt a conservative hatching strategy, lowering the hatching fraction in each hydroperiod to reduce long-term egg bank size fluctuation. Bet hedging strategies could occur during other life cycle stages, coexist with other life history strategies, and lead to the diversified hatching fraction distribution rather than a single, optimal fraction throughout hydroperiods.


Assuntos
Características de História de Vida , Áreas Alagadas , Animais , Crustáceos , Reprodução , Taiwan
8.
Public Health ; 128(12): 1049-58, 2014 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-25443135

RESUMO

OBJECTIVES: In the context of public health, risk governance (or risk analysis) is a framework for the assessment and subsequent management and/or control of the danger posed by an identified disease threat. Generic frameworks in which to carry out risk assessment have been developed by various agencies. These include monitoring, data collection, statistical analysis and dissemination. Due to the inherent complexity of disease systems, however, the generic approach must be modified for individual, disease-specific risk assessment frameworks. STUDY DESIGN: The analysis was based on the review of the current risk assessments of vector-borne diseases adopted by the main Public Health organisations (OIE, WHO, ECDC, FAO, CDC etc…). METHODS: Literature, legislation and statistical assessment of the risk analysis frameworks. RESULTS: This review outlines the need for the development of a general public health risk assessment method for vector-borne diseases, in order to guarantee that sufficient information is gathered to apply robust models of risk assessment. Stochastic (especially spatial) methods, often in Bayesian frameworks are now gaining prominence in standard risk assessment procedures because of their ability to assess accurately model uncertainties. CONCLUSIONS: Risk assessment needs to be addressed quantitatively wherever possible, and submitted with its quality assessment in order to enable successful public health measures to be adopted. In terms of current practice, often a series of different models and analyses are applied to the same problem, with results and outcomes that are difficult to compare because of the unknown model and data uncertainties. Therefore, the risk assessment areas in need of further research are identified in this article.


Assuntos
Doenças Transmissíveis/transmissão , Vetores de Doenças , Administração em Saúde Pública , Animais , Teorema de Bayes , Humanos , Modelos Teóricos , Medição de Risco/métodos
9.
Zootaxa ; (3802): 75-84, 2014 May 23.
Artigo em Inglês | MEDLINE | ID: mdl-24870993

RESUMO

We present and describe the fairy shrimp Streptocephalus sahyadriensis sp. nov. from the Western Ghats of India. This species is most similar to S. simplex Gurney, 1906 and S. dichotomus Baird, 1860 sharing similar basic antennal appendage morphology. However, S. sahyadriensis sp. nov. differs in the form of the ornamentation on the peduncle and the arrangement and form of spines on the antennal appendage. The three species also have different egg surface morphologies. The Asian species of Streptocephalus are discussed and a key to species is provided.


Assuntos
Anostraca/anatomia & histologia , Anostraca/química , Animais , Anostraca/crescimento & desenvolvimento , Anostraca/ultraestrutura , Feminino , Índia , Masculino , Microscopia Eletrônica de Varredura , Óvulo/ultraestrutura
10.
Med Phys ; 51(8): 5663-5671, 2024 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-38669481

RESUMO

BACKGROUND: Water phantoms are required to perform reference dosimetry and beam quality measurements but there are no published studies about the size requirements for such phantoms. PURPOSE: To investigate, using Monte Carlo techniques, the size requirements for water phantoms used in reference dosimetry and/or to measure the beam quality specifiers % d d ( 10 ) x $\%dd(10)_{\sf x}$ and T P R 10 20 $TPR^{20}_{10}$ . METHODS: The EGSnrc application DOSXYZnrc is used to calculate D ( 10 ) $D(10)$ , the dose per incident fluence at 10 cm depth in a water phantom irradiated by incident 10 × 10 cm 2 $10\,\times \,10 \, {\rm {cm}}^{2}$   beams of 60 Co $^{60}{\rm {Co}}$   or 6 MV photons. The water phantom dimensions are varied from 30 × 30 × 40 cm 3 $30 \,\times \, 30 \,\times \, 40 \, {\rm {cm}}^3$ to 15 × 15 × 22 cm 3 $15 \,\times \, 15 \,\times \, 22 \, {\rm {cm}}^3$ and occasionally smaller. The % d d ( 10 ) x $\%dd(10)_{\sf x}$ and T P R 10 20 $TPR^{20}_{10}$ values are also calculated with care being taken to distinguish T P R 10 20 $TPR^{20}_{10}$ results when using Method A (changing depth of water in phantom) and Method B (moving entire phantom). Typical statistical uncertainties are 0.03%. RESULTS: Phantom dimensions have only minor effects for phantoms larger than 20 × 20 × 25 cm 3 $20 \,\times \, 20 \,\times \, 25 \, {\rm {cm}}^3$ . A table of corrections to the dose at 10 cm depth in 10 × 10 cm 2 $10 \,\times \, 10 \, {\rm {cm}}^{2}$   beams of 60 Co $^{60}{\rm {Co}}$   or 6 MV photons are provided and range from no correction to 0.75% for a 60 Co $^{60}{\rm {Co}}$  beam incident on a 20 × 20 × 15 cm 3 $20 \,\times \, 20 \,\times \, 15 \, {\rm {cm}}^3$ phantom. There can be distinct differences in the T P R 10 20 $TPR^{20}_{10}$ values measured using Method A or Method B, especially for smaller phantoms. It is explicitly demonstrated that, within ± $\pm$ 0.15%, T P R 10 20 $TPR^{20}_{10}$ values for a 30 × 30 × 30 cm 3 $30 \,\times \, 30 \,\times \, 30 \, {\rm {cm}}^3$ phantom measured using Method A or B are independent of source detector distance between 40 and 200 cm. CONCLUSIONS: The phantom sizes recommended in the TG-51 and IAEA TRS-398 reference dosimetry protocols are adequate for accurate reference dosimetry and in some cases are even conservative. Correction factors are necessary for accurate measurement of the dose at 10 cm depth in smaller phantoms and these factors are provided. Very accurate beam quality specifiers are not required for reference dosimetry itself, but for specifying beam stability and characteristics it is important to specify phantom sizes and also the method used for T P R 10 20 $TPR^{20}_{10}$  measurements.


Assuntos
Método de Monte Carlo , Imagens de Fantasmas , Fótons , Radiometria , Água , Radiometria/instrumentação , Padrões de Referência
11.
J Econ Entomol ; 117(4): 1235-1241, 2024 Aug 12.
Artigo em Inglês | MEDLINE | ID: mdl-38970358

RESUMO

Insects are a promising source of high-quality protein, and the insect farming industry will lead to higher sustainability when it overcomes scaling up, cost effectiveness, and automation. In contrast to insect farming (raising and breeding insects as livestock), wild insect harvesting (collecting agricultural insect pests), may constitute a simple sustainable animal protein supplementation strategy. For wild harvest to be successful sufficient insect biomass needs to be collected while simultaneously avoiding the collection of nontarget insects. We assessed the performance of the USDA Biomass Harvest Trap (USDA-BHT) device to collect flying insect biomass and as a mosquito surveillance tool. The USDA-BHT device was compared to other suction traps commonly used for mosquito surveillance (Centers for Disease Control and Prevention (CDC) light traps, Encephalitis virus surveillance traps, and Biogents Sentinel traps). The insect biomass harvested in the USDA-BHT was statistically higher than the one harvested in the other traps, however the mosquito collections between traps were not statistically significantly different. The USDA-BHT collected some beneficial insects, although it was observed that their collection was minimized at night. These findings coupled with the fact that sorting time to separate the mosquitoes from the other collected insects was significantly longer for the USDA-BHT, indicate that the use of this device for insect biomass collection conflicts with its use as an efficient mosquito surveillance tool. Nevertheless, the device efficiently collected insect biomass, and thus can be used to generate an alternative protein source for animal feed.


Assuntos
Biomassa , Animais , Estados Unidos , United States Department of Agriculture , Controle de Mosquitos/instrumentação , Culicidae , Insetos
12.
Proc Natl Acad Sci U S A ; 107(25): 11217-22, 2010 Jun 22.
Artigo em Inglês | MEDLINE | ID: mdl-20534566

RESUMO

Knowledge of cloud and precipitation formation processes remains incomplete, yet global precipitation is predominantly produced by clouds containing the ice phase. Ice first forms in clouds warmer than -36 degrees C on particles termed ice nuclei. We combine observations from field studies over a 14-year period, from a variety of locations around the globe, to show that the concentrations of ice nuclei active in mixed-phase cloud conditions can be related to temperature and the number concentrations of particles larger than 0.5 microm in diameter. This new relationship reduces unexplained variability in ice nuclei concentrations at a given temperature from approximately 10(3) to less than a factor of 10, with the remaining variability apparently due to variations in aerosol chemical composition or other factors. When implemented in a global climate model, the new parameterization strongly alters cloud liquid and ice water distributions compared to the simple, temperature-only parameterizations currently widely used. The revised treatment indicates a global net cloud radiative forcing increase of approximately 1 W m(-2) for each order of magnitude increase in ice nuclei concentrations, demonstrating the strong sensitivity of climate simulations to assumptions regarding the initiation of cloud glaciation.


Assuntos
Atmosfera , Clima , Água/química , Aerossóis , Simulação por Computador , Bases de Dados Factuais , Gelo , Modelos Teóricos , Tamanho da Partícula , Física/métodos , Reprodutibilidade dos Testes , Temperatura
13.
J Econ Entomol ; 106(2): 899-904, 2013 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-23786080

RESUMO

Eucolaspis sp. "Hawke's Bay" (Chrysomelidae: Eumolpinae) is a pest that inflicts huge economic loss in many organic apple (Malus domestica Borkh.) orchards in New Zealand. The timing of control methods for this pest has been shown to be crucial for success. To aid in planning control programs, we studied threshold temperature and degree-days required for the development of Eucolaspis sp. "Hawke's Bay" pupae and modeled adult emergence in the field. Pupal development was observed at three constant temperatures. Pupae required 237.0 +/- 21.67 degree-days above lower threshold temperature of 4.7 degrees C +/- 0.89 degrees C to develop into adults. The emergence of adults was modeled with these thermal values and the model was tested for accuracy with field data. The model performed well with a precision of +/- 4 d. The proposed phenology model has wide applicability in monitoring and planning pest control measures.


Assuntos
Besouros/crescimento & desenvolvimento , Controle de Insetos , Animais , Malus , Modelos Biológicos , Nova Zelândia , Pupa/crescimento & desenvolvimento , Temperatura
14.
Nat Genet ; 20(2): 143-8, 1998 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-9771706

RESUMO

Wolfram syndrome (WFS; OMIM 222300) is an autosomal recessive neurodegenerative disorder defined by young-onset non-immune insulin-dependent diabetes mellitus and progressive optic atrophy. Linkage to markers on chromosome 4p was confirmed in five families. On the basis of meiotic recombinants and disease-associated haplotypes, the WFS gene was localized to a BAC/P1 contig of less than 250 kb. Mutations in a novel gene (WFS1) encoding a putative transmembrane protein were found in all affected individuals in six WFS families, and these mutations were associated with the disease phenotype. WFS1 appears to function in survival of islet beta-cells and neurons.


Assuntos
Cromossomos Humanos Par 4 , Proteínas de Membrana/genética , Mutação , Síndrome de Wolfram/genética , Adulto , Sequência de Bases , Criança , Clonagem Molecular , Feminino , Ligação Genética , Haplótipos , Humanos , Masculino , Repetições de Microssatélites , Dados de Sequência Molecular , Linhagem , Polimorfismo Genético
15.
Nat Genet ; 25(4): 440-3, 2000 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-10932191

RESUMO

As the human genome project approaches completion, the challenge for mammalian geneticists is to develop approaches for the systematic determination of mammalian gene function. Mouse mutagenesis will be a key element of studies of gene function. Phenotype-driven approaches using the chemical mutagen ethylnitrosourea (ENU) represent a potentially efficient route for the generation of large numbers of mutant mice that can be screened for novel phenotypes. The advantage of this approach is that, in assessing gene function, no a priori assumptions are made about the genes involved in any pathway. Phenotype-driven mutagenesis is thus an effective method for the identification of novel genes and pathways. We have undertaken a genome-wide, phenotype-driven screen for dominant mutations in the mouse. We generated and screened over 26,000 mice, and recovered some 500 new mouse mutants. Our work, along with the programme reported in the accompanying paper, has led to a substantial increase in the mouse mutant resource and represents a first step towards systematic studies of gene function in mammalian genetics.


Assuntos
Genes/fisiologia , Genoma , Mutagênese/genética , Animais , Animais Recém-Nascidos , Mapeamento Cromossômico , Cruzamentos Genéticos , Criopreservação , Etilnitrosoureia/farmacologia , Feminino , Fertilização in vitro , Genes/efeitos dos fármacos , Genes/genética , Testes Hematológicos , Masculino , Camundongos , Camundongos Endogâmicos BALB C , Camundongos Endogâmicos C3H , Atividade Motora/genética , Mutagênese/efeitos dos fármacos , Mutagênicos/farmacologia , Mutação , Fenótipo , Fatores de Tempo , Desmame
16.
Zootaxa ; 3609: 319-26, 2013 Jan 30.
Artigo em Inglês | MEDLINE | ID: mdl-24699594

RESUMO

Chirocephalus soulukliensis, an insular new species of fairy shrimp, is described from the Soulukli Wetland in Golestan National Park in northeastern Iran. The new species shares several characters with the loosely organized "Pristicephalus" group. It is readily separated from all congeners by the short, monolamellar form of the antennal appendage, which is un-armed, the distally expanded form of the apophyses, and the sinuate form of the second antennal distal antennomere.


Assuntos
Anostraca/anatomia & histologia , Anostraca/classificação , Animais , Feminino , Irã (Geográfico) , Masculino
17.
Zootaxa ; 3694: 249-61, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-26312287

RESUMO

We present a checklist of the large branchiopod crustaceans of Idaho, Oregon and Washington, USA. New distributional records are presented for most species, including the first records of Branchinecta constricta Rogers, 2006 and Lepidurus cryptus Rogers, 2001 from Idaho, the first record of B. oriena Belk & Rogers 2002 from Oregon, the first record of B. mackini Dexter, 1956 and Artemiafranciscana Kellogg, 1906 co-occurring, and the first record of L. cryptus from Washington. Furthermore, we present the first record of Eulimnadia diversa Mattox, 1937 from west of the continental divide, which we interpret as an accidental introduction. In 1959, Lynch collected a new fairy shrimp species from Washington, deposited that material in the US National Museum, labeled "muddy fairy shrimp, Branchinecta lutulenta", but never described it. Numerous efforts have been made to rediscover extant populations since 1999. We rediscovered this species in 2011, from two small pools from the vicinity of Lynch's original collection site, which appears to have been destroyed. Branchinecta lutulenta sp. nov. is most closely related to B. lindahli Packard, 1883 and B. oterosanvicentei Obregón-Barboza et al., 2002. Branchinecta lutulenta sp. nov. is readily separable from all other Branchinecta species by the form of the male second antennal distal antennomere and the ornamentation of the female dorsum.


Assuntos
Anostraca/classificação , Estruturas Animais/anatomia & histologia , Estruturas Animais/crescimento & desenvolvimento , Animais , Anostraca/anatomia & histologia , Anostraca/crescimento & desenvolvimento , Tamanho Corporal , Lista de Checagem , Feminino , Idaho , Masculino , Oregon , Tamanho do Órgão , Washington
18.
Zookeys ; 1168: 355-366, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-37448484

RESUMO

The fairy shrimp genus Parartemiopsis Rogers, 2005 currently contains a single species reported from Russia and Mongolia. In 2013, an unidentified Parartemiopsis population was reported from the eastern margin of the Tibetan Plateau in China's Yunnan Province, from Patatson National Park in Shangri-La County. Here, we describe the Chinese populations as a new species, Parartemiopsisshangrilaensissp. nov. This new species is distinguished from its congener, P.longicornis (Smirnov, 1930), by the form of the male second antennae and the gonopod. The discovery of P.shangrilaensissp. nov. extends the known distribution of the genus, and more Parartemiopsis species may be found in the future. We present a key to the genera and species of Chirocephalidae in China as an aid to future research.

19.
Med Phys ; 50(3): 1928-1941, 2023 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-36542404

RESUMO

PURPOSE: To update and extend version 2 of the Carleton Laboratory for Radiotherapy Physics (CLRP) TG-43 dosimetry database (CLRP_TG43v2) for high-energy (HE, ≥50 keV) brachytherapy sources (1 169 Yb, 23 192 Ir, 5 137 Cs, and 4 60 Co) using egs_brachy, an open-source EGSnrc application. A comprehensive dataset of TG-43 parameters is compiled, including detailed source descriptions, dose-rate constants, radial dose functions, 1D and 2D anisotropy functions, along-away dose-rate tables, Primary and Scatter Separated (PSS) dose tables, and mean photon energies escaping each source. The database also documents the source models which are freely distributed with egs_brachy. ACQUISITION AND VALIDATION METHODS: Datasets are calculated after a recoding of the source geometries using the egs++ geometry package and its egs_brachy extensions. Air kerma per history is calculated in a 10 × 10 × $\,{\times}\, 10\,{\times}\,$ 0.05 cm3 voxel located 100 cm from the source along the transverse axis and then corrected for the lateral and thickness dimensions of the scoring voxel to give the air kerma on the central axis at a point 100 cm from the source's mid-point. Full-scatter water phantoms with varying voxel resolutions in cylindrical coordinates are used for dose calculations. Most data (except for 60 Co) are based on the assumption of charged particle equilibrium and ignore the potentially large effects of electron transport very close to the source and dose from initial beta particles. These effects are evaluated for four representative sources. For validation, data are compared to those from CLRP_TG43v1 and published data. DATA FORMAT AND ACCESS: Data are available at https://physics.carleton.ca/clrp/egs_brachy/seed_database_v2 or http://doi.org/10.22215/clrp/tg43v2 including in Excel (.xlsx) spreadsheets, and are presented graphically in comparisons to previously published data for each source. POTENTIAL APPLICATIONS: The CLRP_TG43v2 database has applications in research, dosimetry, and brachytherapy planning. This comprehensive update provides the medical physics community with more precise and in some cases more accurate Monte Carlo (MC) TG-43 dose calculation parameters, as well as fully benchmarked and described source models which are distributed with egs_brachy.


Assuntos
Braquiterapia , Braquiterapia/métodos , Dosagem Radioterapêutica , Radiometria/métodos , Física , Método de Monte Carlo , Planejamento da Radioterapia Assistida por Computador/métodos
20.
Horm Metab Res ; 44(11): 855-60, 2012 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-22893260

RESUMO

There is limited information regarding the use of dried capillary blood spots collected on a filter paper (FP) to test for islet cell antibodies. The aim of this study was to validate the use of dried capillary blood spots collected on a FP for the analysis of islet cell antibodies. FP eluates were tested using both single and combined assay for antibodies to glutamic acid decarboxylase (GADA) and/or to the protein tyrosine phosphatase like IA-2 (IA-2A), and a single assay for antibodies to insulin (IAA). The results were compared with those of serum assays. Ninety-one subjects were studied. Forty had Type 1 diabetes mellitus (T1DM) and 51 were first-degree relatives (FDR) of patients with T1DM. The GADA and IA-2A were measured by radio-binding assays, which utilize 35S-labeled GAD65 and IA-2. IAA was measured by a microtiter plate assay using 125I-labeled insulin. Twenty-six of those with T1DM (65%) and 5 of the FDRs (10%) had at least 1 positive test on the single serum assays. The FP combi-assay for GADA and IA-2A had 97.8% concordance rate when compared with serum single assays for GADA and IA-2A. The concordance rate for individual assays were 96.7% for GADA, and 100% for both IA-2A and IAA There was significant correlation of the antibody levels between FP and serum specimen for all 3 antibodies. We conclude that antibody screening performed using dried capillary blood spots collected on a FP correlates well with serum assays, and provides an easy alternative for population screening.


Assuntos
Autoanticorpos , Diabetes Mellitus Tipo 1/diagnóstico , Teste em Amostras de Sangue Seco/métodos , Glutamato Descarboxilase/imunologia , Anticorpos Anti-Insulina , Adolescente , Adulto , Autoanticorpos/sangue , Criança , Pré-Escolar , Diabetes Mellitus Tipo 1/sangue , Feminino , Humanos , Anticorpos Anti-Insulina/sangue , Masculino , Pessoa de Meia-Idade , Adulto Jovem
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