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1.
Appl Environ Microbiol ; 79(7): 2336-48, 2013 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-23377928

RESUMO

In this study, the distribution and regulation of periplasmic and cytoplasmic carbon fluxes in Gluconobacter oxydans 621H with glucose were studied by (13)C-based metabolic flux analysis ((13)C-MFA) in combination with transcriptomics and enzyme assays. For (13)C-MFA, cells were cultivated with specifically (13)C-labeled glucose, and intracellular metabolites were analyzed for their labeling pattern by liquid chromatography-mass spectrometry (LC-MS). In growth phase I, 90% of the glucose was oxidized periplasmically to gluconate and partially further oxidized to 2-ketogluconate. Of the glucose taken up by the cells, 9% was phosphorylated to glucose 6-phosphate, whereas 91% was oxidized by cytoplasmic glucose dehydrogenase to gluconate. Additional gluconate was taken up into the cells by transport. Of the cytoplasmic gluconate, 70% was oxidized to 5-ketogluconate and 30% was phosphorylated to 6-phosphogluconate. In growth phase II, 87% of gluconate was oxidized to 2-ketogluconate in the periplasm and 13% was taken up by the cells and almost completely converted to 6-phosphogluconate. Since G. oxydans lacks phosphofructokinase, glucose 6-phosphate can be metabolized only via the oxidative pentose phosphate pathway (PPP) or the Entner-Doudoroff pathway (EDP). (13)C-MFA showed that 6-phosphogluconate is catabolized primarily via the oxidative PPP in both phases I and II (62% and 93%) and demonstrated a cyclic carbon flux through the oxidative PPP. The transcriptome comparison revealed an increased expression of PPP genes in growth phase II, which was supported by enzyme activity measurements and correlated with the increased PPP flux in phase II. Moreover, genes possibly related to a general stress response displayed increased expression in growth phase II.


Assuntos
Gluconobacter oxydans/genética , Gluconobacter oxydans/metabolismo , Glucose/metabolismo , Metaboloma , Via de Pentose Fosfato/genética , Transcriptoma , Isótopos de Carbono/metabolismo , Cromatografia Líquida , Marcação por Isótopo , Espectrometria de Massas
2.
Appl Environ Microbiol ; 76(13): 4369-76, 2010 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-20453146

RESUMO

Gluconobacter oxydans N44-1, an obligatory aerobic acetic acid bacterium, oxidizes glucose primarily in the periplasm to the end products 2-ketogluconate and 2,5-diketogluconate, with intermediate formation of gluconate. Only a minor part of the glucose (less than 10%) is metabolized in the cytoplasm after conversion to gluconate or after phosphorylation to glucose-6-phosphate via the only functional catabolic routes, the pentose phosphate pathway and the Entner-Doudoroff pathway. This unusual method of glucose metabolism results in a low growth yield. In order to improve it, we constructed mutants of strain N44-1 in which the gene encoding the membrane-bound glucose dehydrogenase was inactivated either alone or together with the gene encoding the cytoplasmic glucose dehydrogenase. The growth and product formation from glucose of the resulting strains, N44-1 mgdH::kan and N44-1 DeltamgdH sgdH::kan, were analyzed. Both mutant strains completely consumed the glucose but produced neither gluconate nor the secondary products 2-ketogluconate and 2,5-diketogluconate. Instead, carbon dioxide formation of the mutants increased by a factor of 4 (N44-1 mgdH::kan) or 5.5 (N44-1 DeltamgdH sgdH::kan), and significant amounts of acetate were produced, presumably by the activities of pyruvate decarboxylase and acetaldehyde dehydrogenase. Most importantly, the growth yields of the two mutants increased by 110% (N44-1 mgdH::kan) and 271% (N44-1 DeltamgdH sgdH::kan). In addition, the growth rates improved by 39% (N44-1 mgdH::kan) and 78% (N44-1 DeltamgdH sgdH::kan), respectively, compared to the parental strain. These results show that the conversion of glucose to gluconate and ketogluconates has a strong negative impact on the growth of G. oxydans.


Assuntos
Biotecnologia/métodos , Deleção de Genes , Engenharia Genética/métodos , Gluconatos/metabolismo , Gluconobacter oxydans/crescimento & desenvolvimento , Glucose 1-Desidrogenase/genética , Glucose/metabolismo , Dióxido de Carbono/metabolismo , Meios de Cultura , Regulação Bacteriana da Expressão Gênica , Gluconobacter oxydans/genética , Gluconobacter oxydans/metabolismo , Mutação
3.
Metab Eng ; 11(3): 178-83, 2009 May.
Artigo em Inglês | MEDLINE | ID: mdl-19558963

RESUMO

The highly productive whole-cell biotransformation of D-fructose to D-mannitol with recombinant, resting cells of Escherichia coli BL21(DE3) requires the combined expression of mdh, fdh and glf which encode mannitol and formate dehydrogenases and a sugar facilitator, respectively. However, long-term stability of the system was restricted, possibly due to loss of the cofactor NAD, high concentrations of formate, formation of CO(2) affecting the internal pH of the cells, accumulation of high intracellular concentrations of D-mannitol, and export of D-mannitol. Downstream of the mdh gene of Leuconostoc pseudomesenteroides, we identified an open reading frame encoding for a putative mannitol permease. The gene was cloned and expressed in E. coli. Biochemical analyses revealed an activity as secondary carrier for D-fructose. Therefore, the carrier was named FupL and participation in D-mannitol transport was excluded. In biotransformation experiments, the productivity of D-mannitol formation obtained with the strain expressing the additional fupL gene was enhanced by 20%.


Assuntos
Proteínas de Bactérias/metabolismo , Dióxido de Carbono/fisiologia , Escherichia coli/metabolismo , Leuconostoc/metabolismo , Manitol/metabolismo , Proteínas de Membrana Transportadoras/metabolismo , NAD/fisiologia , Proteínas de Bactérias/genética , Biotransformação , Escherichia coli/genética , Formiatos/metabolismo , Leuconostoc/genética
4.
Int J Food Microbiol ; 125(1): 91-5, 2008 Jun 30.
Artigo em Inglês | MEDLINE | ID: mdl-17976848

RESUMO

Gluconobacter oxydans is known for causing rapid and incomplete oxidation of a wide range of sugars, sugar acids and sugar alcohols. Therefore, this microorganism is already employed in several biotechnological processes that involve incomplete oxidation of a substrate, e.g. vitamin C or dihydroxyacetone production. To fully exploit the oxidative potential of G. oxydans, characterization of the biological role of gene products is essential. To take advantage of the genome sequence of G. oxydans DSM 2343, based on pBBR1MCS5, we constructed a new cloning and expression vector. The newly established vector pEXGOX will significantly decrease duration of cloning and increase cloning efficiency. It has the following advantages: (i) small size (5.7 kbp); (ii) complete sequence; (iii) variety of unique restriction sites; (iv) direct cloning of PCR products; (v) strong promoter. The pEXGOX plasmid was successfully used to clone G. oxydans genes and has the potential to facilitate studies of gene function of several G. oxydans open reading frames.


Assuntos
Clonagem Molecular , Vetores Genéticos , Gluconobacter oxydans/genética , Plasmídeos , Ácido Acético/metabolismo , Sequência de Bases , DNA Bacteriano/química , DNA Bacteriano/genética , Genes Bacterianos , Gluconobacter oxydans/metabolismo , Dados de Sequência Molecular , Fases de Leitura Aberta
5.
J Biotechnol ; 124(1): 196-205, 2006 Jun 25.
Artigo em Inglês | MEDLINE | ID: mdl-16516325

RESUMO

L-Ascorbic acid has been industrially produced for around 70 years. Over the past two decades, several innovative bioconversion systems have been proposed in order to simplify the long time market-dominating Reichstein method, a largely chemical synthesis by which still a considerable part of L-ascorbic acid is produced. Here, we describe the current state of biotechnological alternatives using bacteria, yeasts, and microalgae. We also discuss the potential for direct production of l-ascorbic acid exploiting novel bacterial pathways. The advantages of these novel approaches competing with current chemical and biotechnological processes are outlined.


Assuntos
Ácido Ascórbico/biossíntese , Bactérias/metabolismo , Biotecnologia/métodos , Engenharia Genética/métodos , Bactérias/genética , Catálise , Eucariotos/genética , Eucariotos/metabolismo , Fermentação , Técnicas In Vitro , Leveduras/genética , Leveduras/metabolismo
6.
Biochim Biophys Acta ; 1698(1): 37-44, 2004 Apr 08.
Artigo em Inglês | MEDLINE | ID: mdl-15063313

RESUMO

1-Deoxy-d-xylulose-5-phosphate reductoisomerase (DXR) is the second enzyme in the non-mevalonate pathway of isoprenoid biosynthesis. The structure of the apo-form of this enzyme from Zymomonas mobilis has been solved and refined to 1.9-A resolution, and that of a binary complex with the co-substrate NADPH to 2.7-A resolution. The subunit of DXR consists of three domains. Residues 1-150 form the NADPH binding domain, which is a variant of the typical dinucleotide-binding fold. The second domain comprises a four-stranded mixed beta-sheet, with three helices flanking the sheet. Most of the putative active site residues are located on this domain. The C-terminal domain (residues 300-386) folds into a four-helix bundle. In solution and in the crystal, the enzyme forms a homo-dimer. The interface between the two monomers is formed predominantly by extension of the sheet in the second domain. The adenosine phosphate moiety of NADPH binds to the nucleotide-binding fold in the canonical way. The adenine ring interacts with the loop after beta1 and with the loops between alpha2 and beta2 and alpha5 and beta5. The nicotinamide ring is disordered in crystals of this binary complex. Comparisons to Escherichia coli DXR show that the two enzymes are very similar in structure, and that the active site architecture is highly conserved. However, there are differences in the recognition of the adenine ring of NADPH in the two enzymes.


Assuntos
Aldose-Cetose Isomerases/química , Complexos Multienzimáticos/química , Oxirredutases/química , Zymomonas/química , Aldose-Cetose Isomerases/metabolismo , Sequência de Aminoácidos , Apoenzimas/química , Sítios de Ligação , Cristalografia por Raios X , Escherichia coli/química , Escherichia coli/enzimologia , Modelos Moleculares , Dados de Sequência Molecular , Complexos Multienzimáticos/metabolismo , NADP/química , NADP/metabolismo , Oxirredutases/metabolismo , Ligação Proteica , Estrutura Quaternária de Proteína , Estrutura Terciária de Proteína , Zymomonas/enzimologia
7.
Microbiology (Reading) ; 142(2): 411-417, 1996 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-33657743

RESUMO

A specific isocitrate lyase (ICL) activity of 0.17 U (mg protein)-1 was detected in cultures of the riboflavin-producing fungus Ashbya gossypii during growth on soybean oil. Enzyme activity was not detectable during growth on glucose [<0.005 U (mg protein)-1], indicating a regulation. The enzyme was purified 108-fold by means of ammonium sulphate fractionation, gel filtration and cation-exchange chromatography. SDS-PAGE of the purified protein showed a homogeneous band with an M r of 66000. The M r of 254000 determined by gel-filtration chromatography indicated a tetrameric structure of the native protein. The enzyme was found to have a pH optimum for the isocitrate cleavage of 7.0, and the K m for threo-DL-isocitrate was determined as 550 µ. Enzyme activity was Mg2+- dependent. In regulation studies ICL was weakly inhibited by central metabolites. A concentration of 10 mM phosphoenolpyruvate or 6-phosphogluconate revealed a residual activity of more than 40%. On the other hand, oxalate (K i: 4 µM) and itaconate (K i: 170 µM) showed a strong inhibition and may therefore be interesting as antimetabolites.

8.
Microbiology (Reading) ; 142(2): 419-426, 1996 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-33657747

RESUMO

Isocitrate lyase (ICL) was assayed during batch cultivations of Ashbya gossypii on soybean oil or glucose as carbon source. On soybean oil, a correlation between enzyme activity and riboflavin synthesis was observed. On glucose as carbon source, riboflavin overproduction started in the late growth phase when glucose was exhausted. ICL activity appeared in parallel and reached a maximum of 0.41 U (mg protein)-1. This suggested synthesis of vitamin B2 from the intracellular reserve fat. ICL specific activity correlated with the enzyme concentration detected by specific antibodies. Itaconate, an efficient inhibitor of ICL, was used as an antimetabolite to screen mutants with enhanced ICL activity. Cultivations of an itaconate-resistant mutant on soybean oil revealed a 15% increase in enzyme specific activity and a 25-fold increase in riboflavin yield compared to the wild-type. On the other hand, growth experiments on glucose resulted in an eightfold increase in riboflavin yield but showed a 33% reduction in ICL specific activity compared to the wild-type grown on the same medium. These results support the idea of an ICL bottleneck in the riboflavin overproducer A. gossypii when plant oil is used as the substrate.

9.
Microbiology (Reading) ; 143(4): 1095-1103, 1997 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-33711885

RESUMO

The recent discovery that phosphoenolpyruvate carboxylase (PEPCx) is dispensable for growth and lysine production in Corynebacterium glutamicum implies that this organism possesses (an) alternative anaplerotic enzyme(s). In permeabilized cells of C. glutamicum, we detected pyruvate carboxylase (PCx) activity. This activity was effectively inhibited by low concentrations of ADP, AMP and acetyl-CoA. PCx activity was highest [45 ± 5 nmol min-1 (mg dry wt)-1] in cells grown on lactate or pyruvate, and was about two- to threefold lower when the cells were grown on glucose or acetate, suggesting that formation of PCx is regulated by the carbon source in the growth medium. In cells grown at low concentrations of biotin (< 5 µg I-1), PCx activity was drastically reduced, indicating that the enzyme is a biotin protein. Growth experiments with the wild-type and a defined PEPCx-negative mutant of C. glutamicum on glucose showed that the mutant has a significantly higher demand for biotin than the wild-type, whereas both strains have the same high biotin requirement for growth on lactate and the same low biotin requirement for growth on acetate. These results indicate that (i) PCx is an essential anaplerotic enzyme for growth on glucose in the absence of PEPCx, (ii) PCx is an essential anaplerotic enzyme for growth on lactate even in the presence of PEPCx, and (iii) PCx has no anaplerotic significance for growth on acetate as the carbon source. In support of these conclusions, screening for clones unable to grow on a minimal medium containing lactate, but able to grow on a medium containing glucose or acetate, led to the isolation of PCx-defective mutants of C. glutamicum.

10.
Appl Environ Microbiol ; 57(6): 1746-1752, 1991 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-16348510

RESUMO

The gene cluster that codes for feedback-resistant aspartate kinase (lysCalpha and lysCbeta) and aspartate semialdehyde dehydrogenase (asd) was cloned from a mutant strain of Corynebacterium glutamicum. Its functional analysis by subcloning, enzyme assays, and type of aspartate kinase regulation enabled the isolation of a fragment for separate expression of the feedback-resistant kinase without aspartate semialdehyde dehydrogenase expression. This was used together with other clones constructed (J. Cremer, L. Eggeling, and H. Sahm, Mol. Gen. Genet. 220:478-480, 1990) to overexpress individually each of the six genes that convert aspartate to lysine. Analysis of lysine formation revealed that overexpression of the feedback-resistant kinase alone suffices to achieve lysine formation (38 mM). Also, sole overexpression of wild-type dihydrodipicolinate synthase resulted in lysine formation but in a lower amount (11 mM). The other four enzymes had no effect on lysine secretion. With a plasmid overexpressing both relevant enzymes together, a further increase in lysine yield was obtained. This shows that of the six enzymes that convert aspartate to lysine the kinase and the synthase are responsible for flow control in the wild-type background and can be useful for construction of lysine-producing strains.

11.
Res Microbiol ; 153(1): 19-25, 2002.
Artigo em Inglês | MEDLINE | ID: mdl-11881894

RESUMO

We here report sequence analyses of a newly described family of putative amino acid exporters, the ThrE family. Homologues were identified in select bacteria, archaea and eukaryotes, but only in the fungal kingdom of eukaryotes. These proteins can exist either as single polypeptide chains or as pairs of polypeptide chains. Computational evidence suggests that these proteins exhibit 10 transmembrane alpha-helical segments (TMSs), having arisen from a five TMS precursor by an early intragenic duplication event. The phylogenetic tree of the ThrE family reveals that most proteins cluster according to organismal phylogeny with only a few exceptions, suggesting that the former proteins are orthologues. All family members exhibit hydrophilic N-terminal (and occasional C-terminal) extensions that show limited sequence similarity with a domain of unknown function found in many peptidases and proteases. The significance of these observations is discussed.


Assuntos
Sistemas de Transporte de Aminoácidos Neutros , Sistemas de Transporte de Aminoácidos/genética , Archaea/genética , Bactérias/genética , Proteínas de Bactérias , Proteínas de Transporte/genética , Proteínas de Membrana/genética , Leveduras/genética , Sequência de Aminoácidos , Sistemas de Transporte de Aminoácidos/química , Sistemas de Transporte de Aminoácidos/classificação , Sistemas de Transporte de Aminoácidos/metabolismo , Aminoácidos/metabolismo , Animais , Archaea/metabolismo , Bactérias/metabolismo , Proteínas de Transporte/química , Proteínas de Transporte/classificação , Proteínas de Transporte/metabolismo , Biologia Computacional/métodos , Duplicação Gênica , Humanos , Proteínas de Membrana/química , Proteínas de Membrana/classificação , Proteínas de Membrana/metabolismo , Dados de Sequência Molecular , Filogenia , RNA Ribossômico 16S/genética , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos , Leveduras/metabolismo
12.
J Biotechnol ; 104(1-3): 5-25, 2003 Sep 04.
Artigo em Inglês | MEDLINE | ID: mdl-12948626

RESUMO

The complete genomic sequence of Corynebacterium glutamicum ATCC 13032, well-known in industry for the production of amino acids, e.g. of L-glutamate and L-lysine was determined. The C. glutamicum genome was found to consist of a single circular chromosome comprising 3282708 base pairs. Several DNA regions of unusual composition were identified that were potentially acquired by horizontal gene transfer, e.g. a segment of DNA from C. diphtheriae and a prophage-containing region. After automated and manual annotation, 3002 protein-coding genes have been identified, and to 2489 of these, functions were assigned by homologies to known proteins. These analyses confirm the taxonomic position of C. glutamicum as related to Mycobacteria and show a broad metabolic diversity as expected for a bacterium living in the soil. As an example for biotechnological application the complete genome sequence was used to reconstruct the metabolic flow of carbon into a number of industrially important products derived from the amino acid L-aspartate.


Assuntos
Aminoácidos/biossíntese , Ácido Aspártico/metabolismo , Corynebacterium/genética , Corynebacterium/metabolismo , Genoma Bacteriano , Proteoma/genética , Proteoma/metabolismo , Vitaminas/biossíntese , Sequência de Aminoácidos , Aminoácidos/genética , Ácido Aspártico/genética , Sequência de Bases , Corynebacterium/classificação , Bases de Dados Genéticas , Perfilação da Expressão Gênica , Dados de Sequência Molecular , Complexos Multienzimáticos/genética , Complexos Multienzimáticos/metabolismo , Proteínas Recombinantes/biossíntese , Análise de Sequência de DNA , Homologia de Sequência do Ácido Nucleico , Vitaminas/genética
13.
J Biotechnol ; 157(3): 359-72, 2012 Feb 10.
Artigo em Inglês | MEDLINE | ID: mdl-22226911

RESUMO

The genome-wide transcriptional responses of the strictly aerobic α-proteobacterium Gluconobacter oxydans 621H to oxygen limitation, to the absence of the cytochrome bc(1) complex, and to low pH were studied using DNA microarray analyses. Oxygen limitation caused expression changes of 486 genes, representing 20% of the chromosomal genes. Genes with an increased mRNA level included those for terminal oxidases, the cytochrome bc(1) complex, transhydrogenase, two alcohol dehydrogenases, heme biosynthesis, PTS proteins, proteins involved in cyclic diGMP synthesis and degradation, two sigma factors, flagella and chemotaxis proteins, several stress proteins, and a putative exporter protein. The downregulated genes comprised those for respiratory dehydrogenases, enzymes of central metabolism, PQQ biosynthesis, outer membrane receptors, Sec proteins, and proteins involved in transcription and translation. A ΔqrcABC mutant of G. oxydans showed a growth defect during cultivation on mannitol at pH 4 under oxygen saturation. Comparison of the transcriptomes of this mutant versus the wild type under these conditions revealed 51 differentially expressed genes. Interestingly, almost all of the 45 genes with increased expression in the ΔqrcABC mutant at pH 4 were also upregulated in the wild type grown at pH 6 under oxygen limitation. These results support an active role of the cytochrome bc(1) complex in G. oxydans respiration. The transcriptome comparison of G. oxydans wild type at pH 4 versus pH 6 in mannitol medium under oxygen-saturated conditions uncovered only 72 differentially expressed genes. The 35 upregulated genes included those for cytochrome bd oxidase, major polyol dehydrogenase, iron storage and oxidative stress proteins. Among the 37 downregulated genes were some encoding enzymes dealing with carbon dioxide, such as biotin carboxylase, biotin carboxyl carrier protein, and carboanhydrase. These results give first insights into global transcriptional responses of G. oxydans.


Assuntos
Complexo III da Cadeia de Transporte de Elétrons/deficiência , Regulação Bacteriana da Expressão Gênica/fisiologia , Genes Bacterianos/genética , Gluconobacter oxydans/metabolismo , Análise de Sequência com Séries de Oligonucleotídeos/métodos , Oxigênio/metabolismo , Cromatografia Líquida de Alta Pressão , Clonagem Molecular , Primers do DNA , Perfilação da Expressão Gênica , Regulação Bacteriana da Expressão Gênica/genética , Concentração de Íons de Hidrogênio , Oligonucleotídeos/genética , Plasmídeos/genética , Reação em Cadeia da Polimerase em Tempo Real
14.
FEMS Microbiol Lett ; 290(2): 227-35, 2009 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-19054080

RESUMO

Reduction of D-fructose to D-mannitol by whole-cell biotransformation with recombinant resting cells of Corynebacterium glutamicum ATCC13032 requires the coexpression of mdh and fdh, which encode mannitol and formate dehydrogenases, respectively. However, d-mannitol formation is limited by the uptake of d-fructose in its unphosphorylated form, because additional expression of the sugar facilitator from Zymomonas mobilis resulted in a significantly increased productivity. Here we identified similarities of the myo-inositol transporters IolT1 and IolT2 of C. glutamicum to the sugar facilitator of Z. mobilis. The myo-inositol transporter genes were both individually overexpressed and deleted in recombinants expressing mdh and fdh. Biotransformation experiments showed that the presence and absence, respectively, of IolT1 and IolT2 significantly influenced D-mannitol formation, indicating a D-fructose transport capability of these transporters. For further evidence, a C. glutamicum Delta ptsF mutant unable to grow with D-fructose was complemented with a heterologous fructokinase gene. This resulted in restoration of growth with D-fructose. Using overexpressed iolT1, mdh and fdh, D-mannitol formation obtained with C. glutamicum was 34.2 g L(-1), as opposed to 16 g L(-1) formed by the strain overexpressing only mdh and fdh, showing the suitability of myo-inositol transporters for D-fructose uptake to obtain D-mannitol formation by whole-cell biotransformation with C. glutamicum.


Assuntos
Proteínas de Bactérias/metabolismo , Corynebacterium glutamicum/metabolismo , Frutose/metabolismo , Inositol/metabolismo , Manitol/metabolismo , Proteínas de Membrana Transportadoras/metabolismo , Sequência de Aminoácidos , Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Transporte Biológico , Corynebacterium glutamicum/química , Corynebacterium glutamicum/genética , Proteínas de Membrana Transportadoras/química , Proteínas de Membrana Transportadoras/genética , Dados de Sequência Molecular , Alinhamento de Sequência , Deleção de Sequência
15.
J Mol Microbiol Biotechnol ; 16(1-2): 6-13, 2009.
Artigo em Inglês | MEDLINE | ID: mdl-18957858

RESUMO

Gluconobacter oxydans is famous for its rapid and incomplete oxidation of a wide range of sugars and sugar alcohols. The organism is known for its efficient oxidation of D-glucose to D-gluconate, which can be further oxidized to two different keto-D-gluconates, 2-keto-D-gluconate and 5-keto-D-gluconate, as well as 2,5-di-keto-D-gluconate. For this oxidation chain and for further oxidation reactions, G. oxydans possesses a high number of membrane-bound dehydrogenases. In this review, we focus on the dehydrogenases involved in D-glucose oxidation and the products formed during this process. As some of the involved dehydrogenases contain pyrroloquinoline quinone (PQQ) as a cofactor, also PQQ synthesis is reviewed. Finally, we will give an overview of further PQQ-dependent dehydrogenases and discuss their functions in G. oxydans ATCC 621H (DSM 2343).


Assuntos
Gluconobacter oxydans/enzimologia , Glucose/metabolismo , Cofator PQQ/metabolismo , Coenzimas/metabolismo , Gluconobacter oxydans/genética , Glucose/genética , Oxirredução , Oxirredutases/metabolismo , Cofator PQQ/genética
16.
J Mol Microbiol Biotechnol ; 16(3-4): 198-207, 2009.
Artigo em Inglês | MEDLINE | ID: mdl-18594129

RESUMO

L-Threonine is an important biotechnological product and Corynebacterium glutamicum is able to synthesize and accumulate this amino acid to high intracellular levels. We here use four exporters of Escherichia coli and show that three of them operate in C. glutamicum, with RhtA and RhtC being the most effective. Whereas RhtA was unspecific, resulting in L-homoserine together with L-threonine excretion, this was not the case with RhtC. Expression of rhtC reduced the intracellular L-threonine concentration from 140 to 11 mM and resulted in maximal excretion rates of 11.2 nmol min(-1) mg(-1) as compared to 2.3 nmol min(-1) mg(-1) obtained without rhtC expression. In combination with an ilvA mutation generated and introduced into the chromosome, an accumulation of up to 54 mM L-threonine was achieved as compared to 21 mM obtained with the ancestor strain. This shows that expression of rhtC is the pivotal point for industrial relevant L-threonine production with C. glutamicum, and might encourage in general the use of heterologous exporters in the field of white biotechnology to make full use of biosynthesis pathways.


Assuntos
Corynebacterium glutamicum/genética , Corynebacterium glutamicum/metabolismo , Proteínas de Membrana/metabolismo , Treonina/metabolismo , Biotecnologia/métodos , Escherichia coli/genética , Escherichia coli/metabolismo , Proteínas de Escherichia coli/metabolismo , Regulação Bacteriana da Expressão Gênica , Fatores de Tempo
17.
Acta Crystallogr D Biol Crystallogr ; 64(Pt 6): 675-85, 2008 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-18560156

RESUMO

Histidinol-phosphate aminotransferase (HisC) is a pyridoxal 5'-phosphate-dependent enzyme that catalyzes the reversible transamination reaction between histidinol phosphate (His-P) and 2-oxoglutarate (O-Glu). The crystal structures of apo histidinol-phosphate aminotransferase from Corynebacterium glutamicum, of the internal PLP aldimine adduct and of a pyridoxamine 5-phosphate-enzyme complex were determined at resolutions of 2.2, 2.1 and 1.8 A, respectively. Residues important for substrate specificity were identified by modelling His-P into the active site and comparison with crystal structures of HisC from Thermotoga maritima and Escherichia coli. Four of the residues lining the substrate-binding pocket were studied by site-directed mutagenesis. Kinetic analysis of the Tyr21Phe mutant suggested that the hydrogen bond between the side chain of this residue and the phosphate group of His-P is important for recognition of the natural substrate and discrimination against other potential amino donors such as phenylalanine and leucine. The mutagenesis studies further indicated that residue Asn99 does not contribute to the specific recognition of the amino-acid donor, but may be involved in binding of the phosphate group of pyridoxal 5'-phosphate. The conserved residues Tyr123 and Tyr257 interact with the substrate through van der Waals interactions and their potential for hydrogen-bonding interactions is not utilized in substrate recognition, as the corresponding phenylalanine mutants show only a moderate effect on the catalytic efficiency kcat/Km.


Assuntos
Corynebacterium glutamicum/enzimologia , Transaminases/química , Sequência de Aminoácidos , Substituição de Aminoácidos , Domínio Catalítico/genética , Corynebacterium glutamicum/genética , Cristalografia por Raios X , Ligação de Hidrogênio , Cinética , Modelos Moleculares , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida , Conformação Proteica , Estrutura Quaternária de Proteína , Fosfato de Piridoxal/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Homologia de Sequência de Aminoácidos , Eletricidade Estática , Especificidade por Substrato , Transaminases/genética , Transaminases/metabolismo
18.
Appl Environ Microbiol ; 73(3): 750-5, 2007 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-17142381

RESUMO

The amino acid L-serine is required for pharmaceutical purposes, and the availability of a sugar-based microbial process for its production is desirable. However, a number of intracellular utilization routes prevent overproduction of L-serine, with the essential serine hydroxymethyltransferase (SHMT) (glyA) probably occupying a key position. We found that constructs of Corynebacterium glutamicum strains where chromosomal glyA expression is dependent on Ptac and lacIQ are unstable, acquiring mutations in lacIQ, for instance. To overcome the inconvenient glyA expression control, we instead considered controlling SHMT activity by the availability of 5,6,7,8-tetrahydrofolate (THF). The pabAB and pabC genes of THF synthesis were identified and deleted in C. glutamicum, and the resulting strains were shown to require folate or 4-aminobenzoate for growth. Whereas the C. glutamicum DeltasdaA strain (pserACB) accumulates only traces of L-serine, with the C. glutamicum DeltapabABCDeltasdaA strain (pserACB), L-serine accumulation and growth responded in a dose-dependent manner to an external folate supply. At 0.1 mM folate, 81 mM L-serine accumulated. In a 20-liter controlled fed-batch culture, a 345 mM L-serine accumulation was achieved. Thus, an efficient and highly competitive process for microbial l-serine production is available.


Assuntos
Proteínas de Bactérias/metabolismo , Corynebacterium glutamicum/metabolismo , Ácido Fólico/biossíntese , Regulação Bacteriana da Expressão Gênica , Mutação , Serina/biossíntese , Proteínas de Bactérias/genética , Biotecnologia/métodos , Corynebacterium glutamicum/enzimologia , Corynebacterium glutamicum/genética , Meios de Cultura/química , Engenharia Genética/métodos , Glicina Hidroximetiltransferase/genética , Glicina Hidroximetiltransferase/metabolismo , Tetra-Hidrofolatos/metabolismo
19.
Glycobiology ; 17(2): 210-9, 2007 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-17088267

RESUMO

The cell wall mycolyl-arabinogalactan (AG)--peptidoglycan complex is essential in mycobacterial species, such as Mycobacterium tuberculosis, and is the target of several antitubercular drugs. For instance, ethambutol (EMB) targets AG biosynthesis through inhibition of the arabinofuranosyltransferases Mt-EmbA and Mt-EmbB, as well as the single Emb from Corynebacterium glutamicum. Here, we present for the first time an experimental analysis of the membrane topology of Emb. The domain organization clearly positions highly conserved loop regions, like the recognized glycosyltransferase C motif and the hydrophilic C-terminus towards the periplasmic side of the cell. Moreover, the assignment and orientation of hydrophobic segments identified a loop region, which might dip into the membrane and could possibly line a transportation channel for the emerging substrate. Site-directed mutations introduced into plasmid-encoded Cg-emb were analyzed in a C. glutamicumDeltaemb strain for their AG glycosyl composition and linkage analysis. Mutations analyzed did not perturb galactan synthesis; however, D297A produced a dramatically reduced arabinan content and prevented growth, indicating an inactive Emb. A second D298A mutation also drastically reduced arabinan content; however, growth of the corresponding mutant was not altered, indicating a certain tolerance of this mutation in terms of Emb function. A W659L-P667A-Q674E triple mutation in the chain length regulation motif (Pro-motif) resulted in a reduced arabinose deposition in AG but retained all arabinofuranosyl linkages. Taken together, the data clearly define important residues of Emb involved in arabinan domain formation and, for the first time, shed new light on the topology of this important enzyme.


Assuntos
Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Membrana Celular/enzimologia , Corynebacterium glutamicum/enzimologia , Pentosiltransferases/química , Pentosiltransferases/genética , Sequência de Aminoácidos , Antituberculosos/farmacologia , Parede Celular/química , Corynebacterium glutamicum/genética , Corynebacterium glutamicum/crescimento & desenvolvimento , Análise Mutacional de DNA , Etambutol/farmacologia , Galactanos/análise , Lipídeos/análise , Modelos Biológicos , Dados de Sequência Molecular , Mycobacterium tuberculosis/efeitos dos fármacos , Mycobacterium tuberculosis/enzimologia , Peptidoglicano/análise , Estrutura Terciária de Proteína
20.
J Biol Chem ; 282(20): 14729-40, 2007 May 18.
Artigo em Inglês | MEDLINE | ID: mdl-17387176

RESUMO

Arabinofuranosyltransferase enzymes, such as EmbA, EmbB, and AftA, play pivotal roles in the biosynthesis of arabinogalactan, and the anti-tuberculosis agent ethambutol (EMB) targets arabinogalactan biosynthesis through inhibition of Mt-EmbA and Mt-EmbB. Herein, we describe the identification and characterization of a novel arabinofuranosyltransferase, now termed AftB (Rv3805c), which is essential in Mycobacterium tuberculosis. Deletion of its orthologue NCgl2780 in the closely related species Corynebacterium glutamicum resulted in a viable mutant. Analysis of the cell wall-associated lipids from the deletion mutant revealed a decreased abundance of cell wall-bound mycolic acids, consistent with a partial loss of mycolylation sites. Subsequent glycosyl linkage analysis of arabinogalactan also revealed the complete absence of terminal beta(1 --> 2)-linked arabinofuranosyl residues. The deletion mutant biochemical phenotype was fully complemented by either Mt-AftB or Cg-AftB, but not with muteins of Mt-AftB, where the two adjacent aspartic acid residues, which have been suggested to be involved in glycosyltransferase activity, were replaced by alanine. In addition, the use of C. glutamicum and C. glutamicumDeltaaftB in an in vitro assay utilizing the sugar donor beta-D-arabinofuranosyl-1-monophosphoryl-decaprenol together with the neoglycolipid acceptor alpha-D-Araf-(1 --> 5)-alpha-D-Araf-O-C(8) as a substrate confirmed AftB as a terminal beta(1 --> 2) arabinofuranosyltransferase, which was also insensitive to EMB. Altogether, these studies have shed further light on the complexities of Corynebacterianeae cell wall biosynthesis, and Mt-AftB represents a potential new drug target.


Assuntos
Proteínas de Bactérias/metabolismo , Parede Celular/metabolismo , Corynebacterium glutamicum/enzimologia , Mycobacterium tuberculosis/enzimologia , Pentosiltransferases/metabolismo , Polissacarídeos/biossíntese , Substituição de Aminoácidos , Antituberculosos/farmacologia , Arabinose/metabolismo , Proteínas de Bactérias/genética , Parede Celular/genética , Corynebacterium glutamicum/genética , Farmacorresistência Bacteriana/efeitos dos fármacos , Farmacorresistência Bacteriana/genética , Etambutol/farmacologia , Deleção de Genes , Teste de Complementação Genética , Mutação de Sentido Incorreto , Mycobacterium tuberculosis/genética , Ácidos Micólicos/metabolismo , Pentosiltransferases/genética , Polissacarídeos/genética
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